mRNA_D-mesarthrocarpus_Contig101.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig101.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig101.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig101.2.1 vs. uniprot
Match: D7FIE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.090e-30
Identity = 89/243 (36.63%), Postives = 121/243 (49.79%), Query Frame = 2 
Query:  122 LLLFVMVGIDIVLRESGVNAHGQGQCVLGGFVTSC-RSQGLMQARPLLRRTVPSSSQSSFTAR------EGVVMCGGRASGWSKRSGAGGAAMVTFDF----PSFDEFLYITTKGIVWGTLFTLIPQWTKERLREKEMGLDMDE------MAEEEGLEDLIN---YVCATCDNTNEVDCKECQGKGFFVREDAQPKKCDYCDGLGRVSCPVCEERREKLKDLRRRRRVRPYELPPVEEDVGPW 790
            + LF   G++  +R +G  A G    V G       R +G  Q     +  + +++  SFTAR          + G       +R+G G    + F      P F  +L+ T + ++ G    LIP+ T ER+REKE G+  DE        ++E  ++  N   YVC TCDNTN+V+C EC GKGFFV   A PKKC YC+GLG   C  CEERRE L+  R  RR  P ELPP   D  P+
Sbjct:   10 IALFYCDGVESFVRRTG-RASGTPGFVAGAVAFQRKRPRGSRQGASGSQTPLAAAAAGSFTARTVKSQSNWFEVTGEGRRRTQRRTGGGHGTRMLFGLHFQPPEFSVWLHGTVQAVMLGGFAALIPKVTAERIREKEEGMVRDEDYAAGLWDDDEDFDEYGNAGGYVCPTCDNTNQVECSECGGKGFFVSASAMPKKCTYCNGLGTFDCEDCEERREMLRRERGARRP-PRELPPARGDDFPF 250
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BLAST of mRNA_D-mesarthrocarpus_Contig101.2.1 vs. uniprot
Match: A0A835ZG76_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG76_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.060e-13
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:  563 CATCDNTNEVDCKECQGKGFFVREDAQPKKCDYCDGLGRVSCPVCEER 706
            C  CD   E++C+EC+GKGFFV +DA P+KCD C GLG++ CP+CEER
Sbjct:  109 CTACDGALEIECRECRGKGFFVAQDAMPRKCDACGGLGKLPCPLCEER 156
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig101.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIE3_ECTSI3.090e-3036.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZG76_9STRA1.060e-1360.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig101contigD-mesarthrocarpus_Contig101:2875..6469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1821
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-11_001580.1
Cds size693
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig101.2.1prot_D-mesarthrocarpus_Contig101.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig101 2978..5444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.840238-UTR-D-mesarthrocarpus_Contig101:2874..29771680789154.840238-UTR-D-mesarthrocarpus_Contig101:2874..2977Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig101 2875..2977 +
1680789154.89537-UTR-D-mesarthrocarpus_Contig101:5444..64691680789154.89537-UTR-D-mesarthrocarpus_Contig101:5444..6469Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig101 5445..6469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.8511832-CDS-D-mesarthrocarpus_Contig101:2977..32391680789154.8511832-CDS-D-mesarthrocarpus_Contig101:2977..3239Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 2978..3239 +
1680789154.8616314-CDS-D-mesarthrocarpus_Contig101:3387..36111680789154.8616314-CDS-D-mesarthrocarpus_Contig101:3387..3611Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 3388..3611 +
