mRNA_D-mesarthrocarpus_Contig10105.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10105.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10105.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: A0A6H5JR94_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR94_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.890e-13
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:   54 IMYVMDLIITAYLLFDSQARGFISRCELERKLREAERERKGGGGALLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEED 299
            + YV+DL I AY  FD + RGFI++  +E+ LR++E E   G   LLD  +W E AWD G RLSFQEF+Y FS W+ L E+D
Sbjct:  379 VKYVLDLFIAAYFQFDKEGRGFITKSTIEKTLRKSENEP--GVSGLLDKKRWSEAAWD-GDRLSFQEFIYAFSLWLGLLEDD 457
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: A0A7S3XZL5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL5_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 3.130e-11
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 3 
Query:   48 RDIMYVMDLIITAYLLFDSQARGFISRCELERKLREAERERKGGGGALLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEEDGGD 308
            +++ YVM LI+  YLLFD++ RG+I R ++   +RE    ++G         +WGE+ WD  G +SF+EFVY F+ WV++ +ED  D
Sbjct:  199 QELCYVMHLIVGCYLLFDTKGRGYIRRRDVGAAVRERG-GKEGSASGFFSEERWGEMDWDHNGSISFEEFVYAFTRWVDVDDEDEAD 284
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: A0A7S4RCY2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCY2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.870e-8
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 3 
Query:   27 GGLVLYARDIMYVMDLIITAYLLFDSQARGFISRCELERKLREAERERKGGGGALLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEEDGGDEEDE 320
            G L+   ++    M  I+ AYL+FD  A+G+I   +L + L   + +  G    LL   +W EL  D  GR+ FQEFVY FS W  L  ED  DEEDE
Sbjct:  145 GSLLAKDKNFRNAMMDILKAYLIFDRSAKGYIEEADLAKMLTN-DYDDGGATQLLLTDERWKELDVDGSGRVDFQEFVYAFSQWCSL--EDDDDEEDE 239
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: A0A7S3UWH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWH3_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 1.570e-7
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:    6 EVKENRGGGLVLYARDIMYVMDLIITAYLLFDSQARGFISRCELERKLREAERERKGG---GGA-------LLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEEDGGDEED 317
            E +E R   +  Y+ ++   MDL++ AYLLFD    G+I R E+   + E E   +GG   GGA            +W E+  D  G +SF+EFVY FS WV + E++  DEED
Sbjct:  165 ERRERRASLVAEYSAELRGAMDLMVAAYLLFDRPVNGYIDRAEVA-SVFEDEGASQGGSRKGGAPRHASHGFFTEERWAEMDVDGSGLISFEEFVYCFSKWVGVDEDE--DEED 275
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: D8LL80_ECTSI (Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL80_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-6
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 3 
Query:   66 MDLIITAYLLFDSQARGFISRCELERKLREAERERKGGGG-ALLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEEDGGDE 311
            ++L   AYLLFD + +G ISR ++   +  AE  +K  G  ++L   +W E+ WD  G +SF EFVY F+ WV++  ED  DE
Sbjct:  168 LELFTYAYLLFDKECKGVISREQV--MIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADE 248
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: A0A835YSL5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.340e-6
Identity = 43/115 (37.39%), Postives = 57/115 (49.57%), Query Frame = 3 
Query:    6 EVKENRGGGLVLYARDIMYVMDLIITAYL--------------LFDSQARGFISRCELERKLREAER---ERKGGGGALLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEED 299
