mRNA_D-mesarthrocarpus_Contig10094.1.3 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10094.1.3
Unique NamemRNA_D-mesarthrocarpus_Contig10094.1.3
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Match: D7G420_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G420_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.940e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  376 LSRSLDKRMLPRFRHIRNKNIEPSFERHKWVITTYTDQQFTKWLSGQG 519
            LSRSLDKRMLPR + +R K+IEP F  HKWV++TYTD+QFT+WL G+G
Sbjct:  350 LSRSLDKRMLPRAQQMREKDIEPRFGPHKWVVSTYTDKQFTRWLEGRG 397
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BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Match: A0A7J0FB30_9ERIC (GTP binding protein beta 1 n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FB30_9ERIC)

HSP 1 Score: 61.6 bits (148), Expect = 2.100e-6
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:  178 LEPKLGWIKSRLEASQEEVRLLILRFPLIFGYSTLKNLDPTVDFFFKELHGTIVEIRKAVLSCPAILSRSLDKRMLPRFRHIRNKNIEPSFERHKWVITTYTDQQF-TKW 504
            LE K+ W    L  S++E   +  R P IFGYS  +NL P +++   E+   I E++      P     SL+KR++PR  H++ +N+E S +R    +  ++D++F  KW
Sbjct:  535 LEEKI-WFLRGLGLSRDESARVCARLPAIFGYSVKRNLGPKIEYLVSEMKREIEELKVF----PQYFGFSLEKRIVPRHLHLKQRNVEVSLKR----MLMWSDERFYAKW 635
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BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Match: A0A834ZIL5_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZIL5_9MAGN)

HSP 1 Score: 59.3 bits (142), Expect = 4.020e-6
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  187 KLGWIKSRLEASQEEVRLLILRFPLIFGYSTLKNLDPTVDFFFKELHGTIVEIRKAVLSCPAILSRSLDKRMLPRFRHIRNKNIEPSFERHKWVITTYTDQQF-TKW 504
            K+ +++S L  S EE   +  R P IFGYS   NL P  D+  KE+  ++ ++++     P   + SL+KR++PR  H++ +N+E   +R    +  ++DQ+F  KW
Sbjct:  181 KIRFLES-LGLSYEESARICARLPPIFGYSIENNLRPKFDYLVKEMKRSVEDLKRF----PQYFAFSLEKRIVPRHLHLKERNVEVPLQR----MLLWSDQRFYAKW 278
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G420_ECTSI1.940e-1168.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7J0FB30_9ERIC2.100e-632.73GTP binding protein beta 1 n=1 Tax=Actinidia rufa ... [more]
A0A834ZIL5_9MAGN4.020e-632.71Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10094contigD-mesarthrocarpus_Contig10094:319..4162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G420
PFAMsmTERF
Model size1448
Max annot lvl2759|Eukaryota
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.19e-12
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Descriptiontermination of mitochondrial transcription
Cds size1446
COG categoryS
