mRNA_D-mesarthrocarpus_Contig1010.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1010.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1010.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1010.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1010contigD-mesarthrocarpus_Contig1010:17132..17814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.5383968-CDS-D-mesarthrocarpus_Contig1010:17131..173531680789155.5383968-CDS-D-mesarthrocarpus_Contig1010:17131..17353Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 17132..17353 -
1680789155.556211-CDS-D-mesarthrocarpus_Contig1010:17681..177861680789155.556211-CDS-D-mesarthrocarpus_Contig1010:17681..17786Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 17682..17786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.566947-UTR-D-mesarthrocarpus_Contig1010:17786..178141680789155.566947-UTR-D-mesarthrocarpus_Contig1010:17786..17814Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1010 17787..17814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1010.6.1prot_D-mesarthrocarpus_Contig1010.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1010 17132..17786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1010.6.1

>prot_D-mesarthrocarpus_Contig1010.6.1 ID=prot_D-mesarthrocarpus_Contig1010.6.1|Name=mRNA_D-mesarthrocarpus_Contig1010.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=109bp
MEPGSMRGPGVGPKGSMREVPDRRWSRSAPLPENPPPEYAMPIPVYHQRH
LGHQYGPGSGSGAPMEPSANARGQAGDGPGGAERGGGAGHQWEGREGMRK
PGGFKAMQY
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mRNA from alignment at D-mesarthrocarpus_Contig1010:17132..17814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1010.6.1 ID=mRNA_D-mesarthrocarpus_Contig1010.6.1|Name=mRNA_D-mesarthrocarpus_Contig1010.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=683bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:17132..17814- (Discosporangium mesarthrocarpum MT17_79)
CACTAACCCCAACGCTTCGGAGGAATCCATGGAGCCAGGGAGCATGAGAG
GACCGGGTGTGGGTCCCAAGGGTTCCATGAGGGAAGTGCCTGACCGTAGG
TGGTCCAGGTCTGCCCCCTTGCCAGAGAACCCGGTGAGAGGGGTGCCGTA
GACCTATAAACCCTAAACCTAACCCTAACCCTAACCCTAACCAATAGGAA
TGCTAACAAAGTTATAGGTGCGATAAAGGAGATATGCATGTTGGGTTATG
GTTGGGGTTGGGGTTGGGGTTGGGGTTAGGTTTATTTTGTAAGGAACATG
TCAAAGAAGCGTTCAGAAAAGCGTTACCATGGGGATATCCTAATTGGGAG
TGTAAGGGACAGATGGTAGCCCTAATCCTAACCCCAACCCAAACCTAGCC
CCAACCCTTCCCCCCCCCTCTCCCCTGCCCATCCCGATGTTTCTTTGGCA
TTTGCAAGCAGCCACCAGAGTACGCTATGCCCATTCCAGTTTACCATCAG
CGCCACCTCGGCCACCAGTATGGGCCTGGATCTGGCTCTGGGGCACCCAT
GGAGCCGAGTGCGAATGCTCGGGGGCAAGCTGGAGACGGCCCCGGGGGGG
CAGAGAGGGGGGGTGGGGCAGGCCACCAATGGGAAGGCAGAGAGGGCATG
CGCAAGCCGGGGGGTTTTAAGGCCATGCAGTAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1010:17132..17814-

>mRNA_D-mesarthrocarpus_Contig1010.6.1 ID=mRNA_D-mesarthrocarpus_Contig1010.6.1|Name=mRNA_D-mesarthrocarpus_Contig1010.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=327bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:17132..17814- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGCCAGGGAGCATGAGAGGACCGGGTGTGGGTCCCAAGGGTTCCAT
GAGGGAAGTGCCTGACCGTAGGTGGTCCAGGTCTGCCCCCTTGCCAGAGA
ACCCGCCACCAGAGTACGCTATGCCCATTCCAGTTTACCATCAGCGCCAC
CTCGGCCACCAGTATGGGCCTGGATCTGGCTCTGGGGCACCCATGGAGCC
GAGTGCGAATGCTCGGGGGCAAGCTGGAGACGGCCCCGGGGGGGCAGAGA
GGGGGGGTGGGGCAGGCCACCAATGGGAAGGCAGAGAGGGCATGCGCAAG
CCGGGGGGTTTTAAGGCCATGCAGTAC
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