mRNA_D-mesarthrocarpus_Contig1008.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1008.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig1008.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1008.3.1 vs. uniprot
Match: A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-11
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 2 
Query:  389 SLGGLEQLPGLVTGLMFKHTSEAERMMRLASALAGQMRSQVSRVQAILSDAWQLHLSETAAGRSSPSMPGRTHPPPTTPCSRTTS 643
            +LGGLE+LPG    L+ KHT+E ER+MRL  AL  QMR QVSRV+ +L++AWQLH S+ A     P  P    P PT P +++ S
Sbjct:   95 NLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRS 179
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1008.3.1 vs. uniprot
Match: D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.960e-10
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  389 SLGGLEQLPGLVTGLMFKHTSEAERMMRLASALAGQMRSQVSRVQAILSDAWQLHLSETAAGRSSPSMPGRTHPPPTTP 625
            +LGGLE+LPG    L+ KHT+E ER+MRL  AL  QMR QVSRV+ +L++ WQLH S+ A     P  P    P P  P
Sbjct:   95 NLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLP 173
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1008.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYC3_9PHAE1.160e-1150.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPK5_ECTSI1.960e-1050.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1008contigD-mesarthrocarpus_Contig1008:5776..7144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size766
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000930.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.5624382-CDS-D-mesarthrocarpus_Contig1008:5775..60331680789153.5624382-CDS-D-mesarthrocarpus_Contig1008:5775..6033Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1008 5776..6033 -
1680789153.5742226-CDS-D-mesarthrocarpus_Contig1008:6636..67111680789153.5742226-CDS-D-mesarthrocarpus_Contig1008:6636..6711Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1008 6637..6711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.5863755-UTR-D-mesarthrocarpus_Contig1008:6711..71441680789153.5863755-UTR-D-mesarthrocarpus_Contig1008:6711..7144Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1008 6712..7144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1008.3.1prot_D-mesarthrocarpus_Contig1008.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1008 5776..6711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1008.3.1

>prot_D-mesarthrocarpus_Contig1008.3.1 ID=prot_D-mesarthrocarpus_Contig1008.3.1|Name=mRNA_D-mesarthrocarpus_Contig1008.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MFKHTSEAERMMRLASALAGQMRSQVSRVQAILSDAWQLHLSETAAGRSS
PSMPGRTHPPPTTPCSRTTSSLSGVTNIGGGPHDQDVMLPLPSPVEEVAL
GEVSTPGHGEV
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1008:5776..7144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1008.3.1 ID=mRNA_D-mesarthrocarpus_Contig1008.3.1|Name=mRNA_D-mesarthrocarpus_Contig1008.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1369bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:5776..7144- (Discosporangium mesarthrocarpum MT17_79)
AGGGAGAGGAAGATGCTCAGCGTGCTCTCAACTCAGTTTGTCACCTCCTC
GACCGCATGCTCCTGCTGGACCCACAAGAGAAGGCAAGCCCACCTAGGGT
TGCCCTCATGCTTATCTTCCAGACTCTGAAACAACCCCAAACCTCATCCT
AAATTGCGGTGCTCTTGTGTGGATATGCATAGAACTACCCGTGACTAGGG
TCAATCGAGTATGTTGCCGCTCCACTTTTGTCCAAACAGAGGCAGCTGTG
TAGCTGCTTCACTTGATTAGGTTGATACTATCATTGTGCTCCAGGACTAG
GTACATGCTTGTTCCCAGTGTTTCGGAAGGTGTGTCAGTCACAGTGTATG
TGGCCCGCTCGTGACGGCAGGGAGATAGGGGTTGCAACAGCCTCGGTGGC
TTGGAGCAGTTGCCAGGGCTGGTGACGGGACTCATGTTTAAGCACACATC
GGAGGCAGAGCGGATGATGCGACTTGCCTCTGCTCTTGCCGGTCAGATGA
GATCTCAGGTAGATACCCCACCTTGTTGCCCTTTGCCCTTGTATTTTTGT
TGTTGAGAAAGCCCTTCCTGATAAGAACCTTGAGGCTGCCTGTCCCCTTC
CTATCTTCTCGGGATGTTGGCGCGATCATGTTGTTGCTTCTTTGCCGTGG
AGTCTCTTCTGGAATTTTTGTTGTTCAAGCTGTAGTGTCCATAATAAGTC
TTGCATGTGTGGATAGTGGACCTGACTACCTTCTCTTTTAGAGGATCAAA
TGTGCACCCTCCGAGCAGCTCAATTTTTGATACTCCCGAGTTCTTGATAC
TATATGCTGTACATAAGAGGTGTTCACTTCAATATGAAACCTCCTGCTAC
ACTGTTCACATGCGGACTGAAATATGGGTCAATTGAGGCACCTCTCATGA
CATCTTCATGTAGCCGATTTAAAACAAAATCCCTGTCTTGGTACTGTCTT
AGTGTTACGTGCACAATAGCAGTTTTTTGCGCACAGTAAGTGATTAACTA
AATCTCATTAACTGCCACCGCCACCGTGAGCAGCTCCTCCCTTCACCGTC
CATTCCTCTTCCAACCCTCCTTGTCCTTGGGCTGACCTTCTCAACCCCTT
TTGGAGGAAAGGTTTCCCGTGTGCAAGCCATCCTGTCGGATGCTTGGCAG
TTACACCTCTCTGAAACGGCAGCGGGCCGCTCATCCCCAAGCATGCCTGG
AAGGACGCACCCCCCGCCAACCACACCCTGCTCTAGGACTACCTCTAGTC
TCAGTGGAGTGACTAATATTGGCGGTGGTCCGCATGACCAGGATGTGATG
CTCCCACTCCCCAGCCCCGTAGAAGAGGTGGCTCTTGGGGAAGTCTCCAC
CCCTGGCCATGGAGAAGTC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1008:5776..7144-

>mRNA_D-mesarthrocarpus_Contig1008.3.1 ID=mRNA_D-mesarthrocarpus_Contig1008.3.1|Name=mRNA_D-mesarthrocarpus_Contig1008.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:5776..7144- (Discosporangium mesarthrocarpum MT17_79)
ATGTTTAAGCACACATCGGAGGCAGAGCGGATGATGCGACTTGCCTCTGC
TCTTGCCGGTCAGATGAGATCTCAGGTTTCCCGTGTGCAAGCCATCCTGT
CGGATGCTTGGCAGTTACACCTCTCTGAAACGGCAGCGGGCCGCTCATCC
CCAAGCATGCCTGGAAGGACGCACCCCCCGCCAACCACACCCTGCTCTAG
GACTACCTCTAGTCTCAGTGGAGTGACTAATATTGGCGGTGGTCCGCATG
ACCAGGATGTGATGCTCCCACTCCCCAGCCCCGTAGAAGAGGTGGCTCTT
GGGGAAGTCTCCACCCCTGGCCATGGAGAAGTC
back to top