1680789154.872231-CDS-D-mesarthrocarpus_Contig101:3789..39081680789154.872231-CDS-D-mesarthrocarpus_Contig101:3789..3908Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 3790..3908 +
1680789154.8846736-CDS-D-mesarthrocarpus_Contig101:5356..54441680789154.8846736-CDS-D-mesarthrocarpus_Contig101:5356..5444Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig101 5357..5444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig101.2.1

>prot_D-mesarthrocarpus_Contig101.2.1 ID=prot_D-mesarthrocarpus_Contig101.2.1|Name=mRNA_D-mesarthrocarpus_Contig101.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=231bp
MGFRATLLLFVMVGIDIVLRESGVNAHGQGQCVLGGFVTSCRSQGLMQAR
PLLRRTVPSSSQSSFTAREGVVMCGGRASGWSKRSGAGGAAMVTFDFPSF
DEFLYITTKGIVWGTLFTLIPQWTKERLREKEMGLDMDEMAEEEGLEDLI
NYVCATCDNTNEVDCKECQGKGFFVREDAQPKKCDYCDGLGRVSCPVCEE
RREKLKDLRRRRRVRPYELPPVEEDVGPWR*
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mRNA from alignment at D-mesarthrocarpus_Contig101:2875..6469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig101.2.1 ID=mRNA_D-mesarthrocarpus_Contig101.2.1|Name=mRNA_D-mesarthrocarpus_Contig101.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3595bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:2875..6469+ (Discosporangium mesarthrocarpum MT17_79)
GTTATATGGTTCAACCCGCACGAGCATAGGTTCACTGTCATGTTGTACGG
CCATCCGAGGCCGTAGACCGTTCATCCGGGGTCGCAGCGGACTGCAAGCC
ACCATGGGTTTCAGAGCCACGTTGCTACTATTTGTAATGGTAGGGATAGA
CATCGTGCTCCGTGAATCGGGGGTGAATGCGCACGGACAGGGACAGTGCG
TGCTCGGTGGGTTTGTGACCTCCTGCCGAAGTCAGGGTTTGATGCAAGCC
AGGCCGTTGCTGAGGAGGACAGTGCCCTCGTCGTCTCAGAGTAGCTTCAC
CGCTCGAGAGGGTGTCGTGATGTGTGGGGGGAGAGCTTCTGGCTGGAGTA
AACGCTCTGGAGCTGGTGAGAGCACGTGTGGCATACTTCCGAGCTCTGCC
CCAAGACTTGCCCATCCCTGTGCGAACACACAGTCTTCCTTTTCTACCCT
TGCCAACTCTTTGCGTGAACGACCGATGTGCCGCATCCTTTGGGGTTGGG
AAACGGTGTGCAGGTGGAGCTGCCATGGTTACTTTCGATTTCCCGTCCTT
CGACGAGTTCCTGTACATTACCACCAAGGGGATTGTGTGGGGTACCCTGT
TCACTCTAATTCCCCAATGGACCAAGGAGAGACTGAGGGAGAAGGAAATG
GGCTTGGATATGGATGAAATGGCAGAGGAGGAGGGGCTAGAGGATCTTAT
TAACTATGTCTGTGCAACCTGCGACAACACCAATGAGGTACGAAGTTCGT
TGCATGTTGATCATGGTTTCCCCCTCTCAATTTCATTTTGTGGCGCTGCT
TGCGCAAACGCAAAATAAACCCGCCGGAATCCTCAGCCCCGGGTTACGTT
ATGGACCCTCGAATCCTCAATTTCTGGATGATCGTTGCATTTATGTCGTT
TTTGTCCTGCCTTAGGTAGACTGCAAGGAGTGCCAAGGGAAGGGGTTCTT
TGTGAGAGAGGATGCGCAGCCCAAGAAGTGCGACTACTGTGATGGGCTGG
GGAGAGTCAGCTGCCCCGTGTGCGAAGAAAGGAGGTGAGACCACCGGGAG
GGCGGAGGGGAGGGGGGACCATTTCCAGACAGAGAACAAGTAGGAGGGGT
GACAATAAGAGGGGGGGTGCTGGTGAATGTGGTTGTCGCCTCTAGACTCA
TGGTACGGGTACCCTCGTTAGTTGAAATCTTGGTAATGTTGTTGATTGTT
TCATAGTTTTTTTAATCGATTGATGTGTAAGCTCTGCAGGACTGTGCCCT
GTCGCGTACCTCAAGGAATGAACCCTAATCCCACCTAAACCCAAAGAACT
TTTGGAGTAGCAGAGCAAGACCTCTGCACGTTGGGCACAAGACCTCTGTA
CTTGGAAGTGCCCAATGTGCAGAGGTCTTGACTTCCGTGGCATGTAGTAC
AATGATTTCAAAGTGCCTTACCTAGAAAGAAACTCTTTATATCAAGTACT
TGATTACAGTGGACGAAAACAGCCTCTAGTTGAGGACAGAGGAGAAAAAC
TAAGAAATGTAACTGATAGTGGAAGACCACAAAGGAAGAAAAGTTAAGCA
ACTATGCCTGGACCACGTGGGCTGGGTGGTGAGGAAGGGTTGTGTTGGTA
GTAGTGGGTGCTAAATTAACGTTGTTGGTATTAACCTGTTTGCCAGTGAT
TGACATTTTTGGAAATAAATTAAACTTTGTGTAGAATAGACCAACCAATT
