mRNA_D-mesarthrocarpus_Contig10117.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10117.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10117.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10117.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10117contigD-mesarthrocarpus_Contig10117:2950..3750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size363
Hectar predicted targeting categorysignal peptide
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.9262643-CDS-D-mesarthrocarpus_Contig10117:2949..30501680789156.9262643-CDS-D-mesarthrocarpus_Contig10117:2949..3050Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10117 2950..3050 +
1680789156.9374235-CDS-D-mesarthrocarpus_Contig10117:3488..37501680789156.9374235-CDS-D-mesarthrocarpus_Contig10117:3488..3750Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10117 3489..3750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10117.1.1prot_D-mesarthrocarpus_Contig10117.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10117 2950..3750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10117.1.1

>prot_D-mesarthrocarpus_Contig10117.1.1 ID=prot_D-mesarthrocarpus_Contig10117.1.1|Name=mRNA_D-mesarthrocarpus_Contig10117.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=121bp
RRWKTALVPLTVLISGYFLSCAFSEILIRGQQESQRQAFLHVSDSLSTGV
VTAFIAGLKEASVATTISLFQGKISLEDFYTVAYSFLEYDGEHIPFSPLI
KPLRTNRNRNRNHPCAGNRC*
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mRNA from alignment at D-mesarthrocarpus_Contig10117:2950..3750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10117.1.1 ID=mRNA_D-mesarthrocarpus_Contig10117.1.1|Name=mRNA_D-mesarthrocarpus_Contig10117.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=801bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10117:2950..3750+ (Discosporangium mesarthrocarpum MT17_79)
CGGCGATGGAAAACTGCGCTTGTGCCGCTGACTGTGCTCATTTCCGGATA
CTTCCTGTCGTGTGCCTTTTCAGAGATCTTGATAAGGGGCCAGCAGGAAA
GGTGAGAGTTGCCTGTAGGTGGCATGTGTCACCCCTTTCCGTTTACAACT
TTCGTGGAAAGCCTGTGATCGAGCTGGCAGGGTCGAGCGGTCTGATCCCC
AACTGCCGTAGTAGGGCCCACTACCCCCATTGTTACGAGGGGGTGCCGCC
ATGCCACTCAAATATGACACTTTAATCATGTCAACACCCCACCGTCCCAT
ACCTATTCCCGTGCTCCCTTAAGTTTTGAACCGACGATTAGTGTGCAGAA
CTAAGAATAGTAGGAGATGGCAGACCAAGAACCACTTAATTTATTTTGGG
ATCGGTGCCAAGGGCACGAATTTGATGCTGCATATATCTTCTACCCAATA
TTTGGGCACATGGTGGCTGCTCCCCTCACAACCCGCCTTTGATTAGCCCC
AAAATATCCATCATGTTCCCTGCGTTACTCTTTTCTCAGCCAAAGACAGG
CCTTCCTCCACGTGAGCGACTCTTTATCAACTGGGGTGGTGACAGCATTC
ATTGCTGGCTTGAAGGAGGCCTCGGTGGCAACCACTATTTCATTGTTCCA
AGGAAAGATCTCCCTGGAGGACTTCTACACAGTCGCCTACAGCTTCTTGG
AATATGATGGTGAACACATTCCCTTCTCACCCCTGATCAAACCACTTCGT
ACTAACCGTAACCGTAACCGTAACCATCCTTGTGCCGGCAACCGATGCTG
A
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10117:2950..3750+

>mRNA_D-mesarthrocarpus_Contig10117.1.1 ID=mRNA_D-mesarthrocarpus_Contig10117.1.1|Name=mRNA_D-mesarthrocarpus_Contig10117.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=363bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10117:2950..3750+ (Discosporangium mesarthrocarpum MT17_79)
CGGCGATGGAAAACTGCGCTTGTGCCGCTGACTGTGCTCATTTCCGGATA
CTTCCTGTCGTGTGCCTTTTCAGAGATCTTGATAAGGGGCCAGCAGGAAA
GCCAAAGACAGGCCTTCCTCCACGTGAGCGACTCTTTATCAACTGGGGTG
GTGACAGCATTCATTGCTGGCTTGAAGGAGGCCTCGGTGGCAACCACTAT
TTCATTGTTCCAAGGAAAGATCTCCCTGGAGGACTTCTACACAGTCGCCT
ACAGCTTCTTGGAATATGATGGTGAACACATTCCCTTCTCACCCCTGATC
AAACCACTTCGTACTAACCGTAACCGTAACCGTAACCATCCTTGTGCCGG
CAACCGATGCTGA
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