mRNA_D-mesarthrocarpus_Contig101.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig101.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig101.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig101.5.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.790e-28
Identity = 68/180 (37.78%), Postives = 100/180 (55.56%), Query Frame = 1 
Query:  103 TFIPRSDFSVKVESGLRTALAVSLSFIWRTHGPFNGNLAFFAGVVAIVSVGKTAGETIDRNLQLTCGAILGILSAFLVRWLGSCGRVLGVIAFFFGILVVVSNPWVSPLGKKFGSLAVVILTLTPGAAATNAFPLEWLLSALTWVRTHVEGGVFALVSLLLPYPRFALREGSLRAQVTAR 642
            TF   S+F   +E+ LRT LA + S  W   GP    L FF+ VVAIV    TAG TI  +L    GA+ G   AFL+R +      +  +  F G  ++V    ++ LG+K   + +++  LT       A    W++S L+W ++  EGGV+A ++L++PYPR ALREG+LRAQ T +
Sbjct:    9 TFKAESEFRRSLEAALRTGLAAAASIAWAEVGPIRNPLNFFSPVVAIVVTLDTAGGTIAASLGCLHGALSGAFFAFLIRLIADQNCWVAGLLMFIGFFLIVRRRRLNSLGRKIACVTLIVAVLTFEREDVTA----WIMSMLSWYKSVFEGGVWATLALMVPYPRLALREGALRAQYTCK 184
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig101.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CQ15_9STRA4.790e-2837.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig101contigD-mesarthrocarpus_Contig101:17650..19948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog512565.AMIS_77010
PFAMsFUSC_2
Model size646
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.75e-05
EggNOG OGsCOG4129@1|root,COG4129@2|Bacteria,2GIR7@201174|Actinobacteria,4D95J@85008|Micromonosporales
DescriptionEvidence 4 Homologs of previously reported genes of
Cds size645
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.9321585-CDS-D-mesarthrocarpus_Contig101:17649..177451680789154.9321585-CDS-D-mesarthrocarpus_Contig101:17649..17745Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 17650..17745 +
1680789154.943434-CDS-D-mesarthrocarpus_Contig101:17946..181381680789154.943434-CDS-D-mesarthrocarpus_Contig101:17946..18138Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 17947..18138 +
1680789154.9608343-CDS-D-mesarthrocarpus_Contig101:18359..184781680789154.9608343-CDS-D-mesarthrocarpus_Contig101:18359..18478Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 18360..18478 +
1680789154.9742732-CDS-D-mesarthrocarpus_Contig101:19710..199481680789154.9742732-CDS-D-mesarthrocarpus_Contig101:19710..19948Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 19711..19948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig101.5.1prot_D-mesarthrocarpus_Contig101.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig101 17650..19948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig101.5.1

>prot_D-mesarthrocarpus_Contig101.5.1 ID=prot_D-mesarthrocarpus_Contig101.5.1|Name=mRNA_D-mesarthrocarpus_Contig101.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=215bp
RKLSPESGPQVPHMAEGDGPPGFPRHGWVRPKKPTFIPRSDFSVKVESGL
RTALAVSLSFIWRTHGPFNGNLAFFAGVVAIVSVGKTAGETIDRNLQLTC
GAILGILSAFLVRWLGSCGRVLGVIAFFFGILVVVSNPWVSPLGKKFGSL
AVVILTLTPGAAATNAFPLEWLLSALTWVRTHVEGGVFALVSLLLPYPRF
ALREGSLRAQVTAR*
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mRNA from alignment at D-mesarthrocarpus_Contig101:17650..19948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig101.5.1 ID=mRNA_D-mesarthrocarpus_Contig101.5.1|Name=mRNA_D-mesarthrocarpus_Contig101.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2299bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:17650..19948+ (Discosporangium mesarthrocarpum MT17_79)
