mRNA_D-mesarthrocarpus_Contig10141.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10141.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10141.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A6H5JAZ3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAZ3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.460e-33
Identity = 73/119 (61.34%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    7 RWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPTPALPP--PTPTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            RWERFEELLEEA+ TRDYDVTLAINQM DYLLS+ GA IRQ L+VQLVDQVD+LG D +TF  KN+GQ+   ++  F+      L        +TPAM S  RV NLL SSAGFDA K+
Sbjct:  611 RWERFEELLEEARGTRDYDVTLAINQMVDYLLSENGAQIRQQLSVQLVDQVDQLGVDAITFARKNVGQINAGKIPGFLSGDRQVLEDLMANKDMTPAMASTARVVNLLTSSAGFDAGKI 729          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A7S2V7I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7I9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.920e-22
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    4 ARWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLW-------KNIGQVRDARLFWFVFYPTPALPPPTPTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            ARWER EELL EAQ TRDYDVTLAINQM DYLLS++G PI   L+VQLVD VDRLG +TVT+L        + I  + D                    L+P MQS  R+ + L++S GF+  K+
Sbjct:  168 ARWERMEELLVEAQDTRDYDVTLAINQMVDYLLSEQGEPIVDQLSVQLVDVVDRLGVETVTYLLGTAQGLQRTIQGLEDMD---------------QRELSPTMQSFTRIVSTLSNSEGFELEKI 277          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A835YJ37_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ37_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.050e-19
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 RARWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPI-------------RQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPTPALPPPTPT--LTPAMQSAVRVGNLLASSAGFD 345
            R RWERFEELL EAQ+TRDYDVT+A+NQM DYLLS+ G PI             R+ L+ QLV+ +D++G +T+ FL  N+ Q     L   +     AL        LTPA+ S +RV  L++ S GF+
Sbjct:  560 RPRWERFEELLMEAQNTRDYDVTMALNQMLDYLLSENGRPISATTASAAAVTYLREQLSEQLVEGIDQVGTETLEFLTTNLRQASLGSLPALLSGDRQALRRALAAQDLTPALASLLRVAGLISQSEGFN 689          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A4D9DEZ1_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEZ1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.770e-18
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 RARWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKN-----IGQVRDARLFWFVFYPT----PALPPP-------TPTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            R RWER E+LLE A ST DYDVTLA++Q+ DY LS++G   R++ A +LVD VD+LGADT +++ KN     +GQ   A     V   T      +P P          +TP M +A RV   LA S GFDA ++
Sbjct:  569 RPRWERLEQLLEVAGSTSDYDVTLAMDQLLDYTLSEQGTEFRRIFAAELVDAVDQLGADTTSYVLKNWRSLSLGQATAALSPTLVALSTGTEEDGVPDPFELAGLPDEDMTPTMLAARRVARTLALSRGFDAERL 703          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A1X6P2S3_PORUM (Protein kinase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2S3_PORUM)

HSP 1 Score: 75.1 bits (183), Expect = 2.380e-13
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 RARWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPTPALPPPTPTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            R RW R E LL+ A    DYDV+LA  Q+ D+LLS +GA IR  LA  +V ++D L ADT ++   +  +   A   W       +LPPP    TPAM  A +V  +L+ S G +A K+
Sbjct:  564 RPRWNRLESLLDSATGAGDYDVSLAAEQLVDFLLSPKGAVIRANLASDVVAELDALSADTGSYYLASSARTVAAAGLWVPPALLRSLPPPV--TTPAMNRAAKVWAILSRSRGSNAGKL 680          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A7S1TIR8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIR8_9RHOD)