BRITEko00000,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.491434-CDS-D-mesarthrocarpus_Contig10094:318..4661680789154.491434-CDS-D-mesarthrocarpus_Contig10094:318..466Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10094 319..466 +
1680789154.5061324-CDS-D-mesarthrocarpus_Contig10094:1126..11821680789154.5061324-CDS-D-mesarthrocarpus_Contig10094:1126..1182Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10094 1127..1182 +
1680789154.515179-CDS-D-mesarthrocarpus_Contig10094:2192..22731680789154.515179-CDS-D-mesarthrocarpus_Contig10094:2192..2273Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10094 2193..2273 +
1680789154.5259306-CDS-D-mesarthrocarpus_Contig10094:3001..41621680789154.5259306-CDS-D-mesarthrocarpus_Contig10094:3001..4162Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10094 3002..4162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10094.1.3prot_D-mesarthrocarpus_Contig10094.1.3Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10094 319..4162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10094.1.3

>prot_D-mesarthrocarpus_Contig10094.1.3 ID=prot_D-mesarthrocarpus_Contig10094.1.3|Name=mRNA_D-mesarthrocarpus_Contig10094.1.3|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=482bp
GAQVPKAHGLPAPCSCHPQDLMAEEHAGPGQARAPEGKTMTPPRICQGEG
ILSRSVDDCLEPKLGWIKSRLEASQEEVRLLILRFPLIFGYSTLKNLDPT
VDFFFKELHGTIVEIRKAVLSCPAILSRSLDKRMLPRFRHIRNKNIEPSF
ERHKWVITTYTDQQFTKWLSGQGRAPWPTPQTPVAPVAAGAGVGAPPMLP
GAPRAPVSPATTGTPEPPVSSAVNPSPVHLHTTLPGPLPPPPTPPPPLLN
RHQPPGRMTVPGVAPAVAPGGSGAGAGVVVMASMSNPTDIEGVPLPPAHP
QGLDGVTTSGSLMSSVGQPETAGSGGEVNAGLTGLAARHSGLTVGQEKLS
MGQTESAPGQAGLAALGQKGTEDKGSGRDQFVVATGGRGSEGSATGEVES
TPGKANSDEPETSGTELSLPRAKGPSIQGLGEPGARGENQAKAAPWPEGG
QDGAGATTGTGSREQATGATKDRWGDTAEALS
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mRNA from alignment at D-mesarthrocarpus_Contig10094:319..4162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10094.1.3 ID=mRNA_D-mesarthrocarpus_Contig10094.1.3|Name=mRNA_D-mesarthrocarpus_Contig10094.1.3|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3844bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10094:319..4162+ (Discosporangium mesarthrocarpum MT17_79)
GGTGCTCAAGTACCCAAGGCTCATGGCCTACCGGCACCGTGCTCATGTCA
CCCCCAAGACCTCATGGCTGAAGAACACGCTGGGCCTGGACAAGCTCGAG
CTCCGGAAGGCAAGACGATGACCCCACCCAGGATCTGCCAGGGGGAGGGT
AGGGGAGGGGGAGGATGCTGCTGAAGCACCATACGAGGGAAATCTTGTGC
AGGGGCGGGAACTGGGGTCAGGTTGGGAGTCAGGTTTGGGGTTGGGGTTG
GGAAAAACATAACGCACCAAGGGTAGGCAACTGTCATACAAAGCTACACA
AAGAGATCAGTATGCTGTGCAAAGGAGGGGAGGTTTGGTGCCAGGCCTGG
GATTAGGGTTAGGGTTCATGTCCGGGGGGTAACATGGTAAGTATGGGTGG
GTAGCTGTCACACAAGGCCAAGAATCAATCCATTGATATCCTGCCCGGCA
GGGGGGAGTTTTTGAGACTGGCTTGAGGTTTGGGATTAGGGGTTTAGGGT
