mRNA_D-mesarthrocarpus_Contig10121.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A6H5KIX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.620e-36
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = 1

Query:    1 KKVASIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQV 249
            K+VA +RNLY A+MSYNGYT TDGALRLIVLL+AADLGFNAIEIAFMF+ YE+AGVFTNLFG +AGSKYGLRFTLLTSL LQ+
Sbjct:   63 KQVAPMRNLYTAAMSYNGYTVTDGALRLIVLLHAADLGFNAIEIAFMFSAYEVAGVFTNLFGGVAGSKYGLRFTLLTSLVLQI 145

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: D7FPK8_ECTSI (Putative membrane transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.850e-36
Identity = 68/84 (80.95%), Postives = 78/84 (92.86%), Query Frame = 1

Query:    1 KKVASIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQVL 252
            K+VA +RNLY A++SYNGYT TDGALRLIVLL+AADLGFNAIEIAFMF+ YE+AGVFTNLFG +AGSKYGLRFTLLTSL LQ++
Sbjct:   66 KQVAPMRNLYTAALSYNGYTVTDGALRLIVLLHAADLGFNAIEIAFMFSAYEVAGVFTNLFGGVAGSKYGLRFTLLTSLVLQII 149

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A836CH56_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH56_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.360e-29
Identity = 57/83 (68.67%), Postives = 73/83 (87.95%), Query Frame = 1

Query:    1 KKVASIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQV 249
            K+ A IRNLY+ +MSYN +TFTDGALRL+VLL+A +LGF+AI+IA MF+ YE+AGVFTNLFG +AGSK+GL  TL+TS+FLQ+
Sbjct:   31 KEPAPIRNLYITAMSYNAFTFTDGALRLVVLLHADELGFDAIQIAIMFSLYEVAGVFTNLFGGVAGSKFGLFCTLMTSIFLQI 113

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A836CEU1_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.010e-25
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1

Query:    1 KKVASIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQVL 252
            ++ A +RNLYV S SY G+T TDGALRL+VLL A  LGF+AI+IA MF+ YE AGV TNLFG +AGSKYGL  TLL+SL LQ+L
Sbjct:   36 REPAPVRNLYVTSTSYVGFTLTDGALRLVVLLYADSLGFDAIQIAIMFSLYEAAGVVTNLFGGVAGSKYGLFCTLLSSLLLQML 119

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A2R5GYA8_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYA8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.760e-22
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1

Query:   13 SIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQV 249
            SIRNLYV   S+N +T TDGA+RL+VLL+AA LGF+ I+IA MFT YELAGVFTNLFG + G++YGL+ +L  SL  QV
Sbjct:   98 SIRNLYVTVYSFNLFTITDGAIRLVVLLHAAALGFSPIQIAIMFTLYELAGVFTNLFGGIIGTRYGLKVSLFISLGTQV 176

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A7S2WN85_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WN85_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.460e-20
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1

Query:    7 VASIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQV 249
            V  +RN Y    S+N +T TDGA+R+IVLL+A  L F  I IA MFT YEL GVFTNLFG +AG+++GL+ TL TSLFLQ+
Sbjct:   73 VLPMRNFYATVYSFNMFTVTDGAIRVIVLLHANALNFTPIAIALMFTLYELMGVFTNLFGGIAGTRWGLKCTLFTSLFLQL 153

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A0D2X352_CAPO3 (Major facilitator transporter n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X352_CAPO3)

HSP 1 Score: 86.3 bits (212), Expect = 6.740e-18
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 1

Query:   13 SIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQ 246
            S+R  YV S+SY  +T TDGALR+IVL+ A D+GF+A EIA MF  YEL GV TNL G +  S+ GLR TLL  L LQ
Sbjct:   33 SLRPFYVISLSYLLFTLTDGALRMIVLMQANDIGFSAFEIALMFVLYELCGVVTNLLGGVLASRLGLRTTLLCGLVLQ 110

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A7S3RQG7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RQG7_9SPIT)

HSP 1 Score: 82.8 bits (203), Expect = 1.140e-17
Identity = 41/74 (55.41%), Postives = 59/74 (79.73%), Query Frame = 1

Query:   31 VASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQVL 252
            V S SY  +T TDGALR+IVLL+A +L F+A+++A MF  YELAGVFTNLF  +AG+++G+++TL+  L LQ++
Sbjct:   41 VISCSYLLFTVTDGALRMIVLLHAYNLKFSALQVAIMFVLYELAGVFTNLFAGMAGARWGIKYTLVIGLCLQLI 114

