mRNA_D-mesarthrocarpus_Contig10114.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10114.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10114.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10114.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10114contigD-mesarthrocarpus_Contig10114:137..4155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1564
Hectar predicted targeting categoryother localisation
Exons3
Cds size1560
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.8651452-CDS-D-mesarthrocarpus_Contig10114:138..2161680789156.8651452-CDS-D-mesarthrocarpus_Contig10114:138..216Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10114 139..216 -
1680789156.8828099-CDS-D-mesarthrocarpus_Contig10114:1308..13891680789156.8828099-CDS-D-mesarthrocarpus_Contig10114:1308..1389Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10114 1309..1389 -
1680789156.8925724-CDS-D-mesarthrocarpus_Contig10114:2754..41551680789156.8925724-CDS-D-mesarthrocarpus_Contig10114:2754..4155Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10114 2755..4155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10114.1.1prot_D-mesarthrocarpus_Contig10114.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10114 139..4155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10114.1.1

>prot_D-mesarthrocarpus_Contig10114.1.1 ID=prot_D-mesarthrocarpus_Contig10114.1.1|Name=mRNA_D-mesarthrocarpus_Contig10114.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=520bp
TGRARGGEEGEVGQLAGLGTGAGAGAGPSAGAGAGPGADVAAKAKAKAKE
GKSPAKQSESSEEEESLDAIMNEGRKRRAAARLTAKDQGVKKGLLEREMR
PGVEGEPGLPATRTGGRIGGGSGPVGGATRAPAVLAASARATAQPPVGLS
GRHRNASEPSLSEKGVQSGVDVEIGPVVETAQGSSKAKPDPAQQPEIGGG
SSNGHQTGSGRPGVRRASLGSVVQVIPGSAAAAAEKVVATTTGGETGTSE
HQQAVTHNRVSTPPRPPEPQLHSRAGAGPEAGEKEGVDSRGGSGGGTGEN
RGSLEHLHQQMQYHPPRRASTGTGIIMRSTMIPRDTVGTAMKQASLPRQL
SLSADPLPLPVIPPSDPDIATVEALLWKGGDGDVEQHKMGVGAGAGAGAV
LTYSGKTSSGSGSSGASGVGESGVEAGVETGQGDSSSSTGTTPERKRTAS
HIKLRPKPEELDLSLHEAVYDDDLETLHHLLDELAEEAELEEERALSGES
NNGGEGSSDTSSSIGYSSEY