CCACACCAGTCATGGAAAACATTAATTTTGCATGCAGCGTGCAGTATGTA
TTAAACAGGAAAAATAAAGATCATGTTCCAGTGGCGAACAGTCAACCTGC
TTGTTACAGAGGGGGCCCAATTGACGCTTTTTGGATAAAAAATTGTCAAT
TGGGGATTCATTGTCCCAGCACTCACGGCAGACAGAAACTCAAAACATTT
ATCCCTAACCCTAAATGAGGGTTACAAGGCTTCGGTGGTGAGGGGGTTAA
TAGTTGGGTTTGGGTTAGGATGAGGGGTGAGAAAAGAAAAACACACGATT
TATATCTTAATAAATCCTCAAGGACCTCTACAGTAGCTCAAAACTCCTGC
AAAAACCAGCTAGGGTTAGGGTTGGATTGACCATACAGTCGTCCATCATC
GGTGATTGGCTTCTGTATTGATTTTTGCTCCTCTTGAGCTACGGTAGTGG
AGCTATTTGAATTGACATGGTACTCACAAAGCACTGGCTGATTCCCCTGT
CGTGGCTGTGAATGGCATAGCTGTAGACCCTTCAATCCCACTCTGAGAAG
AAACACCGAGTTATGTGCATCAGGTGTTATCATTAGGCTAGTTTGTAGAG
CTACCAACCCTAATCCTATGGAGCATGATCACGGCCGCCATTGCTGCATA
TCACAATAGCAACCGCCTGTTCACCCAGTTCGCTCTTGCCTGATACATGC
TAATAGCAAGCCCGCTGTGTTCCCCATGTTGCCCAAACACTTGCACACCA
ACATTGTTGTTTGGTCCACTGGGGACCTCCAGGGAGAAGCTCAAGGATTT
AAGGCGACGAAGGAGAGTTAGGCCTTATGAACTTCCCCCAGTAGAGGAGG
ATGTGGGCCCATGGCGATAGATTCCTGCTTGATGCTCCCGTTGTGTTGGA
CTCAGCTACCCTAAACCTAAGCCTCTCCATATTTTTTTGTTTTGGCTTGT
GCCTGAAAAAGCGCTTTCTTCTCAAAATGGAGGCTAAGTGACAGGCAATA
GGGTAGCTGTAGCTCATCAAGCACTCTGGGTTGCTCCTGAATAGTTTTTC
TCCAGATCAAGCATGGTACCCTCCAGCTGTACTATCGAGTCGAGTGGAAG
ACCGATAACCCTAACCCTAACTTGATGCGAATGGGTTGTTTCGTTCTTAG
GGTTAGGGGTTTTCGATATACATGTTGCCCTATAGAGGTCTAGGGCTTGT
GTATAGCTTGAATTTGACCAGAACAGTCATGAATGCACCCTTGGCTGTGT
GCCCCACAAGATCTGACAGACAACGGACATAAACCATAGCCTTAAAAGGG
CACAGTATCCAGAATCAAGGACTGACGCGTGTGTGTGTAGTGGGAGGAAA
CCACCTGGTTCCTCGGCATCCTGGTCAAACTTGTCAGCTTTTGAGTTCAG
AGGAGAGGCTTCCATCAAGGTGCAAGGCTCACCGCTTTACCTGGTACAGT
ATGTAGTACGAAGTCAAGGTAACATGTTCTTCTGAGCGGTGCCGTAAGGT
GGCAGGGCATCTGCACCCTTTGGAGGGGTATCGTTATCGGCCTAACCCTA
TCTCTAACCCTCAATTAGCGCCCTACAGCAGAGTACGTCCGACATGTCGG
AACGTAAGGAGTGCGGAGAGATAGATAACGCTTTTTGTTGTTTTGTCTTC
GTCAAACTGTGTAAGGCTTAGGGTTAGGAATATCCTCCCCCTCTCCCCCT
TATATGCCGTCTGTCTGATGGTCAGAGTTTGGGTCCGCAATGTTGTTCCA
TTGAGGGTGGGGTACCAGTTTATCAGGTCGACCAAAGTCCAGGTTTCATC
CGCAGCATGTGGTACAACAGTACTCGGGAAGTACTACAAGTTGATAAAAA
CACAGTAGCAGAGCTTCGGCTCCAAATTGCTCTGTTTCACTCTTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig101:2875..6469+

>mRNA_D-mesarthrocarpus_Contig101.2.1 ID=mRNA_D-mesarthrocarpus_Contig101.2.1|Name=mRNA_D-mesarthrocarpus_Contig101.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=693bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:2875..6469+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGTTTCAGAGCCACGTTGCTACTATTTGTAATGGTAGGGATAGACAT
CGTGCTCCGTGAATCGGGGGTGAATGCGCACGGACAGGGACAGTGCGTGC
TCGGTGGGTTTGTGACCTCCTGCCGAAGTCAGGGTTTGATGCAAGCCAGG
CCGTTGCTGAGGAGGACAGTGCCCTCGTCGTCTCAGAGTAGCTTCACCGC
TCGAGAGGGTGTCGTGATGTGTGGGGGGAGAGCTTCTGGCTGGAGTAAAC
GCTCTGGAGCTGGTGGAGCTGCCATGGTTACTTTCGATTTCCCGTCCTTC
GACGAGTTCCTGTACATTACCACCAAGGGGATTGTGTGGGGTACCCTGTT
CACTCTAATTCCCCAATGGACCAAGGAGAGACTGAGGGAGAAGGAAATGG
GCTTGGATATGGATGAAATGGCAGAGGAGGAGGGGCTAGAGGATCTTATT
AACTATGTCTGTGCAACCTGCGACAACACCAATGAGGTAGACTGCAAGGA
GTGCCAAGGGAAGGGGTTCTTTGTGAGAGAGGATGCGCAGCCCAAGAAGT
GCGACTACTGTGATGGGCTGGGGAGAGTCAGCTGCCCCGTGTGCGAAGAA
AGGAGGGAGAAGCTCAAGGATTTAAGGCGACGAAGGAGAGTTAGGCCTTA
TGAACTTCCCCCAGTAGAGGAGGATGTGGGCCCATGGCGATAG
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