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BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A6U2C943_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2C943_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.330e-17
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 1

Query:   13 SIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQV 249
            ++R   + S SY  +T TDGA+R+IVLL+A +  F+A+E+A MFT YELAGVFTNL   LAG+++G+R TL++ L LQ+
Sbjct:   31 ALRPFVIISTSYLLFTVTDGAIRMIVLLHAYNKSFSALEVAVMFTLYELAGVFTNLLAGLAGARWGIRCTLISGLTLQL 109

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Match: A0A6A0A9R8_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A9R8_HAELA)

HSP 1 Score: 79.3 bits (194), Expect = 4.610e-17
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1

Query:   64 TDGALRLIVLLNAADLGFNAIEIAFMFTTYELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQV 249
            TDGA+R+IVLLNA +LGF A E+A MFT YELAGVFTNL   + G+K+GL+ TLLT L LQ+
Sbjct:    2 TDGAIRMIVLLNAYNLGFTAWEVALMFTAYELAGVFTNLAAGMMGAKWGLKNTLLTGLSLQL 63

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10121.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5KIX3_9PHAE	1.620e-36	83.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FPK8_ECTSI	4.850e-36	80.95	Putative membrane transporter (ISS) n=1 Tax=Ectoca...	[more]
A0A836CH56_9STRA	6.360e-29	68.67	Putative membrane transporter n=1 Tax=Tribonema mi...	[more]
A0A836CEU1_9STRA	6.010e-25	66.67	Putative membrane transporter n=1 Tax=Tribonema mi...	[more]
A0A2R5GYA8_9STRA	1.760e-22	64.56	Uncharacterized protein n=1 Tax=Hondaea fermentalg...	[more]
A0A7S2WN85_9STRA	2.460e-20	59.26	Hypothetical protein n=1 Tax=labyrinthulid quahog ...	[more]
A0A0D2X352_CAPO3	6.740e-18	58.97	Major facilitator transporter n=1 Tax=Capsaspora o...	[more]
A0A7S3RQG7_9SPIT	1.140e-17	55.41	Hypothetical protein (Fragment) n=1 Tax=Strombidin...	[more]
A0A6U2C943_9STRA	3.330e-17	53.16	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A6A0A9R8_HAELA	4.610e-17	66.13	Uncharacterized protein (Fragment) n=1 Tax=Haemato...	[more]

Pages

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789157.2429295-CDS-D-mesarthrocarpus_Contig10121:259..355	1680789157.2429295-CDS-D-mesarthrocarpus_Contig10121:259..355	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig10121 260..355 -
1680789157.2618613-CDS-D-mesarthrocarpus_Contig10121:2000..2156	1680789157.2618613-CDS-D-mesarthrocarpus_Contig10121:2000..2156	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig10121 2001..2156 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig10121.1.1	prot_D-mesarthrocarpus_Contig10121.1.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig10121 260..2156 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10121:260..2156-
coding sequence from alignment at D-mesarthrocarpus_Contig10121:260..2156-

protein sequence of mRNA_D-mesarthrocarpus_Contig10121.1.1

>prot_D-mesarthrocarpus_Contig10121.1.1 ID=prot_D-mesarthrocarpus_Contig10121.1.1|Name=mRNA_D-mesarthrocarpus_Contig10121.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=84bp
KKVASIRNLYVASMSYNGYTFTDGALRLIVLLNAADLGFNAIEIAFMFTT
YELAGVFTNLFGSLAGSKYGLRFTLLTSLFLQVL