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10114:137..4155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10114.1.1 ID=mRNA_D-mesarthrocarpus_Contig10114.1.1|Name=mRNA_D-mesarthrocarpus_Contig10114.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4019bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10114:137..4155- (Discosporangium mesarthrocarpum MT17_79)
ACGGGCAGGGCCCGGGGAGGGGAAGAGGGAGAAGTCGGGCAGCTTGCAGG
ACTGGGGACTGGGGCGGGGGCAGGGGCTGGGCCAAGTGCAGGGGCAGGGG
CTGGGCCAGGGGCAGATGTGGCAGCCAAGGCCAAGGCCAAGGCCAAGGAG
GGCAAGTCACCAGCAAAACAGTCAGAAAGCTCTGAGGAAGAGGAGTCACT
GGATGCCATCATGAACGAGGGGAGAAAACGGAGAGCGGCGGCGAGGCTCA
CTGCCAAGGACCAGGGAGTGAAGAAGGGGCTGCTGGAGAGGGAGATGAGG
CCTGGGGTGGAGGGTGAGCCTGGGTTGCCTGCTACCAGAACTGGGGGCAG
GATAGGGGGGGGCTCTGGGCCAGTGGGTGGGGCGACCAGGGCACCTGCAG
TGCTGGCAGCCTCTGCAAGAGCCACAGCACAACCACCGGTGGGGCTGTCG
GGGAGGCACAGGAACGCTTCAGAGCCGTCGCTTTCAGAAAAGGGAGTGCA
ATCAGGGGTGGATGTGGAGATTGGGCCAGTGGTGGAAACGGCACAGGGCT
CATCGAAGGCGAAGCCGGACCCGGCGCAGCAGCCCGAGATAGGGGGGGGC
TCCAGCAATGGGCACCAAACAGGCTCTGGGCGCCCTGGGGTGCGTCGGGC
ATCCCTGGGGTCGGTGGTGCAGGTGATCCCTGGCTCCGCAGCTGCTGCCG
CCGAGAAAGTTGTTGCCACCACCACAGGAGGAGAAACAGGCACTTCAGAG
CACCAGCAGGCTGTGACACACAACCGGGTCAGCACCCCGCCGCGCCCTCC
AGAGCCACAGCTGCACTCCAGGGCTGGGGCAGGGCCAGAAGCAGGGGAAA
AGGAAGGTGTTGACTCTAGGGGAGGCTCTGGAGGAGGGACTGGGGAGAAT
AGAGGGTCTCTGGAGCACCTGCACCAGCAAATGCAGTACCATCCACCACG
CAGGGCCTCGACAGGTACGGGCATCATCATGAGGTCTACGATGATTCCAA
GGGATACTGTGGGCACTGCGATGAAGCAAGCATCTCTCCCACGGCAGCTC
TCACTATCAGCAGACCCACTGCCACTGCCAGTAATCCCACCCTCTGACCC
AGATATCGCCACCGTGGAGGCTTTGCTGTGGAAGGGGGGTGATGGTGACG
TAGAGCAGCACAAGATGGGGGTGGGAGCAGGGGCTGGGGCTGGGGCTGTG
TTGACTTACAGCGGAAAGACCAGTAGCGGTAGTGGCAGCAGTGGCGCCTC
TGGAGTTGGGGAGTCTGGGGTCGAAGCTGGGGTGGAGACAGGGCAGGGAG
ATTCCAGTAGCAGCACGGGGACAACTCCCGAGCGGAAGAGGACTGCCAGC
CACATCAAGCTCCGTCCAAAACCAGAGGAGCTTGATCTTTCACTGCATGA
GGTGATGGGGAGAGGGATAGGCATGCTTTGCTTGACCTTTTGGCAGCTGA
CCTCCATGATCCTTGACTGATCCTTCGTCGATCCTTGAACATTTCCAGCC
ATACCTCTCCACCGCTTCCAACACTGGCACCACAGTGGAGATCTGATGCG
TGCTTTGGCCTCCCAGTTTGACTGGCTCTATTCCCCGGTGACCCCAGTGG
TGTTATTCTTTTGCTTCAGCCCTGCCTCTTTTTTGTAGTGGGCCATGTAC
AGAGGTTACAGAGGGGCTCTGGGGCCATTTTTAGGAGGCCCAGAGCTGAC
CTTGACCCTCCTCTGTGTGACGGAGGTACTATAGGTTTTAGGGGCTCTGG
AGCCCTATCTCCACAGCTATACGCTAACTCTAACCCTGAGCCTGATCCTT