TGCAAGGGATAGAAAAACAAGGCGCTGATGAAGCACGCTGTGTCTTGTGT
CTGGTCAGGCAGGCCCAGGGGCAGCCACGTGGCTTGTGCGACTGCCACAA
AGAGAACGGCTGTTGACTCCACATAGGTTTTGGAGGAGGCAGCAGGCGGG
TGTGTTCCGTTTTTTCGGGGTTTTTTTCCCAACCCTTTTTTTGTCTCCTC
GATGCACAGTCACCCCCTCCCGTCCTGGATTTTATCATCGGTCAGTAGTG
CGCCCAATCCCTGTCCTTGTCCCTGTCACTGCCCCACAGCTGATCCACAC
CTACCCAGGGATACTGAGCCGCAGCGTTGATGACTGCCTGGAACCGAAGC
TTGGCTGGATTAAGGTGACAAAGCCCGCCGCAGGAGCCACCTGCGTCAGC
ACCAGTGGCGCAGCAGCTCTTTGCTGTTACTATTTCCGTTACTTAATCCT
GCTGCAGCAGTGTGGTTTGTTTTTGTATGCCTTTGTAATGGCACCCAAGA
GCTTTTCCGTGGCCTCTTTCCCTCACTATGTGCATGTACCTTAACTGCAT
TTACTCCCTAGTCCTCCCAGCCCTCTGAAGCATAGGTTAAATTGTGGCTT
TTTGTCATTTGGGATAATATTGGGTATAGTATACAATCAGGAACTCATTG
TTTTGGTGACTCAACTTTTAGGTGCCCATATTGTCTTACCAGTGGTTGAG
GGGTTAACGCCATTGTATAACACCACAATTTTTTCATGATGAAAATCAAT
CTTTGCCTCAAGCAATAATTATTTTTTCGACCCTCCCTCACTTGCCATAG
TGCTGAGGAAAACTGTCGTGAGGTGGTGGCACAGTTAGGGTTAGAGGGTT
TTGGTGTGTGTGTCTCCATCTGTTCCTATCTTTCTGTATAGGCTAGTGCT
ATATAGCCACTGTCTGCCAAAGGGCTTCTTTTTTGCTGGCTCCAGGGATC
AGGAGAAGATGAGGCAATGACCTTTTTCCGCTCCCCTCCGTTCAGTATTT
TTGGTATGTGTTCATGTTCTTGATTAGTTCTTAGTTAAAGTAATTGATTC
TCTCTTTATTTTATTGGTAAGCATTTGTATGTTATGCTGAAATTCTCTTT
TCTATTTTGCCATTATTACAATAATTTCTGTGTTTCCTGTCTACAATAAA
AGAGTCATGCATTGTGGGCGCAAGAGGATGTATCCTCGCATTCCCAATTA
ATATCCCAAGGATAAAGACCAATGGCCAATGACACAACACCAATACCAAT
ATGCAAACACCACCAACAAACGCCATTATTACACACCAACCCCGTAACAC
TTGATACTAACCCTAACCCTAACACCACTGCCTGGCACGGTTGCACGCCC
TCTTTATTCCCTTTCTCCGAGCAGTCCAGGCTCGAGGCATCCCAGGAGGA
AGTACGGCTATTGATCCTACGCTTTCCTCTCATCTTCGGATACAGCACAC
TCAAGGTTCAGACTTAGGGCTCCCTGGGGTTCACTTTCTGGATGTGAAAG
TGGGGGGGGGGGAGGGGGAGGGGGAGGTAATTCTGCTTTGGAGGCAGCAA
GGGAAAACCTGGGTAGAGTTTTTTTTTTTCTCGGTCAGATTAGGATTTTA
TCGGATGGCAGGAGGTGTGACCCTCACGGGTCAGGCAGGGCTTGCTGTGC
TCTCTCTCTCTACTTTGTTTCTCTTGCCTCTTGAGAGAAAAGAGTCAGTA
CAAAAGAGCCAGCGTTTGTCCGTCTCGCGTACACTGCACCTGGAAGTATG
GAAGCATTTGTTAACACACTAGGACCGGTGGGGGGGGGAGGAGGGGTTGT
TGCTGTGCAGGGTGGTGTGCATGTTTTTCCTCAGAGGAGGAAAGCCCGGT
GTGGTGAACTTGCAAAAACCTTCGGAGAGCAGCCTCATGGTGATCCCTCC
AAGAATGAATTTGTGCTTCCCCTGTTCCTTCCCTCCCACGTGAGGTTTTA
CTGACATGCCCCCCTGCCCATCATCCCCCGCCTACCCATCTGCCTTTCCC
GTCCTATCTCCCCCTGTTGTGTTAGTTCTAGCTGGCGCTGAAGCCCCCTG
GTTAAGTTAAACGATGCAGAAGAATCGCCTTCTACCTCTCTCTCCTCCCC
TTTCCCTTGCCCCCCCTCACCTGGTTTCATGGGAATGTCTTACTGCCATG
CCCCCCCCCCCCTCTGCTCCCCTGCCATGGAAGAACCTGGACCCCACCGT
GGACTTCTTCTTCAAGGAGCTCCATGGCACCATCGTGGAGATCCGTAAGG
CGGTGTTGTCGTGCCCCGCCATCCTCAGCCGCAGCCTCGACAAACGCATG
CTCCCCCGCTTCCGCCACATCCGCAACAAGAACATCGAGCCCTCCTTTGA
GCGACACAAGTGGGTGATCACCACCTACACGGACCAGCAGTTCACCAAGT
GGCTCTCGGGGCAGGGGAGGGCCCCGTGGCCAACGCCCCAGACCCCTGTA
GCCCCCGTGGCGGCTGGGGCAGGGGTAGGAGCCCCACCCATGCTGCCTGG
GGCACCCAGAGCCCCTGTTTCCCCTGCAACCACAGGCACCCCGGAGCCTC
CAGTATCGTCAGCTGTGAACCCATCTCCCGTTCACCTCCACACCACCCTC