            E K +R G +    +++ YV+DLII AY                FDS+  GFISR  LE++L  AE          G  L   +W  L W   G+LSFQ+FVY FS W++   ED
Sbjct:  288 ESKRDRRGNV----QELRYVLDLIIAAYFQXXXXXXXXXXXXXXFDSKVEGFISRRRLEQQLEGAEGLQGSEPSTHGTFLYEEQWQSL-WGPDGKLSFQDFVYIFSSWIDFDSED 397
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BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Match: B8BTL1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTL1_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.930e-5
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 3 
Query:    3 EEVKENRGGGLVLYARDIMY--VMDLIITAYLLFDSQARGFISRCELERKLREAERERKGGGGALLDPTKWGELAWDDGGRLSFQEFVYGFSDWVELGEEDGGDEED--EREARPVIRKPLM 356
            EE K+    G +L + D  Y  VM  ++TAYL FD + +G+ +  E    +  +  +R     +L    +W EL  +  G + F+EFVY FS WV+ G  D  DE+D  +R A P+ ++ L+
Sbjct:  138 EEDKDVSTFGGMLASGDDEYRRVMTDVVTAYLSFDREGKGYFTAEEFNGFMTAS--KRADAARSLFTEDRWKELDVNGDGTVQFEEFVYAFSQWVDDGGSDEEDEDDTPKRSANPLTQRILL 257
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10105.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JR94_9PHAE7.890e-1351.22EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XZL5_HETAK3.130e-1140.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4RCY2_9STRA7.870e-840.82Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3UWH3_HETAK1.570e-737.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LL80_ECTSI1.200e-640.96Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YSL5_9STRA2.340e-637.39EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
B8BTL1_THAPS1.930e-533.61Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10105contigD-mesarthrocarpus_Contig10105:2524..4398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps21149
PFAMsEF-hand_5
Model size1063
Max annot lvl2836|Bacillariophyta
KEGG koko:K13448
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.82e-09
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,2XFCN@2836|Bacillariophyta
DescriptionEF-hand, calcium binding motif
Cds size567
COG categoryT
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.892638-UTR-D-mesarthrocarpus_Contig10105:2523..29631680789155.892638-UTR-D-mesarthrocarpus_Contig10105:2523..2963Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10105 2524..2963 -
1680789155.9395509-UTR-D-mesarthrocarpus_Contig10105:4342..43981680789155.9395509-UTR-D-mesarthrocarpus_Contig10105:4342..4398Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10105 4343..4398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.9031363-CDS-D-mesarthrocarpus_Contig10105:2963..33581680789155.9031363-CDS-D-mesarthrocarpus_Contig10105:2963..3358Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10105 2964..3358 -
1680789155.917926-CDS-D-mesarthrocarpus_Contig10105:3850..39711680789155.917926-CDS-D-mesarthrocarpus_Contig10105:3850..3971Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10105 3851..3971 -
1680789155.9301858-CDS-D-mesarthrocarpus_Contig10105:4291..43421680789155.9301858-CDS-D-mesarthrocarpus_Contig10105:4291..4342Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10105 4292..4342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10105.2.1prot_D-mesarthrocarpus_Contig10105.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10105 2964..4342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10105.2.1

>prot_D-mesarthrocarpus_Contig10105.2.1 ID=prot_D-mesarthrocarpus_Contig10105.2.1|Name=mRNA_D-mesarthrocarpus_Contig10105.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=189bp
MYVMDLIITAYLLFDSQARGFISRCELERKLREAERERKGGGGALLDPTK
