mRNA_D-mesarthrocarpus_Contig10127.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10127.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10127.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 7.650e-22
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   22 RFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIR 255
            RFY+ALY KLLS DL  AS+PVLFLNL Y+A++AD E  R+ A AKRLLQV+A  D+ LAAA LFVVSE+ +K P++R
Sbjct:  664 RFYAALYAKLLSSDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLR 741
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: A0A3P9P9A0_POERE (CCAAT enhancer binding protein zeta n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9P9A0_POERE)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-16
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            A +S+ DRFY ALY KLL P LA+A    LFLNL ++AL+AD    R  A AKRLLQV+AQ  +  AA ALF+VSE  + +P +R L
Sbjct:  456 AQQSVSDRFYVALYRKLLDPGLAAAPRQNLFLNLLFKALKADVAPRRIKAFAKRLLQVAAQQGACFAAGALFLVSEVMKAKPGLRML 542
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: A0A7S3LPV8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LPV8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.830e-16
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEI 252
            +  +L DRFY ALY KLLSP+L S+S   LFLNL YRA++AD    R  A AKRLLQV+  S +  AA ALF++S   + +PE+
Sbjct:   95 SKNTLSDRFYRALYAKLLSPELLSSSKQTLFLNLLYRAMKADVTLNRLRAFAKRLLQVACMSSAQFAAGALFLLSWVVQAKPEL 178
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: M3ZZ86_XIPMA (CBF domain-containing protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=M3ZZ86_XIPMA)

HSP 1 Score: 80.9 bits (198), Expect = 6.730e-16
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            A +S+ DRFY ALY KLL P LA++    LFLNL ++AL+AD    R  A AKRLLQV+AQ  +  AA ALF++SE  + +P +R L
Sbjct:  468 AQQSVSDRFYVALYRKLLDPGLAASPRQSLFLNLLFKALKADVAPRRVKAFAKRLLQVAAQQGACFAAGALFLISEVMKAQPGLRML 554
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: A0A3B5RFM9_XIPMA (CBF domain-containing protein n=19 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5RFM9_XIPMA)

HSP 1 Score: 80.9 bits (198), Expect = 6.750e-16
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            A +S+ DRFY ALY KLL P LA++    LFLNL ++AL+AD    R  A AKRLLQV+AQ  +  AA ALF++SE  + +P +R L
Sbjct:  456 AQQSVSDRFYVALYRKLLDPGLAASPRQSLFLNLLFKALKADVAPRRVKAFAKRLLQVAAQQGACFAAGALFLISEVMKAQPGLRML 542
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: UPI00148FA731 (CCAAT/enhancer-binding protein zeta n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148FA731)

HSP 1 Score: 80.5 bits (197), Expect = 9.240e-16
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            + +S+ DR+Y+ALY KLL P L+S+S   +FLNL Y++L+AD    R  A  KRLLQVSA+ +++ A  ALF+VSE  R +P ++ L
Sbjct:  490 SQQSISDRYYTALYRKLLDPGLSSSSRQSMFLNLLYKSLKADIVLRRVKAFVKRLLQVSAEQNASFACGALFLVSEVMRAKPSLKVL 576
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: I3KR14_ORENI (CCAAT enhancer binding protein zeta n=19 Tax=Pseudocrenilabrinae TaxID=318546 RepID=I3KR14_ORENI)

HSP 1 Score: 80.1 bits (196), Expect = 1.270e-15
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            + +S+ DR+Y ALY KLL P L+S+S P +FLNL Y++++AD    R  A  KRLLQ+SA+  ++ A  ALF+VSE  R +P ++ L
Sbjct:  592 SQQSISDRYYVALYRKLLDPGLSSSSRPNMFLNLLYKSMKADVALRRVKAFVKRLLQISAEQSASFACGALFLVSEVMRAKPGLKIL 678
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: A0A8C5E2G1_9TELE (CCAAT enhancer binding protein zeta n=2 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5E2G1_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 2.350e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            + +S+ DR+Y ALY KLL P L+S+S   +FLNL Y++L+AD    R  A  KRLLQ+SA+ +S+    ALF+VSE  R +P ++ L
Sbjct:  525 SQQSVSDRYYVALYKKLLDPGLSSSSKQSMFLNLLYKSLKADVCVRRVKAFVKRLLQISAEQNSSFTCGALFLVSEVMRSKPSLKML 611
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: UPI001CF69A23 (CCAAT/enhancer-binding protein zeta isoform X2 n=1 Tax=Thunnus albacares TaxID=8236 RepID=UPI001CF69A23)