TCTGTGGGTAAGGTGCAAGGGCTAGGTAGGGGCTCTGGAGTCGTGCGTGG
GAGCTCCAGAGATATTGCACATGCACTGCCCAGTACCCACCTGGCCACTC
TGCACCACTCCTAATTTTCTTTTTTTAATTGCTTCTCAAGCGAAGCTGAC
TTACCTAACTTGCCTAACACTGTAGTGCAGTACGCCGTACATGATACACT
GTGTTGTGAAGTACGTGTGAAGAACTTGGGAGCATACGCAGTACATTGAT
GCGTGTGTAGGATTTGCACACCTCCCATGTGTGTGTAGTACCTATGCATA
ACATGGAACATGTACATCACAAGTCAGCATTTCCATCATGTGCATACAAT
GCTGGATTGGCTTTGTTCTCAGATAGTCTAAGAGATGAAGCAAAGTTGTA
CAAGCTTGCCCATGGTAGTCAGGTAAGGGTTGTTTTGTCACAGCCCCCTC
TCTCTCTCTGCCTCTCATCAGCAGCAGGAAGTGGGCATGTCACATGGGTG
ATGCCTGATGATGATTGGGTAATGGTGATCGGCTGATGGTGATGGACTGG
TAGACCACCACCATGGTGGAAATCATTCTGTTCTGTTTCATGGACTTAAC
CCTAACCCTAACTCTAGCCCCTGGACAGGAAACTGCTTCCAGGGGGGGAG
CAACATCATGTATCTAGCCGTTTTCCAAAACCGAACATTATCTCTGCCCC
TACACACCCATAACCCTAGCGGTAACCCTATAATCCTATAATAGGCCCTA
TAACTGACCCTTCCTTACCCCCAGCCCCACCATAACCATGGCCCTTACAG
GCCATCTGCTATGGTGCTATACCTTGTACCTAGTAACCCCAACCCTAGCG
CCTCATCAGAAGGCTTCCAAGGCAACCTGGAGACATCGACCTTAACCCAT
CCTTTAACCCTAACCCTAGCCGTGACCCTCACAACCCAACCATCGAATGT
AACCCTTATTATTAAGGCTGTCTATGATGATGACCTGGAGACACTGCACC
ACCTTCTGGATGAGCTAGCTGAGGAGGCAGAACTAGAGGAGGAAAGGGTG
GGTACTCGTTTGACACGGGGTTAGGGCTAGGGTTAGGGTTAGGGCTAGGG
CATGAGGCACGAGATGTGAATGAAGCGCAGCACTGTTGGGGTCATGGCCT
CATTCCTCATTTTTTTTTGGCAATTGATTTGTTCCTTTTTGTACTAAGCT
GTACCTTACTGAAGTATGTAGCACCAATTTCGCTTGGTTATTTTTCCAAT
AATTTCTAAGAAACGCTTGGATTTTAGATCATTTCCAATCAAATTCGATG
AATCTGATGGCGTGATGATATGATATCGAACTGATTCTGATTAGTGTTTT
ACCATGATGCCATGGTTATTAACCAATCTATTTTTTCATACTTTTGTACA
AGCACCGCAGTATCACCGTGGCAATTTTCAAACTACCCCGTGATTGTCTG
GTACTGTACAATGGAGGGGTAGGGTTGTTTACGGTAGTCCCGTCATGGTA
AGACTACTGTATCTGCGATAGTCTTGATTTTGGTAGTAGCATTTGTTTTT
GTGTGTGTGTGTGTCCCCTTCTTCCCCTCTTTTCCTCTTCTGTGCATCAA
TACTTGGGGAATCCCTCTCCTGGGTCGAAGCGGTATGCCACATGCCATGT
CACACTCAATACATGTCGGTGGTTGCTTTCCTCCTTTCCCACCACGATTG
CTTTGCGATGCTACTGCATAGCTGGTCCCTCAGTGGGGAGGGGGGGGGGT
TAAATTTTTGCAAAGCATTGTACTGTACGGTCGTGCTTCCTTTTTTGTTT
GTTTTTTTTGTTTTTTTCCGATGTGGACGAGGACCTCTAGTTTAGTGCGG
TTTGGTTTGCTTTGGTTTATCCGATCCGTGGCGAAACAGTGAGGTGGGTG
AGGGTCAGAGAAACTGAGAGAGGAAGAAAAAGAAGCTGGTGTAGCACTGT
AGAGCTACTAACTCTACAAAAAGTATCTCTACGGTGAACACCAGCTCTGA
GGGCCCCGCTTTGAGAACAGTCTAAGAGACCTCCGCGGTAGCGAGAGTGA