HSP 1 Score: 71.2 bits (173), Expect = 5.280e-12
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    7 RWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPTPALPP-----PTPTLTPAMQSAVRVGNLLASSAGF 342
            RW R E L E A+S  DYDV+LA+N+M D+LLS+R   +R  +A  +VD +D LGADT  +L   I Q            PT    P     P P  T +M+SA ++ N +  S GF
Sbjct:  580 RWSRVESLFESARSASDYDVSLAMNRMIDFLLSNRAEELRYRIADDVVDNLDELGADTSRYLLSFISQG---------LAPTGIRIPCVSGLPPPVQTNSMRSASKLVNFMQDSQGF 687          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A7S3XYY8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYY8_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 7.150e-12
Identity = 51/134 (38.06%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    7 RWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPTPALPPP-----------------TPTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            RW+R EELL+EA    DYD +LA+NQ  DYLLSD G  I ++ A Q+V   D+LGAD    L    G +R               PPP                 T  ++PAM S VR+ ++L  S G D A V
Sbjct:  560 RWDRLEELLQEATEITDYDASLALNQGIDYLLSDDGEEILELAAYQVVAVADQLGADAAAAL---AGALR--------------APPPLTAEALARLGAGLGAVDTSGMSPAMSSTVRIADILGRSRGVDLAAV 676          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A5J4YM12_PORPP (Protein kinase domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM12_PORPP)

HSP 1 Score: 68.9 bits (167), Expect = 3.410e-11
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 RWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPT--PALPP--------PTPTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            RW+R E LLE A  ++ YDVTLA+N+M +Y+LS R   +R  +A  +VD++D L +D   +    +  V+ A+L   V   T  P LPP        P+P  T AM +A R+ + L  S GF+ A++
Sbjct:  590 RWDRLENLLESAADSKSYDVTLALNRMVEYILSQRAERLRYKVADDIVDELDELSSDVAKYAAGLL--VQQAQL---VSKQTGLPLLPPFSFLARSIPSPVETQAMTNAARLLSALRRSQGFEPARL 711          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: UPI001A0F9361 (AarF/ABC1/UbiB kinase family protein n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI001A0F9361)

HSP 1 Score: 61.6 bits (148), Expect = 1.230e-8
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    7 RWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTFLWKNIGQVRDARLFWFVFY-PTPALPPPT--PTLTPAMQSAVRVGNLLASSAGFDAAKV 357
            RW R E LL  A+S+++YD+T+AI+Q  ++L S+RG  IR+ L  ++V  +D +G  T       I Q    +L W +   P+    PP   P     +   VRV  L+  + GFD  ++
Sbjct:  493 RWNRLENLLSNARSSQEYDLTVAIDQALNFLFSERGGYIREYLVEEIVKAIDTVGQTTAA----RIHQTLQQQLGWLMGQQPSDTDQPPAVNPQQQQTLDHLVRVLGLIRETPGFDPMRI 608          
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Match: A0A7S1BYI9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYI9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.330e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    7 RWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLVDQVDRLGADTVTF 189
            RW R E LLE A S+  YDVT+A++ + DY+LS+ G P+ Q L  Q VD  D LG D V +
Sbjct:  624 RWNRLEGLLENANSSSGYDVTIALDLLVDYILSEEGEPLLQDLGRQSVDGADALGVDVVQY 684          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10141.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAZ3_9PHAE3.460e-3361.34Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S2V7I9_9STRA4.920e-2248.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YJ37_9STRA7.050e-1944.62ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A4D9DEZ1_9STRA1.770e-1843.70Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A1X6P2S3_PORUM2.380e-1340.34Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S1TIR8_9RHOD5.280e-1240.17Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S3XYY8_HETAK7.150e-1238.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5J4YM12_PORPP3.410e-1137.80Protein kinase domain-containing protein n=1 Tax=P... [more]
UPI001A0F93611.230e-833.33AarF/ABC1/UbiB kinase family protein n=1 Tax=Synec... [more]
A0A7S1BYI9_9STRA2.330e-849.18Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10141contigD-mesarthrocarpus_Contig10141:29..875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6V8
PFAMsABC1
Model size357
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006995,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009639,GO:0009642,GO:0009644,GO:0009657,GO:0009658,GO:0009987,GO:0009991,GO:0010035,GO:0010114,GO:0010287,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031279,GO:0031647,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0042221,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043562,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0065008,GO:0065009,GO:0071496,GO:0071704,GO:0071840,GO:0080177,GO:0080183,GO:0097472,GO:0140096,GO:1901564,GO:1901700,GO:1902171
Exons2
Evalue1.43e-34
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size357
COG categoryE
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.1782625-CDS-D-mesarthrocarpus_Contig10141:28..3081680789158.1782625-CDS-D-mesarthrocarpus_Contig10141:28..308Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10141 29..308 +
1680789158.189335-CDS-D-mesarthrocarpus_Contig10141:798..8751680789158.189335-CDS-D-mesarthrocarpus_Contig10141:798..875Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10141 799..875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10141.2.1prot_D-mesarthrocarpus_Contig10141.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10141 29..875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10141.2.1