WGELAWDDGGRLSFQEFVYGFSDWVELGEEDGGDEEDEREARPVIRKPLM
GGVAEVGVDDGEVTPQESMSSQNGEKQGIQGVCKRPVVDGVGSELPDMQE
GLGAAPGMEECNGRRQGGVDENDDWRTSTAAESDGLCF*
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mRNA from alignment at D-mesarthrocarpus_Contig10105:2524..4398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10105.2.1 ID=mRNA_D-mesarthrocarpus_Contig10105.2.1|Name=mRNA_D-mesarthrocarpus_Contig10105.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1875bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10105:2524..4398- (Discosporangium mesarthrocarpum MT17_79)
GGGAGGAGGTGAAGGAGAACAGGGGGGGGGGGCTGGTGCTCTATGCCAGG
GACATCATGTACGTGATGGACCTCATCATCACAGCCTACCTCCTGTTTGA
CAGTCAGGTACAGTGCTTGCTACCCCCAACCCCATGCCTACCCCAGCCAG
CCCTAACCCTTAGATTCGACAACTCCTTGTGGAGGCGATCAGGAAATGAC
TTGATGCGCGTCACACGCGTATGCACGTTTGTTTTTTTTTACACCCTAGT
AAGCCAATCAATGGAGAGCAGGGTCGCGATCTTTCATTTGTTTGAAATCA
AGAAAAACGCTGTGCAAGGAAAAGCCCCGGTAAATGATCAGCGTGGAGCT
CTGTGCATGCAGTCTATCCATGCACACACACACCCGCCACGCCTGCGCTC
AATCCCTCACTGGGTCAACCTTCACAGGCACGTGGGTTTATCTCCCGGTG
TGAGCTGGAGCGGAAGCTCCGGGAGGCTGAGAGAGAGAGGAAGGGCGGCG
GGGGGGCTCTCCTCGACCCTACCAAGTGGGGAGAGTTGGCATGGGATGGT
GAGAGCCGCACGTGTCACTGGAGTGAGTGGAGCATGATTCCATGCTTGTC
TTACCACTGGGTGCTGCTCCCCTGGCACGCCGGCTTGGCTGTCGAGGTTA
TCCACGCAGAGCTATCCGCATAAGGCCAAGCGGCCTGATACTATCCCTTG
CATACCAGGCAAACCATACAATGTACCTGGCATGTAAGGATTTGCTCCAG
AGTTTCCTTGCGGTGCTACAGCACTTGGTGTTTAAAAAGCACAGTGGCAC
ACACCCTTGTACATACACATACCTGGCAGCTGCCAAAGTAGGGTGTACAC
TATTTTCGACGTACTCTGATGTACAGTATGGTGTGATGCTCCAAGCAACA
CTTTGTTGAAGTACCATCTACCTATCTATGCTGCTTGTGCCACCATAGAC
TATCCTGAGTGTACCATATTAATCACCTAATCGCCTCAAGCGAACCCCAT
TACCCCTCCCCCCCCCCCCCCTTTTTGCCCTTCTTCCAAGACGGTGGTCG
GCTATCCTTCCAGGAATTTGTCTATGGCTTCTCTGACTGGGTGGAGCTGG
GTGAGGAGGATGGGGGGGATGAGGAGGACGAGAGGGAAGCTAGGCCCGTG
ATCCGGAAACCTTTGATGGGGGGTGTTGCGGAGGTCGGGGTTGATGATGG
GGAGGTCACCCCACAAGAGAGCATGTCCTCACAAAACGGTGAGAAGCAGG
GAATTCAGGGTGTGTGCAAGAGGCCAGTCGTGGATGGAGTCGGGTCAGAG
TTGCCAGACATGCAAGAAGGGCTGGGTGCTGCTCCAGGAATGGAGGAGTG
CAATGGCAGGCGCCAGGGGGGCGTGGACGAGAATGATGACTGGAGGACTT
CAACAGCTGCGGAAAGTGACGGCTTGTGTTTCTGAAGGGTGGATGTGTCG
CATGATCACAGCAGCTTGGGAGGAGACACCTCCCGTCTGGGTGGGGCCCA
ATGAGTTAGCCATACCTGCCTGCAGGGACGGAGAGCCACCCACAGTTGGA
ACTCTGCCACACCTGGAGGAGTGGGTGCCCATGTAGCTCTCTCTGCCTTC
CTTCCCCCTCTGCTTTTCCCTCTCCGTTCGACTCCGCTCGACTGCAGCTC
TCCTACTAAAGAGTGCGTCAGGAAAGGAACGATTCAGGAGGACACCTTCT
GAACCTCATGTTTTTTGGGTTGTGGGTTGGGTCTTCAGTGTTATTATTGT
TATTAATTATGATTGCCAGTCAGCAATATTTTTACGATCATGCAATTAGT
TCAACTGTGAAAAAAAAACTGGCCAGAGGGCGAGAAAAAAAAAAAAAAGG
AAACAGAGCGCTCGATTTCTTTTCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10105:2524..4398-

>mRNA_D-mesarthrocarpus_Contig10105.2.1 ID=mRNA_D-mesarthrocarpus_Contig10105.2.1|Name=mRNA_D-mesarthrocarpus_Contig10105.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=567bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10105:2524..4398- (Discosporangium mesarthrocarpum MT17_79)
ATGTACGTGATGGACCTCATCATCACAGCCTACCTCCTGTTTGACAGTCA
GGCACGTGGGTTTATCTCCCGGTGTGAGCTGGAGCGGAAGCTCCGGGAGG
CTGAGAGAGAGAGGAAGGGCGGCGGGGGGGCTCTCCTCGACCCTACCAAG
TGGGGAGAGTTGGCATGGGATGACGGTGGTCGGCTATCCTTCCAGGAATT
TGTCTATGGCTTCTCTGACTGGGTGGAGCTGGGTGAGGAGGATGGGGGGG
ATGAGGAGGACGAGAGGGAAGCTAGGCCCGTGATCCGGAAACCTTTGATG
GGGGGTGTTGCGGAGGTCGGGGTTGATGATGGGGAGGTCACCCCACAAGA
GAGCATGTCCTCACAAAACGGTGAGAAGCAGGGAATTCAGGGTGTGTGCA
AGAGGCCAGTCGTGGATGGAGTCGGGTCAGAGTTGCCAGACATGCAAGAA
GGGCTGGGTGCTGCTCCAGGAATGGAGGAGTGCAATGGCAGGCGCCAGGG
GGGCGTGGACGAGAATGATGACTGGAGGACTTCAACAGCTGCGGAAAGTG
ACGGCTTGTGTTTCTGA
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