CCCGGGCCCCTCCCCCCTCCCCCAACCCCACCCCCCCCATTGTTAAATCG
CCACCAGCCCCCAGGTCGCATGACAGTGCCTGGGGTGGCTCCAGCAGTGG
CTCCAGGGGGGAGTGGGGCCGGGGCTGGGGTAGTGGTGATGGCTTCCATG
TCGAACCCTACAGATATCGAAGGTGTTCCTCTACCACCCGCACACCCACA
GGGTCTTGATGGGGTCACAACCTCTGGGTCACTAATGTCAAGCGTGGGGC
AGCCAGAAACAGCGGGTTCAGGGGGAGAAGTGAACGCAGGTTTGACAGGA
CTAGCCGCAAGACATTCAGGGTTGACCGTTGGACAGGAGAAGTTGTCTAT
GGGGCAGACAGAGTCGGCCCCGGGGCAGGCAGGATTGGCTGCCTTAGGGC
AAAAGGGCACAGAAGACAAAGGGTCAGGAAGAGATCAATTTGTGGTAGCC
ACAGGAGGAAGGGGCTCAGAGGGGTCGGCCACTGGGGAGGTAGAGTCAAC
CCCAGGAAAGGCAAATTCAGATGAACCAGAAACATCTGGTACTGAACTGA
GTTTGCCGCGGGCGAAAGGGCCCAGCATACAGGGGCTTGGAGAACCTGGT
GCAAGGGGTGAAAACCAGGCAAAAGCAGCCCCATGGCCAGAAGGAGGGCA
GGATGGAGCTGGGGCAACCACGGGGACGGGAAGCAGGGAACAGGCGACAG
GTGCAACGAAGGATCGGTGGGGGGACACTGCAGAGGCACTCTCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10094:319..4162+

>mRNA_D-mesarthrocarpus_Contig10094.1.3 ID=mRNA_D-mesarthrocarpus_Contig10094.1.3|Name=mRNA_D-mesarthrocarpus_Contig10094.1.3|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1446bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10094:319..4162+ (Discosporangium mesarthrocarpum MT17_79)
GGTGCTCAAGTACCCAAGGCTCATGGCCTACCGGCACCGTGCTCATGTCA
CCCCCAAGACCTCATGGCTGAAGAACACGCTGGGCCTGGACAAGCTCGAG
CTCCGGAAGGCAAGACGATGACCCCACCCAGGATCTGCCAGGGGGAGGGG
ATACTGAGCCGCAGCGTTGATGACTGCCTGGAACCGAAGCTTGGCTGGAT
TAAGTCCAGGCTCGAGGCATCCCAGGAGGAAGTACGGCTATTGATCCTAC
GCTTTCCTCTCATCTTCGGATACAGCACACTCAAGAACCTGGACCCCACC
GTGGACTTCTTCTTCAAGGAGCTCCATGGCACCATCGTGGAGATCCGTAA
GGCGGTGTTGTCGTGCCCCGCCATCCTCAGCCGCAGCCTCGACAAACGCA
TGCTCCCCCGCTTCCGCCACATCCGCAACAAGAACATCGAGCCCTCCTTT
GAGCGACACAAGTGGGTGATCACCACCTACACGGACCAGCAGTTCACCAA
GTGGCTCTCGGGGCAGGGGAGGGCCCCGTGGCCAACGCCCCAGACCCCTG
TAGCCCCCGTGGCGGCTGGGGCAGGGGTAGGAGCCCCACCCATGCTGCCT
GGGGCACCCAGAGCCCCTGTTTCCCCTGCAACCACAGGCACCCCGGAGCC
TCCAGTATCGTCAGCTGTGAACCCATCTCCCGTTCACCTCCACACCACCC
TCCCCGGGCCCCTCCCCCCTCCCCCAACCCCACCCCCCCCATTGTTAAAT
CGCCACCAGCCCCCAGGTCGCATGACAGTGCCTGGGGTGGCTCCAGCAGT
GGCTCCAGGGGGGAGTGGGGCCGGGGCTGGGGTAGTGGTGATGGCTTCCA
TGTCGAACCCTACAGATATCGAAGGTGTTCCTCTACCACCCGCACACCCA
CAGGGTCTTGATGGGGTCACAACCTCTGGGTCACTAATGTCAAGCGTGGG
GCAGCCAGAAACAGCGGGTTCAGGGGGAGAAGTGAACGCAGGTTTGACAG
GACTAGCCGCAAGACATTCAGGGTTGACCGTTGGACAGGAGAAGTTGTCT
ATGGGGCAGACAGAGTCGGCCCCGGGGCAGGCAGGATTGGCTGCCTTAGG
GCAAAAGGGCACAGAAGACAAAGGGTCAGGAAGAGATCAATTTGTGGTAG
CCACAGGAGGAAGGGGCTCAGAGGGGTCGGCCACTGGGGAGGTAGAGTCA
ACCCCAGGAAAGGCAAATTCAGATGAACCAGAAACATCTGGTACTGAACT
GAGTTTGCCGCGGGCGAAAGGGCCCAGCATACAGGGGCTTGGAGAACCTG
GTGCAAGGGGTGAAAACCAGGCAAAAGCAGCCCCATGGCCAGAAGGAGGG
CAGGATGGAGCTGGGGCAACCACGGGGACGGGAAGCAGGGAACAGGCGAC
AGGTGCAACGAAGGATCGGTGGGGGGACACTGCAGAGGCACTCTCA
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