mRNA_D-mesarthrocarpus_Contig10110.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10110.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10110.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 8.170e-49
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:    1 STSKCIYTLDSRDPRGVVGTWRCNSFVNSLHVFSNGTKVISADAGGNIITWDSRRGVRVDCYTLEDCIHISHIQASPPDAGRPDEEGQLLAANCFDNTLRVFHRKGTDTPP 333
            STSK IYT+D+RDP GVV  W C +FVNSLHV+S+G+KV+SADA G I+TWD+R G  VD Y+LED IHISHIQASPPDAGR DEEG LLAANCFDNTLRVFHR+  ++ P
Sbjct:  278 STSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLNSRP 388
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BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Match: A0A5D6XXH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.290e-15
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    4 TSK-CIYTLDSRDPRGVVGTWRCNSFVNSLHVFSNGTKVISADAGGNIITWDSRRGVRVDCYT-LEDCIH--ISHIQASPP-DAGRPDEEGQLLAANCFDNTLRVFHRK 315
            TSK CI+ +DSR    VV +W+ ++ VNSL+V  +G  +++ D+ G + TWD R    +D  + L D     ISHI ASPP D  R DE+G+ LAAN +DN LRV+ R+
Sbjct:  199 TSKSCIHQVDSR--ADVVRSWQNDAMVNSLYVSPDGQFIVTGDSKGMLKTWDVRMDACIDDISKLNDPGRHAISHIHASPPVDGRRGDEDGRFLAANSYDNLLRVYDRR 305
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BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Match: A0A2D4BDQ6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ6_PYTIN)

HSP 1 Score: 77.0 bits (188), Expect = 9.960e-14
Identity = 51/118 (43.22%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    4 TSK-CIYTLDSRDPRGVVGTWRCNSFVNSLHVFSNGTKVISADAGGNIITWDSRRGVRVDCYTLEDCIH------------ISHIQASPPDAGRP-DEEGQLLAANCFDNTLRVFHRK 315
            TSK  I+ +DSR    V   W+ N+ VNSL+V  +G  VI+ D+ G I TWD R         +E CI             ISHI ASPP  GR  DE+G+ LAAN +DN LRV+ R+
Sbjct:  214 TSKNAIHMMDSRAE--VCRKWQNNAMVNSLYVSPDGQFVITGDSRGMIKTWDVR---------MESCIEDISRQNDPGNHAISHIHASPPVDGRSGDEDGRFLAANSYDNILRVYDRR 320
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BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Match: A0A8K1CHV1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHV1_PYTOL)

HSP 1 Score: 72.4 bits (176), Expect = 4.170e-12
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   58 TWRCNSFVNSLHVFSNGTKVISADAGGNIITWDSRRGVRVDCYTLEDCIH---ISHIQASPPDAGRP-DEEGQLLAANCFDNTLRVFHRK 315
            TW+ ++ VNSL+V  +G  V++ D+ G I TWD R    ++  + E+      ISHI ASPP  GR  DE+G+ LAAN +DN LRV+ R+
Sbjct:  241 TWQNDAMVNSLYVSPDGQFVVTGDSKGMIKTWDVRMESCIEDISRENDPGRHAISHIHASPPVDGRGGDEDGRFLAANSYDNILRVYDRR 330
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BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Match: A0A507DQL7_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DQL7_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 8.090e-10
Identity = 40/121 (33.06%), Postives = 59/121 (48.76%), Query Frame = 1 
Query:    1 STSKCIYTLDSRDPRGVVGTWRCNSFVNSLHVFSNGTKVISADAGGNIITWDSRRGVRVDCYTLEDCIH-ISHIQASPPDAGR----------------PDEEGQLLAANCFDNTLRVFHR 312
            ++   +  +D R P   + T    + VNSL+V+ + T V+SADA G + TWD R G  V+ +  E     ISH+  S  D G                 PDEE + +A N +DN +RV+ R
Sbjct:  230 TSRNALCMVDRRQPDTAL-TLENEAMVNSLYVYRDATYVLSADAAGQLKTWDVRTGKCVNAFANEPTKKPISHVTVSYNDGGNFSTLTAKLFCMSVSVDPDEEPRYMAVNSYDNVMRVYDR 349
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BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Match: M2X2M9_GALSU (Transducin family protein / WD-40 repeat family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X2M9_GALSU)

HSP 1 Score: 60.8 bits (146), Expect = 4.360e-8
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:   16 IYTLDSRDPRGV-VGTWRCNSFVNSLHVFSNGTKVISADAGGNIITWDSRRGVRVDCYTLEDCIHISHIQASPPDAGRPDEEGQLLAANCFDNTLRVFHRKG 318
            I+ LD R  +   V T  C+  VNS++V  +G  V S D  G I  WD R   +           ISH++ S P   R +EEGQ LA N FDNT+RV+ R G
Sbjct:  232 IHMLDRRTQKSTNVITNDCS--VNSIYVHYDGILVTSGDHRGYIKRWDMRYFSKPLEVFYNSKRPISHLEVSRP---REEEEGQYLAVNAFDNTIRVYDRGG 328
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE8.170e-4972.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XXH4_9STRA2.290e-1544.95Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BDQ6_PYTIN9.960e-1443.22Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A8K1CHV1_PYTOL4.170e-1244.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A507DQL7_9FUNG8.090e-1033.06Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
M2X2M9_GALSU4.360e-840.20Transducin family protein / WD-40 repeat family pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10110contigD-mesarthrocarpus_Contig10110:416..1763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000013554
PFAMsWD40
Model size428
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.71e-18
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,1MDN9@121069|Pythiales
DescriptionSource PGD
Cds size426
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.6415286-CDS-D-mesarthrocarpus_Contig10110:415..5291680789156.6415286-CDS-D-mesarthrocarpus_Contig10110:415..529Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10110 416..529 +
1680789156.6514397-CDS-D-mesarthrocarpus_Contig10110:878..9861680789156.6514397-CDS-D-mesarthrocarpus_Contig10110:878..986Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10110 879..986 +
1680789156.659599-CDS-D-mesarthrocarpus_Contig10110:1557..17611680789156.659599-CDS-D-mesarthrocarpus_Contig10110:1557..1761Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10110 1558..1761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10110.1.1prot_D-mesarthrocarpus_Contig10110.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10110 416..1761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10110.1.1