HSP 1 Score: 79.3 bits (194), Expect = 2.360e-15
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            + +S+ DR+Y ALY KLL P L+S+S   +FLNL Y++L+AD    R  A  KRLLQVSA+ +++ A  ALF+VSE  + +P +R L
Sbjct:  553 SQQSVSDRYYVALYRKLLDPGLSSSSRQSMFLNLLYKSLKADIVLRRVKAFVKRLLQVSAEQNASFACGALFLVSEVMKAKPSLRML 639
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BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Match: UPI001C4CC664 (CCAAT/enhancer-binding protein zeta n=3 Tax=Thunnus TaxID=8234 RepID=UPI001C4CC664)

HSP 1 Score: 79.3 bits (194), Expect = 2.360e-15
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVALAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL 261
            + +S+ DR+Y ALY KLL P L+S+S   +FLNL Y++L+AD    R  A  KRLLQVSA+ +++ A  ALF+VSE  + +P +R L
Sbjct:  552 SQQSVSDRYYVALYRKLLDPGLSSSSRQSMFLNLLYKSLKADIVLRRVKAFVKRLLQVSAEQNASFACGALFLVSEVMKAKPSLRML 638
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10127.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI7.650e-2264.10CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3P9P9A0_POERE1.940e-1654.02CCAAT enhancer binding protein zeta n=1 Tax=Poecil... [more]
A0A7S3LPV8_9STRA4.830e-1652.38Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
M3ZZ86_XIPMA6.730e-1651.72CBF domain-containing protein n=1 Tax=Xiphophorus ... [more]
A0A3B5RFM9_XIPMA6.750e-1651.72CBF domain-containing protein n=19 Tax=Poeciliinae... [more]
UPI00148FA7319.240e-1648.28CCAAT/enhancer-binding protein zeta n=1 Tax=Notola... [more]
I3KR14_ORENI1.270e-1547.13CCAAT enhancer binding protein zeta n=19 Tax=Pseud... [more]
A0A8C5E2G1_9TELE2.350e-1547.13CCAAT enhancer binding protein zeta n=2 Tax=Gouani... [more]
UPI001CF69A232.360e-1548.28CCAAT/enhancer-binding protein zeta isoform X2 n=1... [more]
UPI001C4CC6642.360e-1548.28CCAAT/enhancer-binding protein zeta n=3 Tax=Thunnu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10127contigD-mesarthrocarpus_Contig10127:773..1801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPZ6
Preferred nameCEBPZ
PFAMsAAA_5,CBF
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
Exons2
Evalue1.25e-22
EggNOG OGsCOG5271@1|root,COG5593@1|root,KOG1808@2759|Eukaryota,KOG2038@2759|Eukaryota
Descriptionribosome biogenesis
Cds size261
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.5043123-CDS-D-mesarthrocarpus_Contig10127:772..9431680789157.5043123-CDS-D-mesarthrocarpus_Contig10127:772..943Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10127 773..943 +
1680789157.5159447-CDS-D-mesarthrocarpus_Contig10127:1711..18011680789157.5159447-CDS-D-mesarthrocarpus_Contig10127:1711..1801Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10127 1712..1801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10127.2.1prot_D-mesarthrocarpus_Contig10127.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10127 773..1801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10127.2.1

