mRNA_D-mesarthrocarpus_Contig10107.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10107.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10107.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10107.2.1 vs. uniprot
Match: D8LKZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.480e-26
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 KQILFMCKTHFLSVSPDTRDGWKQYRGQRTFPESKVATGCRPGPDRILGPGG------------EPKYTNPEEDR--NRVHGKNLMWPGKIYHVLYQV 252
            KQI+FMCKTHF +V   TR+GWKQYRG RTFPES++A  CRPGP R LG               +P YTN  +D   NR   K+ +WPGK+Y+VLYQV
Sbjct:   27 KQIMFMCKTHFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGLGAAXXXXXXXXXXSEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNVLYQV 124
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BLAST of mRNA_D-mesarthrocarpus_Contig10107.2.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.040e-20
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   10 LFMCKTHFLSVSPDTRDGWKQYRGQRTFPESKVATGCRPGPDRILGPGG---------EPKYTNPEEDR--NRVHGKNLMWPGKIYHVLYQV 252
            +FMCKT F +V   TR+GWKQYRG RTFPES++A  CRPGP R  G            +P +TN  +D   NR    + +WPGK+Y+VLYQV
Sbjct:    1 MFMCKTRFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGHGAAXXXXXXXSEVDPGHTNHPDDEKGNRGPTNSALWPGKVYNVLYQV 92
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10107.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKZ0_ECTSI1.480e-2654.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE2.040e-2050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10107contigD-mesarthrocarpus_Contig10107:3979..4230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.9768238-CDS-D-mesarthrocarpus_Contig10107:3978..42151680789155.9768238-CDS-D-mesarthrocarpus_Contig10107:3978..4215Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10107 3979..4215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.9880757-UTR-D-mesarthrocarpus_Contig10107:4215..42301680789155.9880757-UTR-D-mesarthrocarpus_Contig10107:4215..4230Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10107 4216..4230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10107.2.1prot_D-mesarthrocarpus_Contig10107.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10107 3979..4215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10107.2.1

>prot_D-mesarthrocarpus_Contig10107.2.1 ID=prot_D-mesarthrocarpus_Contig10107.2.1|Name=mRNA_D-mesarthrocarpus_Contig10107.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=79bp
MCKTHFLSVSPDTRDGWKQYRGQRTFPESKVATGCRPGPDRILGPGGEPK
YTNPEEDRNRVHGKNLMWPGKIYHVLYQV
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mRNA from alignment at D-mesarthrocarpus_Contig10107:3979..4230-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10107.2.1 ID=mRNA_D-mesarthrocarpus_Contig10107.2.1|Name=mRNA_D-mesarthrocarpus_Contig10107.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=252bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10107:3979..4230- (Discosporangium mesarthrocarpum MT17_79)
AAGCAGATCCTCTTCATGTGCAAGACACACTTTCTCAGCGTTTCCCCTGA
CACACGCGATGGCTGGAAACAGTACCGAGGCCAGCGCACCTTTCCCGAGT
CTAAGGTGGCTACTGGTTGCCGCCCCGGCCCCGACCGCATCCTAGGCCCT
GGGGGCGAGCCGAAGTACACCAACCCGGAGGAGGACAGGAACCGAGTTCA
CGGCAAGAACCTCATGTGGCCAGGGAAGATATACCATGTGCTCTATCAGG
TG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10107:3979..4230-

>mRNA_D-mesarthrocarpus_Contig10107.2.1 ID=mRNA_D-mesarthrocarpus_Contig10107.2.1|Name=mRNA_D-mesarthrocarpus_Contig10107.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=237bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10107:3979..4230- (Discosporangium mesarthrocarpum MT17_79)
ATGTGCAAGACACACTTTCTCAGCGTTTCCCCTGACACACGCGATGGCTG
GAAACAGTACCGAGGCCAGCGCACCTTTCCCGAGTCTAAGGTGGCTACTG
GTTGCCGCCCCGGCCCCGACCGCATCCTAGGCCCTGGGGGCGAGCCGAAG
TACACCAACCCGGAGGAGGACAGGAACCGAGTTCACGGCAAGAACCTCAT
GTGGCCAGGGAAGATATACCATGTGCTCTATCAGGTG
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