mRNA_D-mesarthrocarpus_Contig10110.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10110.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10110.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.820e-31
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 LGKDWQQSVVLATGSAEGNIHLFDLSKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRR 216
            LG DWQ S+VLATGSA+G+IH+FDLSK QG+E+Q L GH DRVYS DFHP +PKLVS SAD+TV IW P R+
Sbjct:    6 LGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRK 77          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.050e-28
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 LGKDWQQSVVLATGSAEGNIHLFDLSKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRR 216
            LG DWQ S+VLATGSA+G+IH+FDLSK QG+E+Q LRGH DRVYS DFHP +PKLVS SAD+TV IW P R+
Sbjct:  525 LGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRK 596          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.390e-28
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 GKDWQQSVVLATGSAEGNIHLFDLSKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMR 213
            GKDW  S+VLATGSA+GNI+ FD+SK +G ++Q LRGH DRVY+V FHP +P+LVS SAD+TVRIW P +
Sbjct:   47 GKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSK 116          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: F4PVF4_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PVF4_CAVFA)

HSP 1 Score: 89.0 bits (219), Expect = 6.700e-19
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    7 KDWQQSVVLATGSAEGNIHLFDL--SKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRR 216
            +D  QSV+LATGSA+ N +LFD+  SK  G  +Q L GHTDRVYSV FHP +P L SCSAD T+R+W+P ++
Sbjct:  474 EDINQSVLLATGSADYNAYLFDIGFSKQSGRLLQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWSPKKK 545          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: UPI000644D057 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D057)

HSP 1 Score: 88.6 bits (218), Expect = 9.180e-19
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   10 DWQQSVVLATGSAEGNIHLFDL--SKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRR 216
            D  QSV+LATGSA+ N +L+D+  SK  G  MQ L GHTDRVYSV FHP +P L SCSAD T+R+W P ++
Sbjct:  476 DINQSVLLATGSADYNAYLYDIGFSKQSGRVMQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWTPKKK 546          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: F0ZUB1_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZUB1_DICPU)

HSP 1 Score: 88.2 bits (217), Expect = 1.210e-18
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   10 DWQQSVVLATGSAEGNIHLFD--LSKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRRHPNN 228
            D  QSV+LATGSA+ + ++FD  LSK  G+ +Q L GHTDRVYSV FHP +P L SCSAD T+R W P ++  NN
Sbjct:  438 DINQSVLLATGSADYSAYIFDIGLSKQSGKVIQKLEGHTDRVYSVKFHPSEPILASCSADNTIRFWTPKKKIFNN 512          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: D3BUW8_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BUW8_POLPP)

HSP 1 Score: 87.8 bits (216), Expect = 1.740e-18
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   10 DWQQSVVLATGSAEGNIHLFDL--SKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRR 216
            D  QSV+LATGSA+ N +LFD+  +K  G+ +Q L GHTDRVYSV FHP +P L SCSAD T+R+W P ++
Sbjct:  503 DINQSVLLATGSADYNAYLFDIGFTKQSGKVLQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWTPKKK 573          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: A0A8J4PPE8_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PPE8_9MYCE)

HSP 1 Score: 87.4 bits (215), Expect = 2.290e-18
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 LGKDWQQSVVLATGSAEGNIHLFD--LSKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRR 216
            +  D  QSV+LATGS++ N ++FD  LSK  G  +Q L GHTDRVYSV FHP +P L SCSAD T+R+W P ++
Sbjct:  444 ITNDINQSVLLATGSSDYNAYIFDIGLSKQSGRLLQKLEGHTDRVYSVKFHPSEPILASCSADSTIRLWTPKKK 517          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: Q54IS3_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54IS3_DICDI)