GCTCAACACCAACAACGACCAATAAGAACAACATCCGCCCCTCCCCCCCC
CCCCCATCCTCCATTTTTCCCTGTTTCCTGTGGACCCAGGCCCTAAGCGG
CGAGAGCAACAACGGGGGGGAGGGAAGCAGCGATACATCTAGTAGTATTG
GGTACAGTAGTGAATACCT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10114:137..4155-

>mRNA_D-mesarthrocarpus_Contig10114.1.1 ID=mRNA_D-mesarthrocarpus_Contig10114.1.1|Name=mRNA_D-mesarthrocarpus_Contig10114.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1560bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10114:137..4155- (Discosporangium mesarthrocarpum MT17_79)
ACGGGCAGGGCCCGGGGAGGGGAAGAGGGAGAAGTCGGGCAGCTTGCAGG
ACTGGGGACTGGGGCGGGGGCAGGGGCTGGGCCAAGTGCAGGGGCAGGGG
CTGGGCCAGGGGCAGATGTGGCAGCCAAGGCCAAGGCCAAGGCCAAGGAG
GGCAAGTCACCAGCAAAACAGTCAGAAAGCTCTGAGGAAGAGGAGTCACT
GGATGCCATCATGAACGAGGGGAGAAAACGGAGAGCGGCGGCGAGGCTCA
CTGCCAAGGACCAGGGAGTGAAGAAGGGGCTGCTGGAGAGGGAGATGAGG
CCTGGGGTGGAGGGTGAGCCTGGGTTGCCTGCTACCAGAACTGGGGGCAG
GATAGGGGGGGGCTCTGGGCCAGTGGGTGGGGCGACCAGGGCACCTGCAG
TGCTGGCAGCCTCTGCAAGAGCCACAGCACAACCACCGGTGGGGCTGTCG
GGGAGGCACAGGAACGCTTCAGAGCCGTCGCTTTCAGAAAAGGGAGTGCA
ATCAGGGGTGGATGTGGAGATTGGGCCAGTGGTGGAAACGGCACAGGGCT
CATCGAAGGCGAAGCCGGACCCGGCGCAGCAGCCCGAGATAGGGGGGGGC
TCCAGCAATGGGCACCAAACAGGCTCTGGGCGCCCTGGGGTGCGTCGGGC
ATCCCTGGGGTCGGTGGTGCAGGTGATCCCTGGCTCCGCAGCTGCTGCCG
CCGAGAAAGTTGTTGCCACCACCACAGGAGGAGAAACAGGCACTTCAGAG
CACCAGCAGGCTGTGACACACAACCGGGTCAGCACCCCGCCGCGCCCTCC
AGAGCCACAGCTGCACTCCAGGGCTGGGGCAGGGCCAGAAGCAGGGGAAA
AGGAAGGTGTTGACTCTAGGGGAGGCTCTGGAGGAGGGACTGGGGAGAAT
AGAGGGTCTCTGGAGCACCTGCACCAGCAAATGCAGTACCATCCACCACG
CAGGGCCTCGACAGGTACGGGCATCATCATGAGGTCTACGATGATTCCAA
GGGATACTGTGGGCACTGCGATGAAGCAAGCATCTCTCCCACGGCAGCTC
TCACTATCAGCAGACCCACTGCCACTGCCAGTAATCCCACCCTCTGACCC
AGATATCGCCACCGTGGAGGCTTTGCTGTGGAAGGGGGGTGATGGTGACG
TAGAGCAGCACAAGATGGGGGTGGGAGCAGGGGCTGGGGCTGGGGCTGTG
TTGACTTACAGCGGAAAGACCAGTAGCGGTAGTGGCAGCAGTGGCGCCTC
TGGAGTTGGGGAGTCTGGGGTCGAAGCTGGGGTGGAGACAGGGCAGGGAG
ATTCCAGTAGCAGCACGGGGACAACTCCCGAGCGGAAGAGGACTGCCAGC
CACATCAAGCTCCGTCCAAAACCAGAGGAGCTTGATCTTTCACTGCATGA
GGCTGTCTATGATGATGACCTGGAGACACTGCACCACCTTCTGGATGAGC
TAGCTGAGGAGGCAGAACTAGAGGAGGAAAGGGCCCTAAGCGGCGAGAGC
AACAACGGGGGGGAGGGAAGCAGCGATACATCTAGTAGTATTGGGTACAG
TAGTGAATAC
back to top