>prot_D-mesarthrocarpus_Contig10110.1.1 ID=prot_D-mesarthrocarpus_Contig10110.1.1|Name=mRNA_D-mesarthrocarpus_Contig10110.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=142bp
STSKCIYTLDSRDPRGVVGTWRCNSFVNSLHVFSNGTKVISADAGGNIIT
WDSRRGVRVDCYTLEDCIHISHIQASPPDAGRPDEEGQLLAANCFDNTLR
VFHRKGTDTPPVVKAKAGACAGAGARSRARGGGQGGGGNAGV
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mRNA from alignment at D-mesarthrocarpus_Contig10110:416..1763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10110.1.1 ID=mRNA_D-mesarthrocarpus_Contig10110.1.1|Name=mRNA_D-mesarthrocarpus_Contig10110.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10110:416..1763+ (Discosporangium mesarthrocarpum MT17_79)
TCCACTAGCAAGTGCATCTACACATTGGATTCGCGGGACCCCAGGGGGGT
TGTGGGGACCTGGAGGTGTAACTCCTTCGTCAACTCACTGCATGTCTTCT
CCAACGGAACAAAGGTGAGGAACACAGCCACGGTGATGATCAGGGGTGCT
ACAGGGGCGCTCCAGAGCGTGCACGGAGGGGTTGAGGGGGCAGGAGGGGG
GGATCGTCGCCTCAGGCTAATGAGTGCTCCGGAGGGGAGGGGGGGCTCGA
CACGGAAGAGGGCCCTGTGCGGGAGACATCCGAGGTGGCCGGCCTTACCC
AGGGCTGGGTTTGTTGTCATTCCTTGCCAGTTTGCTTGCTTTGAACCATC
GCCACCTCTCCTTCACACCTGTTCCTATTTATGCATGTATACACTTATAT
GTATACATAAATATATGCATGTATAAATGCAGATATATATATATTTTTAA
ACCACATCTCCAGGTAATATCTGCAGATGCTGGCGGGAACATCATCACAT
GGGACTCACGTAGGGGGGTCAGGGTTGATTGCTACACCTTGGAAGACTGC
ATACACATCTCTCACATCCAGGTGGGCTCAGCGGGGGGTGAGGCAGGCAG
GCAATTTGGGTAGCAAGAGCCCCCGCCCGCAGAGTTCGGATCCAGGGCTT
TGCATACTACCACTTGCTGCAGAGGTCATAGGATTGACTGCACAAAAACG
GCAGATGCAGTATTTGCGTGTGTGGTCTAATGTTGCGTTGTACTGCGCAA
AGTATTGTACTGCAGCCCTCAGTACTTTACCAGTACTAGTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTAGT
AGTGGTAGTATTAGTGGTAGTATTAGTGGTAATGGTGATGGTGGTAGTAG
TAGTGGTGATACTAGTAGTAGTAGTGGTAGTACTAGTACTAGTAGGAGTG
GTAGTAGGAGTGGTAGTAGGGGTAGTACTAGTACTAGTAGTACTACTAGT
AGTATATGTTTCCCTCCCACGCTATGCCAGTGAAAAAGGATACGAAATAC
CTTCCCCCTCCCTTCACCTTCCCCCCTTCACATCCCCCCCCTCCGCCCCC
CTCTTAAACTCCCTGCCTGGCCTGTGGCACCAAACAAGACAGGCCTCTCC
CCCAGACGCAGGGCGGCCGGATGAGGAAGGCCAGCTCCTAGCCGCCAATT
GCTTTGATAACACACTCCGTGTCTTCCACCGTAAGGGCACTGACACCCCA
CCAGTGGTAAAAGCCAAGGCTGGCGCTTGCGCTGGGGCTGGGGCCAGGTC
CAGGGCCAGAGGAGGGGGGCAGGGGGGTGGAGGGAACGCTGGAGTGGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10110:416..1763+

>mRNA_D-mesarthrocarpus_Contig10110.1.1 ID=mRNA_D-mesarthrocarpus_Contig10110.1.1|Name=mRNA_D-mesarthrocarpus_Contig10110.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10110:416..1763+ (Discosporangium mesarthrocarpum MT17_79)
TCCACTAGCAAGTGCATCTACACATTGGATTCGCGGGACCCCAGGGGGGT
TGTGGGGACCTGGAGGTGTAACTCCTTCGTCAACTCACTGCATGTCTTCT
CCAACGGAACAAAGGTAATATCTGCAGATGCTGGCGGGAACATCATCACA
TGGGACTCACGTAGGGGGGTCAGGGTTGATTGCTACACCTTGGAAGACTG
CATACACATCTCTCACATCCAGGCCTCTCCCCCAGACGCAGGGCGGCCGG
ATGAGGAAGGCCAGCTCCTAGCCGCCAATTGCTTTGATAACACACTCCGT
GTCTTCCACCGTAAGGGCACTGACACCCCACCAGTGGTAAAAGCCAAGGC
TGGCGCTTGCGCTGGGGCTGGGGCCAGGTCCAGGGCCAGAGGAGGGGGGC
AGGGGGGTGGAGGGAACGCTGGAGTG
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