mRNA_D-mesarthrocarpus_Contig10154.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10154.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10154.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10154.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10154contigD-mesarthrocarpus_Contig10154:2774..3875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1102
Hectar predicted targeting categoryother localisation
Exons1
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.1973205-UTR-D-mesarthrocarpus_Contig10154:2773..32381680789159.1973205-UTR-D-mesarthrocarpus_Contig10154:2773..3238Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10154 2774..3238 -
1680789159.2212806-UTR-D-mesarthrocarpus_Contig10154:3862..38751680789159.2212806-UTR-D-mesarthrocarpus_Contig10154:3862..3875Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10154 3863..3875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.2109814-CDS-D-mesarthrocarpus_Contig10154:3238..38621680789159.2109814-CDS-D-mesarthrocarpus_Contig10154:3238..3862Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10154 3239..3862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10154.2.1prot_D-mesarthrocarpus_Contig10154.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10154 3239..3862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10154.2.1

>prot_D-mesarthrocarpus_Contig10154.2.1 ID=prot_D-mesarthrocarpus_Contig10154.2.1|Name=mRNA_D-mesarthrocarpus_Contig10154.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=208bp
MPAPAPRPYELRVANGYRGDVRFMDADLRDRGGSALEPMYDDRDRYRFGY
DGYQSRESRDMPLHLRDPDGRLATVRSRDDYPPRGYRDSRDPRDLDQDYV
VVLDDRGSYRGGADPAGGPSYRSNIRSGAMPPEGYRSGGGSGLDGYRGTC
RSIPDDDFGSGREGYSSRAGYGGPSTRDGPLRSPPDDFGGSSSSSSRTSP
RDGYALA*
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mRNA from alignment at D-mesarthrocarpus_Contig10154:2774..3875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10154.2.1 ID=mRNA_D-mesarthrocarpus_Contig10154.2.1|Name=mRNA_D-mesarthrocarpus_Contig10154.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1102bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10154:2774..3875- (Discosporangium mesarthrocarpum MT17_79)
AGGGCCACGGGGAATGCCCGCTCCCGCCCCCCGCCCCTATGAGCTCCGTG
TCGCCAACGGCTACCGGGGGGATGTGCGGTTCATGGATGCCGACCTGAGG
GACCGGGGAGGCAGCGCCCTGGAGCCCATGTATGACGACCGAGACCGCTA
CAGATTTGGCTACGATGGCTACCAGAGCAGGGAGAGCAGGGATATGCCCC
TGCACTTGAGGGACCCCGATGGTAGATTGGCCACCGTCCGTAGCAGGGAT
GACTACCCTCCCCGGGGCTACCGTGACTCCAGGGACCCCCGTGACCTGGA
CCAGGACTATGTTGTGGTTCTAGACGACCGTGGCAGCTACAGGGGGGGGG
CAGATCCTGCTGGAGGCCCTTCTTACCGCAGCAACATCCGTAGTGGCGCC
ATGCCTCCAGAGGGCTACCGCAGCGGTGGTGGCAGTGGCCTTGACGGCTA
CCGGGGCACTTGCAGGTCCATTCCCGATGACGACTTCGGCAGCGGGAGGG
AAGGATACAGCTCCCGGGCCGGTTATGGCGGCCCTAGCACCCGAGATGGG
CCACTCCGGAGCCCCCCTGATGACTTTGGGGGGTCTTCTTCCTCTTCTTC
CCGCACATCACCCAGGGATGGATATGCCCTCGCCTAAGTAGTGCCTGTGG
CCTGAGGGAGGAGATGTCGAATATGTATGTGTAATGGGAAGATGACCAAC
CTGGAGCAAGGACCCAGCGCCCCTGCCCCCAACAGGAGCATCGGCTACAG
GGCAAATATATTGGCTATGGGCGCAGTTTTCTGCACGGTGTAGCCACGAG
ATATATAGAGTAGGTTGACCCCAAGGTGGTGGTGGTAGAGGAGACCTGGC
TGTCCGGGAAGCACATTTGACAGGGCCCACTTGCAATGGTGCGAACGGTT
TGGGAGCAGTGGGGCATAACTATATACATGTACATGGTTGGGATTCTTCT
GCAGAAAGAGAGTGGTTTTGTTAGCCGCAGGGGGCTTTTGAATTCGAGTC
CCCAATATGAATGTTGTTCTTGCCGTCTTGTGTGTTGCCATTGGAACTCA
AGCTGGCAGATTCACAAGCCATCTAAGCAGTCACAGCAGCTTCAGGGAGG
GG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10154:2774..3875-

>mRNA_D-mesarthrocarpus_Contig10154.2.1 ID=mRNA_D-mesarthrocarpus_Contig10154.2.1|Name=mRNA_D-mesarthrocarpus_Contig10154.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=624bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10154:2774..3875- (Discosporangium mesarthrocarpum MT17_79)
ATGCCCGCTCCCGCCCCCCGCCCCTATGAGCTCCGTGTCGCCAACGGCTA
CCGGGGGGATGTGCGGTTCATGGATGCCGACCTGAGGGACCGGGGAGGCA
GCGCCCTGGAGCCCATGTATGACGACCGAGACCGCTACAGATTTGGCTAC
GATGGCTACCAGAGCAGGGAGAGCAGGGATATGCCCCTGCACTTGAGGGA
CCCCGATGGTAGATTGGCCACCGTCCGTAGCAGGGATGACTACCCTCCCC
GGGGCTACCGTGACTCCAGGGACCCCCGTGACCTGGACCAGGACTATGTT
GTGGTTCTAGACGACCGTGGCAGCTACAGGGGGGGGGCAGATCCTGCTGG
AGGCCCTTCTTACCGCAGCAACATCCGTAGTGGCGCCATGCCTCCAGAGG
GCTACCGCAGCGGTGGTGGCAGTGGCCTTGACGGCTACCGGGGCACTTGC
AGGTCCATTCCCGATGACGACTTCGGCAGCGGGAGGGAAGGATACAGCTC
CCGGGCCGGTTATGGCGGCCCTAGCACCCGAGATGGGCCACTCCGGAGCC
CCCCTGATGACTTTGGGGGGTCTTCTTCCTCTTCTTCCCGCACATCACCC
AGGGATGGATATGCCCTCGCCTAA
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