mRNA_D-mesarthrocarpus_Contig1012.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1012.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig1012.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1012.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1012contigD-mesarthrocarpus_Contig1012:16867..17395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size529
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.0667033-UTR-D-mesarthrocarpus_Contig1012:16866..170661680789157.0667033-UTR-D-mesarthrocarpus_Contig1012:16866..17066Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1012 16867..17066 +
1680789157.0851307-UTR-D-mesarthrocarpus_Contig1012:17387..173951680789157.0851307-UTR-D-mesarthrocarpus_Contig1012:17387..17395Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1012 17388..17395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.0764267-CDS-D-mesarthrocarpus_Contig1012:17066..173871680789157.0764267-CDS-D-mesarthrocarpus_Contig1012:17066..17387Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1012 17067..17387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1012.4.1prot_D-mesarthrocarpus_Contig1012.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1012 17067..17387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1012.4.1

>prot_D-mesarthrocarpus_Contig1012.4.1 ID=prot_D-mesarthrocarpus_Contig1012.4.1|Name=mRNA_D-mesarthrocarpus_Contig1012.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=107bp
MEIKLTCGRRRSTLKTSGANISMRILREKQSRGKKERSTTVARRPLGTRD
VNTTTEGTGRRNEKNLNQICVTQFLPCQPSSCSAAYAKGQLGRKTWGPPW
CQVEIG*
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mRNA from alignment at D-mesarthrocarpus_Contig1012:16867..17395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1012.4.1 ID=mRNA_D-mesarthrocarpus_Contig1012.4.1|Name=mRNA_D-mesarthrocarpus_Contig1012.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=529bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1012:16867..17395+ (Discosporangium mesarthrocarpum MT17_79)
GACAATGATCCAAGTACATGAGGACGATGAAACAAGCATTAGTATCAAAA
TGCGTGTGCTTGGACTGGGTAGAGATTTTACTGTAGCACCCAAACTGGAC
TTCTCATCTTACTCGAGATTTTCGGCTCAGGTGCAGGGCATCCTGGACTC
TCTCCCCTCTCCACCCTATTCATTGCAATCGATTCAATACGCCGACCCAG
ATGGAGATTAAATTGACCTGCGGGAGGCGACGTTCGACCCTGAAGACTTC
CGGGGCAAACATCTCGATGAGGATCTTGCGTGAGAAGCAGAGTCGCGGGA
AAAAAGAAAGGTCAACAACAGTGGCACGTCGACCTCTTGGCACCCGCGAT
GTGAACACGACAACTGAGGGTACAGGGAGACGAAATGAAAAAAACCTCAA
TCAAATATGTGTCACACAGTTCCTCCCGTGTCAGCCAAGTTCATGTTCGG
CAGCGTACGCAAAGGGGCAACTAGGACGAAAGACCTGGGGGCCTCCGTGG
TGCCAGGTCGAAATAGGCTGAGGGGTACA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1012:16867..17395+

>mRNA_D-mesarthrocarpus_Contig1012.4.1 ID=mRNA_D-mesarthrocarpus_Contig1012.4.1|Name=mRNA_D-mesarthrocarpus_Contig1012.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=321bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1012:16867..17395+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAGATTAAATTGACCTGCGGGAGGCGACGTTCGACCCTGAAGACTTC
CGGGGCAAACATCTCGATGAGGATCTTGCGTGAGAAGCAGAGTCGCGGGA
AAAAAGAAAGGTCAACAACAGTGGCACGTCGACCTCTTGGCACCCGCGAT
GTGAACACGACAACTGAGGGTACAGGGAGACGAAATGAAAAAAACCTCAA
TCAAATATGTGTCACACAGTTCCTCCCGTGTCAGCCAAGTTCATGTTCGG
CAGCGTACGCAAAGGGGCAACTAGGACGAAAGACCTGGGGGCCTCCGTGG
TGCCAGGTCGAAATAGGCTGA
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