AGGAAATTAAGTCCGGAATCGGGACCTCAGGTGCCCCACATGGCAGAAGG
AGATGGGCCACCAGGATTCCCAAGGCATGGATGGGTTCGACCTAAGGTAC
TGGAGGTTGGTCGGAATTAAATGCCGGTGTCGTATTGGATCTGTCCCGGC
TTTGACCTACCCCGTGCATAGGACAAGTAGTACTTTCTCCTTCCCCCTTT
GCACTGTTGTGTCTCATTGGAGGTATCTTGTTGCTTTTTGCTGTCGTCAC
CCTCCGCACATCGTACATCTCGGACAATCCATTCATGTGTCGTGCAGAAG
CCGACCTTCATCCCAAGGAGCGATTTCAGCGTAAAAGTGGAATCCGGGCT
TCGGACAGCCCTGGCTGTGTCGCTTTCGTTCATCTGGCGCACTCACGGCC
CGTTCAACGGCAACCTCGCCTTCTTTGCGGGCGTGGTAGCCATCGTGTCC
GTTGGGAAGACTGCTGGAGAGACGATCGACAGGAATCTGGTGAGCGCTTT
TCCACCTCAGGAGAAGATGTTTTCTTCCCAAGGACCATCACGGACTTCTG
TGCCGCTCAGTTGTGTGCGGCCAGGCCTGGTGGTCCCAACACAGCCATGA
AATAAAGCAGGAGGTGGCCTTTGGTTGCACCAATGCCTATCACGGAGCTT
CTTACCCTTCCCGCCCATGATCCACTGTCTCGCTCTCTCACTGCGCTTAC
CCCATCTCAGCAATTGACCTGTGGTGCCATTTTGGGCATACTGTCCGCGT
TTCTTGTCCGGTGGCTCGGCTCTTGCGGCAGGGTGCTGGGGGTCATAGCA
TTCTTTTTCGGGATTTTGGTGGTGGTGAGGTGAGGCGAGGCCTCGAGTCT
CGAGTCTTTACAGTAGTCAAAAGTATTTAAATGTAAGAGGTGGGTGGGCA
GTTCCTATTTCCAGGCTCTACGAAGGTTCTTTATGCTTGATACAAGAGTC
TCCAGTCTCGACGCGGGGTTCCTTGTGCTCGATTCAAGGATCCATGCTGG
TTTCTCGCTTAATTAGAGTACGGTAGTATGGAGATCATGGAGATATCAAG
GATTTGGAGAGATCTAGCGCTGTCCCATCTCACGTGTTTTCTTCAGAGTA
GAGTATAGAGCCCTACGTGCTTTTACCCTGCTCCAGAGCTCTAGGTACCC
CAGGGCTGCCTCAGGACTAGAGCTCAAGCACCACCACTATGTTGAGCCCC
CTTTCAGCAGTCAGGCCAAGAAGACAGGCACCTTTGCAAGGTCTTTGCCG
ATATCTGATATAGGACTGGCTCTCACGTGCTACTTCAAAGTCTTTCAAGT
GCGTAGGTTTGATGACCCAAGATCCGCTTGTTCTGCGCTGCCGGAGGATG
ACACACGTATGTAGTGTCAAGTAGCTGCATGTAGTGTCAAGTAGCTGTAT
GTAGTGTCCAGTGCCTGTATGTAGTGTCCAGTGCCTGTATGTAGTGTCCA
GTACCTGCATGTAGTGTCCAGTACCTGTATGTAGTGTCCAGTACCTGTAT
GTAGTGTCCAGTACCTGTATGTAGTAGGAAGGACTTTCATTTGAGAACTC
TATTCCAAGCAGCAATGAGTACCAAGTATTATGTAGGGTTCTTCATTGTG
TGTTGTTACATTGTACTCTAACCTTTCATGTGCTCTATTCCTAACCCTAA
CCCTACGTTTCACCGGCTACTTGGAAGTACAGCAGATGTCAGATGCCATG
TCCTTGTCTATGCTCTATTCTGTTTTGGTGTCTTCACTATGGCCTGCAAC
CTCTGACAACTCTGCATGTGTCACACCCCAAGAGCTTGACTTGAGCCTAT
GCTTCCTTGTCCCAACCATAACCCTAACCCTAAAATCAAACTACTCCCAA
AGTAATACTCATAAGTGCTTGAGACTGCCGCGTAGCTTCCCATCTCTACA
GTAAGTGAGAAGTCATTTCTTTCCCTCTTGCCACCGCTTCACGTTCACCA
TGATACTACCCCAACCCTAACCCTAACCCTAATTCTAACCCTAATTCTAA
CCCTAACCCTAACCCTTGTCTCCGTCCTATGCTTCGGCTGGTCCTCACAC
TACCCCTCCAGTAACCCCTGGGTGTCGCCCCTAGGGAAAAAGTTTGGGTC
CCTGGCGGTGGTCATCCTCACCCTGACCCCAGGTGCTGCTGCCACCAACG
CGTTTCCCCTGGAGTGGCTGTTGTCCGCACTAACCTGGGTCCGGACACAC
GTTGAGGGGGGGGTGTTCGCGCTGGTGTCATTGCTGCTGCCCTATCCCCG
CTTTGCCTTGAGGGAGGGGAGCCTGCGTGCACAGGTGACTGCACGCTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig101:17650..19948+

>mRNA_D-mesarthrocarpus_Contig101.5.1 ID=mRNA_D-mesarthrocarpus_Contig101.5.1|Name=mRNA_D-mesarthrocarpus_Contig101.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=645bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:17650..19948+ (Discosporangium mesarthrocarpum MT17_79)
AGGAAATTAAGTCCGGAATCGGGACCTCAGGTGCCCCACATGGCAGAAGG
AGATGGGCCACCAGGATTCCCAAGGCATGGATGGGTTCGACCTAAGAAGC
CGACCTTCATCCCAAGGAGCGATTTCAGCGTAAAAGTGGAATCCGGGCTT
CGGACAGCCCTGGCTGTGTCGCTTTCGTTCATCTGGCGCACTCACGGCCC
GTTCAACGGCAACCTCGCCTTCTTTGCGGGCGTGGTAGCCATCGTGTCCG
TTGGGAAGACTGCTGGAGAGACGATCGACAGGAATCTGCAATTGACCTGT
GGTGCCATTTTGGGCATACTGTCCGCGTTTCTTGTCCGGTGGCTCGGCTC
TTGCGGCAGGGTGCTGGGGGTCATAGCATTCTTTTTCGGGATTTTGGTGG
TGGTGAGTAACCCCTGGGTGTCGCCCCTAGGGAAAAAGTTTGGGTCCCTG
GCGGTGGTCATCCTCACCCTGACCCCAGGTGCTGCTGCCACCAACGCGTT
TCCCCTGGAGTGGCTGTTGTCCGCACTAACCTGGGTCCGGACACACGTTG
AGGGGGGGGTGTTCGCGCTGGTGTCATTGCTGCTGCCCTATCCCCGCTTT
GCCTTGAGGGAGGGGAGCCTGCGTGCACAGGTGACTGCACGCTAA
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