mRNA_D-mesarthrocarpus_Contig10097.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10097.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10097.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.910e-15
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:   10 MLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            ML  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:    1 MLVGELWECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 107
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  133 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVIVVRSDNGG 241
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-14
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD+GG
Sbjct:  180 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDDGG 288
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.750e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:   30 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 138
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5L8P7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.780e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  352 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 460
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.790e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  339 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 447
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  698 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 806
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.810e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  533 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 641
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.810e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  546 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 654
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.810e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    4 GIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLES---TPSLRGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLTVRSDEGG 321
            G  L  +L  C G +  K +   I + T+TRAV  L+RVF+DL       SL G  Y  IV+DDY+R+ RVY L+ KSDA  A +R+LAE     A   ++ VRSD GG
Sbjct:  689 GTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGG 797
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10097.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7U9_9PHAE2.910e-1544.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYF9_9PHAE1.000e-1444.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L158_9PHAE1.250e-1444.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGN1_9PHAE1.750e-1444.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L8P7_9PHAE1.780e-1444.04Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L060_9PHAE1.790e-1444.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE1.800e-1444.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.810e-1444.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.810e-1444.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.810e-1444.04Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10097contigD-mesarthrocarpus_Contig10097:134..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0QZP2
PFAMsHelitron_like_N,PIF1
Model size321
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.09e-08
EggNOG OGsCOG0507@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0987@2759|Eukaryota,2XG4E@2836|Bacillariophyta
DescriptionPIF1-like helicase
Cds size321
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.6282668-CDS-D-mesarthrocarpus_Contig10097:133..4541680789154.6282668-CDS-D-mesarthrocarpus_Contig10097:133..454Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10097 134..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10097.1.1prot_D-mesarthrocarpus_Contig10097.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10097 134..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10097.1.1

>prot_D-mesarthrocarpus_Contig10097.1.1 ID=prot_D-mesarthrocarpus_Contig10097.1.1|Name=mRNA_D-mesarthrocarpus_Contig10097.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=107bp
MGIMLTTDLTTCPGYAMGKTIRSRIRSSTTTRAVSPLERVFMDLESTPSL
RGMLYDAIVRDDYSRFMRVYPLRVKSDAYTALQRFLAEINTLKANHVLLT
VRSDEGG
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mRNA from alignment at D-mesarthrocarpus_Contig10097:134..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10097.1.1 ID=mRNA_D-mesarthrocarpus_Contig10097.1.1|Name=mRNA_D-mesarthrocarpus_Contig10097.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=321bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10097:134..454- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTATCATGCTCACGACAGATCTTACAACCTGCCCGGGGTATGCTAT
GGGCAAGACCATTCGATCACGCATTCGATCTTCAACAACCACGCGAGCGG
TGAGTCCCTTGGAGCGTGTATTCATGGACTTGGAGTCAACTCCCTCTCTT
AGAGGGATGTTGTACGATGCCATAGTCCGCGACGACTATTCAAGGTTCAT
GAGGGTGTATCCCTTAAGGGTCAAGTCAGATGCCTACACTGCTCTTCAAC
GTTTTCTGGCGGAAATCAACACCCTTAAAGCAAATCACGTTCTCTTGACG
GTTCGGTCTGATGAAGGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10097:134..454-

>mRNA_D-mesarthrocarpus_Contig10097.1.1 ID=mRNA_D-mesarthrocarpus_Contig10097.1.1|Name=mRNA_D-mesarthrocarpus_Contig10097.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=321bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10097:134..454- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTATCATGCTCACGACAGATCTTACAACCTGCCCGGGGTATGCTAT
GGGCAAGACCATTCGATCACGCATTCGATCTTCAACAACCACGCGAGCGG
TGAGTCCCTTGGAGCGTGTATTCATGGACTTGGAGTCAACTCCCTCTCTT
AGAGGGATGTTGTACGATGCCATAGTCCGCGACGACTATTCAAGGTTCAT
GAGGGTGTATCCCTTAAGGGTCAAGTCAGATGCCTACACTGCTCTTCAAC
GTTTTCTGGCGGAAATCAACACCCTTAAAGCAAATCACGTTCTCTTGACG
GTTCGGTCTGATGAAGGGGGG
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