>prot_D-mesarthrocarpus_Contig10141.2.1 ID=prot_D-mesarthrocarpus_Contig10141.2.1|Name=mRNA_D-mesarthrocarpus_Contig10141.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=119bp
RARWERFEELLEEAQSTRDYDVTLAINQMADYLLSDRGAPIRQVLAVQLV
DQVDRLGADTVTFLWKNIGQVRDARLFWFVFYPTPALPPPTPTLTPAMQS
AVRVGNLLASSAGFDAAKV
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mRNA from alignment at D-mesarthrocarpus_Contig10141:29..875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10141.2.1 ID=mRNA_D-mesarthrocarpus_Contig10141.2.1|Name=mRNA_D-mesarthrocarpus_Contig10141.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=847bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10141:29..875+ (Discosporangium mesarthrocarpum MT17_79)
CGTGCCAGGTGGGAGCGCTTTGAGGAGCTTCTCGAAGAGGCCCAGTCCAC TCGAGACTATGACGTGACCTTGGCCATCAATCAAATGGCGGACTACCTCC TCAGTGACAGGGGGGCGCCTATCCGGCAGGTGCTTGCCGTGCAGCTTGTT GACCAGGTTGACCGCCTGGGAGCCGACACCGTGACCTTCTTGTGGAAGAA CATCGGGCAGGTACGCGACGCACGCCTGTTCTGGTTTGTATTTTACCCTA CCCCCGCCCTGCCCCCACCTACTCCTACTCGTGAGCCTTGTTTTCGTGCA GTGGGTACTGCGCATGATTTGAAGATGAGGAGTGCTGTAGCGCTTGTTCC CCTGTAGCAAGGTTGTGTGTTCTCAAGAGCGGTGCTTGCCCCCACCTAAA GCAAGGGATACGCCTTGATCTACGTACGTGACTTCTTCCTTCAGAAAGTG AAGCAGGTACTTACTGATGCTGCACGTCCAGGGGACAACCGGGTTAGTGT TGAGGCTAGGTCTCGTTTTTTTTTTTGCTCTTGTTTAGTCTGGGGTGCCT GCCGAGTCTTGTGTGTGTTTGTGCGTGGTGAGGGGCGCCCCAGCAAGCGA TTCTGACCGGTAAATCGTTTTTTTGTTGGTGTCGACCCCCCCCCCCCACC CCCCTCCCCTCCCCTGCCCCGCCCCAACCCCGCCCAACGAACAGGTCAAC GCTGGGAAGATCCCTGGCCTTCTCTCGGGGGACCGCCGGGCACTGGAGGA CATGCTATCGCACGGGGAAGTGACACCGGCCATGCAGTCGGCTGTACGTG TCGGAAACCTCCTTGCCTCCAGTGCAGGCTTCGATGCCGCCAAGGTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10141:29..875+

>mRNA_D-mesarthrocarpus_Contig10141.2.1 ID=mRNA_D-mesarthrocarpus_Contig10141.2.1|Name=mRNA_D-mesarthrocarpus_Contig10141.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=357bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10141:29..875+ (Discosporangium mesarthrocarpum MT17_79)
CGTGCCAGGTGGGAGCGCTTTGAGGAGCTTCTCGAAGAGGCCCAGTCCAC
TCGAGACTATGACGTGACCTTGGCCATCAATCAAATGGCGGACTACCTCC
TCAGTGACAGGGGGGCGCCTATCCGGCAGGTGCTTGCCGTGCAGCTTGTT
GACCAGGTTGACCGCCTGGGAGCCGACACCGTGACCTTCTTGTGGAAGAA
CATCGGGCAGGTACGCGACGCACGCCTGTTCTGGTTTGTATTTTACCCTA
CCCCCGCCCTGCCCCCACCTACTCCTACTCTGACACCGGCCATGCAGTCG
GCTGTACGTGTCGGAAACCTCCTTGCCTCCAGTGCAGGCTTCGATGCCGC
CAAGGTT
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