mRNA from alignment at D-mesarthrocarpus_Contig10121:260..2156-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10121.1.1 ID=mRNA_D-mesarthrocarpus_Contig10121.1.1|Name=mRNA_D-mesarthrocarpus_Contig10121.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1897bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10121:260..2156- (Discosporangium mesarthrocarpum MT17_79)
AAAAAAGTTGCTTCCATCCGAAACTTGTATGTGGCGTCGATGTCCTACAA
TGGGTATACATTTACGGATGGCGCCCTCCGCCTCATCGTCTTGCTGAACG
CGGCCGACCTCGGCTTCAACGCCATCGAGATCGCCTTTATGTTTACAACC
TACGAGGTGCGCTGGGTGGGCGATGGTTTGTGTGTGGAAGGTTGGGTCGG
CTATGTTAGTGTATAAAGGAATAAATTGGGGGTTCGTCTGAGGTTGAATC
CATCGCGTCACGGCAGATTCGGGTTGCTTTCTTTATGGATGAAGGTAGGT
AGATACCTTTGAACGGCACCTCAAAGTACATACTGGGGACTTGTGTGTCG
GTGGTCAGGTAGGTGTATATCTCAGCAAATGCCTCTTACCCCTCGCGTAG
GACTTCACACCTCGCCTAAAATTTCCGATGTATTTTACTGTTACCCCGTT
ACAAGTACACTGCGGTAGTGGGAATGGAGATCAAATCCCATCTCATTCCC
AGATTCCCAGGGCAGAGATAATTTTTATTGCCGAAAGAGTGTTTTAGGAC
TCGACGAACATGCTCAGTGGGATCGAGTTGACGTCGGATACTCATGTCTC
CTACGGAGCCATGGTAGGTACGTAACCTTTTTTTTTTACCAGTGCGGCGC
CGTCGCGCAAGTAGGTCGGAACAAGGCCAACGCGGGCTCTGCTGCTTGAA
AGCACTCGGCCACCGCCCGAAGACTATAGATGAATCAGCAGAGTAGATAT
GGGCCCTGGGCCGCTGGGGAAAACTTCACGGTCCGAGGGTTCCAGGGTTT
CCTTTGTTGGGCACGGTGTACAAGCAAGAATGAGGATGCCTCCGCAACAT
TGGTTGGGGTTAGGGGAAGGGGTACAGGTTCCTGCCCATACACACCGCAC
TTCTTCACATTTAAACAGTTTCAGATTGGAACCTAGCTTGCAACATATCT
GTTTCCAAGCGGCATTCCCTCTGCACAAGAAAGATACGACGAGTGCGTCA
GATGTCTGCCCTTTGCCCTATGATTCTGCTTTACCCTCAAGTCAGGGTGG
TGGTTTTCCCCGGGCAAGGCACATACTCTCAAGCATTGCTTCCTTTTTGT
AAGGTTTGTCACCTTTATGCTTCTATATATAGTTGAAACATGACATCTAA
TAGTGAACGGCACACGTATTTACTAGTTAGGAACAGATAGCAGAATGAGG
AGGTGTGAGAGAGAAGGAGGAAGGAGGGGTTCCACACCACCTTTGGCCAG
GATGACCCACAATCCAGGGCAAATTTCGCCCTCATTTGTTCCATCGTTTT
GTTAGAACAAGAAGCGGTAGGTCTTCTATTTTTGCCTTCAACCTCACCCT
GACCCTCCCTTACCCTTCCATCCCTCTTCTCACTGCTCGTTCCCCAACAA
CCCTAACTCTAACCCTGTTCCCACCGCTCTGTTGCCTAACCCCACACCCT
AACCATGTGGGACTCTCACCGGGTTCCCGCAGGGCCTCCCATCGCCCCCC
TGTGAACAAAACAAAACCAATAATGTGCTTCAGTGTTTTTTCTCACTTCT
TTCTTTGTGTTCCCTGTGTGCACACACATACATTTGGCGGGGGGGGGAGG
GGAGGGTTTCCTTTTTGTTCTTTTTTTGGCCTGGAAGAAGCGTGCAGCAG
AGGGTTGGGGGGGAAACCCTGCGGAAAGAAAATATATCGTGTATTCTTAC
GCGCCTGAAAGAATATTTCTGAAATTGTTTTTTCTTCCGTGTCGTAGTCT
TAATTCTTGTCATTCTTCCTTCTTGTTCTTCTCTTGCTGTTCCCCACGCA
GCTAGCGGGAGTGTTCACTAACCTGTTCGGATCACTGGCGGGTTCCAAGT
ACGGCCTGCGGTTCACCCTCCTCACCTCCCTCTTCCTTCAGGTATTG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10121:260..2156-

>mRNA_D-mesarthrocarpus_Contig10121.1.1 ID=mRNA_D-mesarthrocarpus_Contig10121.1.1|Name=mRNA_D-mesarthrocarpus_Contig10121.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=252bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10121:260..2156- (Discosporangium mesarthrocarpum MT17_79)
AAAAAAGTTGCTTCCATCCGAAACTTGTATGTGGCGTCGATGTCCTACAA
TGGGTATACATTTACGGATGGCGCCCTCCGCCTCATCGTCTTGCTGAACG
CGGCCGACCTCGGCTTCAACGCCATCGAGATCGCCTTTATGTTTACAACC
TACGAGCTAGCGGGAGTGTTCACTAACCTGTTCGGATCACTGGCGGGTTC
CAAGTACGGCCTGCGGTTCACCCTCCTCACCTCCCTCTTCCTTCAGGTAT
TG