mRNA_D-mesarthrocarpus_Contig10089.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10089.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10089.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: A0A6A5A6A6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6A6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 9.650e-20
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 AVARPRMISD-GVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMP-RPPGHTVFVQQDGAKPH 261
            AVARPR   + G  F GKIG+WP  + V A R+S+NR KGT++L P A+ AE Y+  ++DKV+PAI+A+MP R  G  +++QQD A PH
Sbjct:  111 AVARPRFDHNKGSMFSGKIGVWPFVEQVVAQRNSRNRPKGTVLLVPQAVTAEVYRTMILDKVVPAIQAKMPQRVQGSLIYLQQDNASPH 199          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 93.6 bits (231), Expect = 3.780e-19
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  281 EAIQAKAVDS--IILETQPANSPDLYVNDLGFFHSIQQLKEDVGVSSPEDMV*ATMEAFDVYPRETLERVWQSLFAVLGEVLASKGDNSYKLPHLGKENLGRTGKLPV 598
            E +QA + D   I L  QP NSPDL V DLGFF SIQ L+ +   ++ E++V A  ++FD YP E L RV+ +    + E++  KGDN YK+PH+GK+ L R G LP+
Sbjct:  234 EFMQAASKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREGTLPL 341          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: UPI0007EF40B3 (uncharacterized protein LOC108194535 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF40B3)

HSP 1 Score: 92.4 bits (228), Expect = 1.920e-18
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  308 SIILETQPANSPDLYVNDLGFFHSIQQLKEDVGVSSPEDMV*ATMEAFDVYPRETLERVWQSLFAVLGEVLASKGDNSYKLPHLGKENLGRTGKLPV 598
            +I L  QPANSPDL +NDLGFF  IQ L+ +   ++  ++V A +EA++     TL  VW SL   + E+L   G+N+YKLPH+GK  L R G+LP 
Sbjct:  336 NITLANQPANSPDLNINDLGFFRVIQGLQHEKAPTTVCELVGAVLEAYEEVSDSTLNHVWLSLMGCMTEILRKDGNNNYKLPHIGKGKLERLGQLPT 432          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: A0A6A4Z6G2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z6G2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.250e-18
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 AVARPRMISDGV-WFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            AVARPR  +     FDGKIGIWP  + VAA+RSSKNR KGT+ LT  ++ A+ Y+D ++++V+PAI+ +MPR  G  V +QQD A PH
Sbjct:   20 AVARPRYDAHKKQMFDGKIGIWPFVEEVAAVRSSKNRPKGTLELTTQSVNADVYQDMVMNEVVPAIQVKMPR--GVVVKLQQDNASPH 105          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: A0A6A5AB40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AB40_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.450e-17
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 AVARPRMISD-GVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            A+AR R   D G W DGKIG W   + V  +R S+ R  GTM+  P ++  E YK  ++DKVIPAIKA+ P+     V +QQD +KPH
Sbjct:   48 AIARLRWDHDKGEWLDGKIGTWHFTERVPTLRGSRKRPAGTMVTNPVSVTREVYKTMLLDKVIPAIKAKWPKGETKGVIIQQDNSKPH 135          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: A0A6A4ZTP8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZTP8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-16
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 AVARPR--MISDGVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            AVARPR       +W DGKIG WP  +   A R SKNR KG  +  P  +  + Y+ ++IDKVIPAIK++ P    HT+++QQD AKPH
Sbjct:   48 AVARPRWDFKRHRMW-DGKIGTWPFIEHTVAQRRSKNRDKGAPITKPMNVTKKVYRQYLIDKVIPAIKSQWPGQHHHTIYLQQDNAKPH 135          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: W4GSH9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GSH9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.420e-16
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 AVARPRMISDGVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            AVA PR       +DGKIGIWP  + VAA+RSSKNR KGT+ LT  ++ A+ Y+D ++++V+PAI+ +MPR  G  V +QQD A PH
Sbjct:  122 AVACPR-------YDGKIGIWPFVEEVAAVRSSKNRPKGTLELTTQSVNADVYQDMVMNEVVPAIQVKMPR--GVVVKLQQDNASPH 199          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: A0A485LTD1_9STRA (Aste57867_25464 protein n=4 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTD1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.470e-16
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 AVARPRMISD-GVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            AVARPR I D G+W+DGKIG WP  ++V A R+S NR  GT    P  +  + Y++F+IDKV+PAI A+ P+    TV +Q D A+ H
Sbjct:  212 AVARPRYIHDTGLWWDGKIGTWPFVESVTAQRASVNRPAGTYETKPITVTKDVYREFIIDKVLPAIAAKWPKI-DRTVLLQHDNARAH 298          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: V9FYR7_PHYPR (Uncharacterized protein (Fragment) n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=V9FYR7_PHYPR)