>prot_D-mesarthrocarpus_Contig10127.2.1 ID=prot_D-mesarthrocarpus_Contig10127.2.1|Name=mRNA_D-mesarthrocarpus_Contig10127.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=87bp
ASESLRDRFYSALYVKLLSPDLASASSPVLFLNLCYRALRADRETGRSVA
LAKRLLQVSAQSDSALAAAALFVVSESFRKRPEIRSL
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mRNA from alignment at D-mesarthrocarpus_Contig10127:773..1801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10127.2.1 ID=mRNA_D-mesarthrocarpus_Contig10127.2.1|Name=mRNA_D-mesarthrocarpus_Contig10127.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1029bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10127:773..1801+ (Discosporangium mesarthrocarpum MT17_79)
GCATCGGAGTCGCTTCGGGACCGTTTTTACAGCGCCCTGTACGTGAAGCT
GCTCTCCCCAGACTTGGCCAGCGCGTCCAGCCCGGTCCTGTTCCTCAACC
TCTGCTACAGGGCCCTGAGAGCAGACAGGGAGACGGGTCGCTCCGTGGCG
CTCGCGAAGCGCCTTCTCCAGGTGTTGTAGTACAATGTACGGGTACGGCA
CAAAATACGGTTTAGTGGGTGTCCTGCGAAAGAGGTTCCCATGTGACTTT
GCTATGCATCCCTTCTTCTCCCTGTTCATGTGCACATGCACATGTGGGGA
CCCATTTTCTCTCAGGAAAAGTCAATGGTGATGCCCCACCGTCAAAAGAC
ATGGATAATGAAGGCTATATATAGGAAGGGGGAGGGGTATGGTTGATGTG
ATGCAGCTCTGCCTCCCTCATCCAACTCCTTCGTGTGTTGAAGCAGAAGC
ACACCCATTTTAGGTCCTCCATCCACGCTTAGGCTCTGCACCGTATGACT
ACGATTGGCAGCGCTGTACAGCTAGCTGTTACCGGTGCCAGGTGCTCTGT
GTTTGTGTACTCAGAACCATTACTGTGTTCTTCTTTGCTGTCTTTCCAAT
GATGGGGCTGTTCTTTGCCTCTCGGCAGCTCTGCTCCCTGCTCTATGTGT
GAATGCCGCGTGTGCCACACCGTACATACCTGGCCGTTCGTTCTCTCACC
CTAACCTTGTTCTTGGCGTTTCCTTGGTATTGGGGCTGTGGCTCTGGCGG
TGGCCAAGTCCGCGGTCCCCGACCTAAACGCGGCGTGGCGTGTTACACAC
CCCCTGAGGTGAGGTGTGTGCAGTATTCTCTTCTTCCCCTTCTGCCTGCT
AACCATCCCCCAAACGTGTCCCCCACTTTCTGTTGTCCACCGCGTCCGTG
CAATGCCCCGTGTGGCCCCGGGCTCTGGGCGCGCCGCAGGTGAGCGCCCA
GAGCGACTCCGCGCTGGCGGCGGCAGCTCTCTTTGTGGTGTCCGAGTCAT
TCCGCAAGCGGCCAGAGATCAGGTCCTTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10127:773..1801+

>mRNA_D-mesarthrocarpus_Contig10127.2.1 ID=mRNA_D-mesarthrocarpus_Contig10127.2.1|Name=mRNA_D-mesarthrocarpus_Contig10127.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=261bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10127:773..1801+ (Discosporangium mesarthrocarpum MT17_79)
GCATCGGAGTCGCTTCGGGACCGTTTTTACAGCGCCCTGTACGTGAAGCT
GCTCTCCCCAGACTTGGCCAGCGCGTCCAGCCCGGTCCTGTTCCTCAACC
TCTGCTACAGGGCCCTGAGAGCAGACAGGGAGACGGGTCGCTCCGTGGCG
CTCGCGAAGCGCCTTCTCCAGGTGAGCGCCCAGAGCGACTCCGCGCTGGC
GGCGGCAGCTCTCTTTGTGGTGTCCGAGTCATTCCGCAAGCGGCCAGAGA
TCAGGTCCTTG
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