mRNA_D-mesarthrocarpus_Contig1010.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1010.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig1010.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1010.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1010contigD-mesarthrocarpus_Contig1010:15995..17096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size386
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.4633088-CDS-D-mesarthrocarpus_Contig1010:15994..163511680789155.4633088-CDS-D-mesarthrocarpus_Contig1010:15994..16351Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 15995..16351 -
1680789155.4825897-CDS-D-mesarthrocarpus_Contig1010:17068..170801680789155.4825897-CDS-D-mesarthrocarpus_Contig1010:17068..17080Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1010 17069..17080 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.4930842-UTR-D-mesarthrocarpus_Contig1010:17080..170961680789155.4930842-UTR-D-mesarthrocarpus_Contig1010:17080..17096Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1010 17081..17096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1010.4.1prot_D-mesarthrocarpus_Contig1010.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1010 15995..17080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1010.4.1

>prot_D-mesarthrocarpus_Contig1010.4.1 ID=prot_D-mesarthrocarpus_Contig1010.4.1|Name=mRNA_D-mesarthrocarpus_Contig1010.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=123bp
MLEQPAKPHSVPSLSILAENRPSPSPSHGHITSGTSGISSGRNIADPGSA
GSSSTPPSPMVNPGNPSPGSGGWVIGTGAGGFQVKTGAAGTGALGALGGR
MGGSGVAPGAVGRGRMPQSQGLG
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mRNA from alignment at D-mesarthrocarpus_Contig1010:15995..17096-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1010.4.1 ID=mRNA_D-mesarthrocarpus_Contig1010.4.1|Name=mRNA_D-mesarthrocarpus_Contig1010.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1102bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:15995..17096- (Discosporangium mesarthrocarpum MT17_79)
CTACGGCACCCCTGTTATGCTCGAACAGGTGAGTACTAGGCACTGCTGTA
TTGTTAATAAGTAACAGGTGAGTCCTGGGATTAGCCAGTTGTATTAATAC
CCCCCCCCCACACACACACAGGCACACACAACTCTTATGGTAATGCTTGG
TATGAAAGCTTGTCACCCGTGACCCACAGCACACCCACACCAGGGCATGG
TTTCTTGCTCTGAGTTCAAATTGTAGTACTGCATGCAGTACTGTATTGTA
GTTTAGTGTCTATTACAGTACAATACATTGCAGTATAGTACACCGGAGTA
TAATACAAAACATTAGAGCCTAACAAGTTTTTTTAACATGGTGCTGCTTC
AAATTACAGTATCATTTGCAGGTTACATACTTTCTAATTTGATACTTGGA
GTGCGTGGGAATGCATCGAAAGTAATTCAAAATGCTCTGAAGTACTTCAA
TGATACCATATGTCTTTATTAAATCATGCCCCACAGAAGTGGTGACCTCC
CATCTCCAACTCACTAAGACATACAGAGTATAGATCACTGGCAAAAATTC
GTAACACTATATAACCCTAACCCTCAGAAAGCCTTCGAGTGCACAAGCCC
TGCCCCTCTACCCTACCTCTTGCCTCCTATCTCTGCAATAGCTCTATTAT
GACCCCCGCTGCCCCTCCCCCCACCTTCCTTTATCCCCCCCCTGACCTCA
CCTACTGTACCTAATTAAACCGCCTCGAAACCTCCTCCCTAGCAGCCGGC
CAAGCCACACTCCGTCCCCTCCCTGTCCATCTTAGCGGAGAATCGGCCAA
GCCCTAGCCCCAGCCATGGCCACATAACCAGCGGTACCAGTGGCATCAGC
AGCGGAAGGAACATTGCAGACCCTGGGTCTGCTGGCTCCAGCAGTACGCC
TCCCTCCCCCATGGTAAACCCTGGGAATCCTTCCCCCGGCTCCGGGGGCT
GGGTAATTGGCACAGGGGCAGGGGGGTTCCAGGTCAAGACGGGAGCGGCG
GGCACAGGGGCTCTGGGTGCCCTTGGGGGAAGAATGGGGGGCAGCGGTGT
GGCTCCTGGGGCAGTGGGAAGAGGGAGAATGCCCCAGTCACAGGGTCTGG
GG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1010:15995..17096-

>mRNA_D-mesarthrocarpus_Contig1010.4.1 ID=mRNA_D-mesarthrocarpus_Contig1010.4.1|Name=mRNA_D-mesarthrocarpus_Contig1010.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=369bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1010:15995..17096- (Discosporangium mesarthrocarpum MT17_79)
ATGCTCGAACAGCCGGCCAAGCCACACTCCGTCCCCTCCCTGTCCATCTT
AGCGGAGAATCGGCCAAGCCCTAGCCCCAGCCATGGCCACATAACCAGCG
GTACCAGTGGCATCAGCAGCGGAAGGAACATTGCAGACCCTGGGTCTGCT
GGCTCCAGCAGTACGCCTCCCTCCCCCATGGTAAACCCTGGGAATCCTTC
CCCCGGCTCCGGGGGCTGGGTAATTGGCACAGGGGCAGGGGGGTTCCAGG
TCAAGACGGGAGCGGCGGGCACAGGGGCTCTGGGTGCCCTTGGGGGAAGA
ATGGGGGGCAGCGGTGTGGCTCCTGGGGCAGTGGGAAGAGGGAGAATGCC
CCAGTCACAGGGTCTGGGG
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