HSP 1 Score: 82.8 bits (203), Expect = 2.110e-16
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 VARPRM-ISDGVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            VARPR        FDGKIGIWPI + + A+RSS NR KGTM+    ++    Y+ F+++KV P+I+A+MP     TV VQQD A PH
Sbjct:   60 VARPRYDFHRKQHFDGKIGIWPIVEKIEALRSSINRPKGTMITKNVSMTRTLYRKFLVEKVFPSIRAKMPARRWSTVVVQQDNAGPH 146          
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Match: W4FF64_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FF64_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.230e-16
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 AVARPRMISD-GVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDFMIDKVIPAIKARMPRPPGHTVFVQQDGAKPH 261
            AVARPR     GV FDGKIG+WP  D V A+RSS+NR  GT++ T   + A  Y+D++I+KV+PAIKA  P      V +QQD A PH
Sbjct:  188 AVARPRFDEGRGVLFDGKIGMWPFVDLVPAVRSSRNRPAGTLVTTLVNVNANVYRDYVINKVVPAIKASFPST-NKRVILQQDNATPH 274          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10089.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5A6A6_9STRA9.650e-2051.69Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI0007F012D13.780e-1946.30uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
UPI0007EF40B31.920e-1846.39uncharacterized protein LOC108194535 n=1 Tax=Daucu... [more]
A0A6A4Z6G2_9STRA3.250e-1853.41Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AB40_9STRA4.450e-1746.59Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4ZTP8_9STRA1.110e-1648.31Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4GSH9_9STRA1.420e-1651.72Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LTD1_9STRA1.470e-1648.86Aste57867_25464 protein n=4 Tax=Aphanomyces stella... [more]
V9FYR7_PHYPR2.110e-1649.43Uncharacterized protein (Fragment) n=4 Tax=Phytoph... [more]
W4FF64_9STRA2.230e-1652.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10089contigD-mesarthrocarpus_Contig10089:3931..4528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008870373.1
Model size598
Max annot lvl157072.XP_008870373.1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.67e-18
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.1955407-UTR-D-mesarthrocarpus_Contig10089:3930..41831680789154.1955407-UTR-D-mesarthrocarpus_Contig10089:3930..4183Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10089 3931..4183 -
1680789154.217363-UTR-D-mesarthrocarpus_Contig10089:4510..45281680789154.217363-UTR-D-mesarthrocarpus_Contig10089:4510..4528Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10089 4511..4528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.2056508-CDS-D-mesarthrocarpus_Contig10089:4183..45101680789154.2056508-CDS-D-mesarthrocarpus_Contig10089:4183..4510Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10089 4184..4510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10089.2.1prot_D-mesarthrocarpus_Contig10089.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10089 4184..4510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10089.2.1

>prot_D-mesarthrocarpus_Contig10089.2.1 ID=prot_D-mesarthrocarpus_Contig10089.2.1|Name=mRNA_D-mesarthrocarpus_Contig10089.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=109bp
MISDGVWFDGKIGIWPIADTVAAMRSSKNRKKGTMMLTPAAIIAERYKDF
MIDKVIPAIKARMPRPPGHTVFVQQDGAKPHTGGGGHGGNSSKGGGQHHP
GNPACQLT*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10089:3931..4528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10089.2.1 ID=mRNA_D-mesarthrocarpus_Contig10089.2.1|Name=mRNA_D-mesarthrocarpus_Contig10089.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=598bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10089:3931..4528- (Discosporangium mesarthrocarpum MT17_79)
GCTGTGGCAAGGCCTAGGATGATCTCCGATGGGGTGTGGTTTGACGGCAA GATCGGTATCTGGCCCATCGCGGATACTGTGGCGGCAATGCGCAGCAGTA AGAACCGCAAGAAGGGCACTATGATGCTGACACCAGCTGCGATAATCGCG GAAAGGTACAAGGATTTCATGATCGATAAGGTCATCCCCGCAATCAAGGC GAGAATGCCTAGACCACCAGGTCACACAGTCTTCGTGCAGCAGGATGGTG CAAAGCCGCACACGGGGGGGGGTGGCCATGGAGGCAATTCAAGCAAAGGC GGTGGACAGCATCATCCTGGAAACCCAGCCTGCCAACTCACCTGACCTCT ACGTGAACGATCTTGGATTCTTCCACTCCATCCAGCAGCTGAAGGAGGAT GTGGGAGTGTCTTCTCCTGAGGATATGGTTTAGGCCACAATGGAGGCCTT CGATGTCTACCCCCGGGAGACACTTGAACGAGTCTGGCAGAGCCTGTTCG CAGTTCTTGGGGAAGTCCTTGCCTCTAAGGGTGATAATAGCTACAAGTTG CCCCATTTGGGCAAGGAGAACCTCGGTAGGACAGGCAAACTTCCGGTC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10089:3931..4528-

>mRNA_D-mesarthrocarpus_Contig10089.2.1 ID=mRNA_D-mesarthrocarpus_Contig10089.2.1|Name=mRNA_D-mesarthrocarpus_Contig10089.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=327bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10089:3931..4528- (Discosporangium mesarthrocarpum MT17_79)
ATGATCTCCGATGGGGTGTGGTTTGACGGCAAGATCGGTATCTGGCCCAT
CGCGGATACTGTGGCGGCAATGCGCAGCAGTAAGAACCGCAAGAAGGGCA
CTATGATGCTGACACCAGCTGCGATAATCGCGGAAAGGTACAAGGATTTC
ATGATCGATAAGGTCATCCCCGCAATCAAGGCGAGAATGCCTAGACCACC
AGGTCACACAGTCTTCGTGCAGCAGGATGGTGCAAAGCCGCACACGGGGG
GGGGTGGCCATGGAGGCAATTCAAGCAAAGGCGGTGGACAGCATCATCCT
GGAAACCCAGCCTGCCAACTCACCTGA
back to top