mRNA_D-mesarthrocarpus_Contig10108.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10108.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10108.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10108contigD-mesarthrocarpus_Contig10108:226..855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size260
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.0248797-CDS-D-mesarthrocarpus_Contig10108:225..4041680789156.0248797-CDS-D-mesarthrocarpus_Contig10108:225..404Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10108 226..404 +
1680789156.0338519-CDS-D-mesarthrocarpus_Contig10108:774..8321680789156.0338519-CDS-D-mesarthrocarpus_Contig10108:774..832Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10108 775..832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.0422468-UTR-D-mesarthrocarpus_Contig10108:832..8551680789156.0422468-UTR-D-mesarthrocarpus_Contig10108:832..855Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10108 833..855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10108.1.1prot_D-mesarthrocarpus_Contig10108.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10108 226..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10108.1.1

>prot_D-mesarthrocarpus_Contig10108.1.1 ID=prot_D-mesarthrocarpus_Contig10108.1.1|Name=mRNA_D-mesarthrocarpus_Contig10108.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=79bp
MQVSSKNSPWRPPTRKTVSSTLLDAEVEDVGARVVKLTDGKKSIFGGALQ
RDGWTEPQASQWSGAASSGATPLATPRT*
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mRNA from alignment at D-mesarthrocarpus_Contig10108:226..855+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10108.1.1 ID=mRNA_D-mesarthrocarpus_Contig10108.1.1|Name=mRNA_D-mesarthrocarpus_Contig10108.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=630bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10108:226..855+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGTCTCGTCAAAGAACTCACCCTGGAGGCCACCTACCCGGAAGAC
TGTGAGTTCTACCTTGCTTGATGCAGAGGTGGAAGATGTTGGAGCACGGG
TGGTGAAGCTCACCGATGGTAAAAAATCTATCTTTGGAGGAGCTTTGCAG
AGAGATGGATGGACCGAACCTCAGGCAAGGTAGGTATCTTCAGCAAACAA
AATAGGAGTGTGTAGTGGATAGCAGTGGAGGGTACTCCACAGTGGCAGAC
GGCTTTCCCCTGCCTGCCCTTCTTGTTTCCCAATTCCCAATTCCCAATGC
GTCAGTATAATATTCTTTAAAATATTGTTGAATAAAGTCATTTACTTTGA
AGTCAGACTCCAGTCAGCAACAATAAATTGCACATCAGAAATATTACACT
TATGACGACCCAGTCATTCAAGCTGGCTGTCATCCATCATCCATCATACG
GAGTACAGAGTATAAACTCACTCCATAATATCACTCTGTACTCCGTACTT
TTTTCTCAACTTGTCGTGCACGGTCACCATATCAACATAATGCTGGCAGT
CAATGGAGTGGAGCGGCTTCTTCAGGTGCAACACCACTCGCCACACCAAG
GACATGACATACCTCGCGGACCTGGTGTCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10108:226..855+

>mRNA_D-mesarthrocarpus_Contig10108.1.1 ID=mRNA_D-mesarthrocarpus_Contig10108.1.1|Name=mRNA_D-mesarthrocarpus_Contig10108.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=237bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10108:226..855+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGTCTCGTCAAAGAACTCACCCTGGAGGCCACCTACCCGGAAGAC
TGTGAGTTCTACCTTGCTTGATGCAGAGGTGGAAGATGTTGGAGCACGGG
TGGTGAAGCTCACCGATGGTAAAAAATCTATCTTTGGAGGAGCTTTGCAG
AGAGATGGATGGACCGAACCTCAGGCAAGTCAATGGAGTGGAGCGGCTTC
TTCAGGTGCAACACCACTCGCCACACCAAGGACATGA
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