HSP 1 Score: 87.0 bits (214), Expect = 3.210e-18
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   10 DWQQSVVLATGSAEGNIHLFDLS--KWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAPMRRHPNN 228
            D  QSV+LATGSA+ N +++D+   K  G+ +Q L GHTDRVYSV FHP +P L SCSAD T+R W P ++  NN
Sbjct:  475 DINQSVLLATGSADYNAYIYDIGFGKQSGKVLQKLEGHTDRVYSVKFHPSEPILASCSADNTIRFWTPKKKIFNN 549          
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 78.6 bits (192), Expect = 3.020e-15
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   16 QQSVVLATGSAEGNIHLFDLSKWQGEEMQVLRGHTDRVYSVDFHPVDPKLVSCSADRTVRIWAP 207
            ++SV+LATGS++  ++L+++ +   E MQ L GHTDRVY+ +FHP +P L SCSAD T+++W P
Sbjct:  422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGP 485          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10110.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF6_ECTSI1.820e-3170.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE1.050e-2872.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA6.390e-2865.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F4PVF4_CAVFA6.700e-1958.33Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
UPI000644D0579.180e-1959.15hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZUB1_DICPU1.210e-1857.33Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
D3BUW8_POLPP1.740e-1857.75Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A8J4PPE8_9MYCE2.290e-1855.41Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
Q54IS3_DICDI3.210e-1854.67Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A8H7Q4N1_MORIS3.020e-1550.00GED domain-containing protein n=1 Tax=Mortierella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10110contigD-mesarthrocarpus_Contig10110:2614..3127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog5786.XP_003291002.1
PFAMsWD40
Model size237
Max annot lvl554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.98e-19
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,3XD7W@554915|Amoebozoa
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_002100.1
DescriptionWD domain, G-beta repeat
Cds size237
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.6909747-CDS-D-mesarthrocarpus_Contig10110:2613..27001680789156.6909747-CDS-D-mesarthrocarpus_Contig10110:2613..2700Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10110 2614..2700 +
1680789156.7111464-CDS-D-mesarthrocarpus_Contig10110:2977..31271680789156.7111464-CDS-D-mesarthrocarpus_Contig10110:2977..3127Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10110 2978..3127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10110.2.1prot_D-mesarthrocarpus_Contig10110.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10110 2614..3127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10110.2.1

>prot_D-mesarthrocarpus_Contig10110.2.1 ID=prot_D-mesarthrocarpus_Contig10110.2.1|Name=mRNA_D-mesarthrocarpus_Contig10110.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=79bp
LGKDWQQSVVLATGSAEGNIHLFDLSKWQGEEMQVLRGHTDRVYSVDFHP
VDPKLVSCSADRTVRIWAPMRRHPNNWK*
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mRNA from alignment at D-mesarthrocarpus_Contig10110:2614..3127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10110.2.1 ID=mRNA_D-mesarthrocarpus_Contig10110.2.1|Name=mRNA_D-mesarthrocarpus_Contig10110.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=514bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10110:2614..3127+ (Discosporangium mesarthrocarpum MT17_79)
CTGGGGAAAGACTGGCAGCAATCCGTGGTGCTGGCCACGGGCAGTGCGGA GGGGAACATCCACCTGTTCGACCTATCCAAGTGGCAGGTACAATGGAGAG CATATTCTTGTCCCCCTGATTCCCCCCTTGGGATCAGTATCGGTGGAGCA ACGAGTGGATTGCATGCCCTCTCCAGAAGGGTCGCTCTCCGGTAGAGTCT GGCAAGCTTTTTTGGCTACTGGAGCGCACACTCTATGTGAAACAGGCGCA CGGCTCCCAGAACTCTCCCGACATCACAAATTCTACCTTTACCCAATGTG TACTGACCGTAGTGCCGTACTGTGCCCGCATGTCTGCGGATTTGTTCCAT GCCTTGCTGCACAGGGGGAGGAGATGCAGGTCTTGCGAGGGCATACAGAC AGGGTGTACTCTGTGGACTTCCACCCCGTTGACCCCAAGCTGGTCTCCTG CAGCGCCGACAGGACGGTGCGGATATGGGCGCCCATGCGCAGGCATCCCA ACAACTGGAAATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10110:2614..3127+

>mRNA_D-mesarthrocarpus_Contig10110.2.1 ID=mRNA_D-mesarthrocarpus_Contig10110.2.1|Name=mRNA_D-mesarthrocarpus_Contig10110.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=237bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10110:2614..3127+ (Discosporangium mesarthrocarpum MT17_79)
CTGGGGAAAGACTGGCAGCAATCCGTGGTGCTGGCCACGGGCAGTGCGGA
GGGGAACATCCACCTGTTCGACCTATCCAAGTGGCAGGGGGAGGAGATGC
AGGTCTTGCGAGGGCATACAGACAGGGTGTACTCTGTGGACTTCCACCCC
GTTGACCCCAAGCTGGTCTCCTGCAGCGCCGACAGGACGGTGCGGATATG
GGCGCCCATGCGCAGGCATCCCAACAACTGGAAATGA
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