Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1008.3.1 vs. uniprot
Match:
A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE)
HSP 1 Score: 74.3 bits (181), Expect = 1.160e-11
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 2
Query: 389 SLGGLEQLPGLVTGLMFKHTSEAERMMRLASALAGQMRSQVSRVQAILSDAWQLHLSETAAGRSSPSMPGRTHPPPTTPCSRTTS 643
+LGGLE+LPG L+ KHT+E ER+MRL AL QMR QVSRV+ +L++AWQLH S+ A P P P PT P +++ S
Sbjct: 95 NLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRS 179
BLAST of mRNA_D-mesarthrocarpus_Contig1008.3.1 vs. uniprot
Match:
D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI)
HSP 1 Score: 70.5 bits (171), Expect = 1.960e-10
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 2
Query: 389 SLGGLEQLPGLVTGLMFKHTSEAERMMRLASALAGQMRSQVSRVQAILSDAWQLHLSETAAGRSSPSMPGRTHPPPTTP 625
+LGGLE+LPG L+ KHT+E ER+MRL AL QMR QVSRV+ +L++ WQLH S+ A P P P P P
Sbjct: 95 NLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLP 173
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1008.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.16e-11 / Id = 50.59 Expect = 1.96e-10 / Id = 50.63 Sequence A0A6H5KYC3_9PHAE D7FPK5_ECTSI
Match Name E-value Identity Description
A0A6H5KYC3_9PHAE 1.160e-11 50.59 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FPK5_ECTSI 1.960e-10 50.63 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 766 Hectar predicted targeting category other localisation Exons 2 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-12_000930.1 Cds size 333
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789153.5624382-CDS-D-mesarthrocarpus_Contig1008:5775..6033 1680789153.5624382-CDS-D-mesarthrocarpus_Contig1008:5775..6033 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1008 5776..6033 - 1680789153.5742226-CDS-D-mesarthrocarpus_Contig1008:6636..6711 1680789153.5742226-CDS-D-mesarthrocarpus_Contig1008:6636..6711 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1008 6637..6711 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789153.5863755-UTR-D-mesarthrocarpus_Contig1008:6711..7144 1680789153.5863755-UTR-D-mesarthrocarpus_Contig1008:6711..7144 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig1008 6712..7144 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1008.3.1
>prot_D-mesarthrocarpus_Contig1008.3.1 ID=prot_D-mesarthrocarpus_Contig1008.3.1|Name=mRNA_D-mesarthrocarpus_Contig1008.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MFKHTSEAERMMRLASALAGQMRSQVSRVQAILSDAWQLHLSETAAGRSS back to top mRNA from alignment at D-mesarthrocarpus_Contig1008:5776..7144-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1008.3.1 ID=mRNA_D-mesarthrocarpus_Contig1008.3.1|Name=mRNA_D-mesarthrocarpus_Contig1008.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1369bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:5776..7144- (Discosporangium mesarthrocarpum MT17_79)AGGGAGAGGAAGATGCTCAGCGTGCTCTCAACTCAGTTTGTCACCTCCTC
GACCGCATGCTCCTGCTGGACCCACAAGAGAAGGCAAGCCCACCTAGGGT
TGCCCTCATGCTTATCTTCCAGACTCTGAAACAACCCCAAACCTCATCCT
AAATTGCGGTGCTCTTGTGTGGATATGCATAGAACTACCCGTGACTAGGG
TCAATCGAGTATGTTGCCGCTCCACTTTTGTCCAAACAGAGGCAGCTGTG
TAGCTGCTTCACTTGATTAGGTTGATACTATCATTGTGCTCCAGGACTAG
GTACATGCTTGTTCCCAGTGTTTCGGAAGGTGTGTCAGTCACAGTGTATG
TGGCCCGCTCGTGACGGCAGGGAGATAGGGGTTGCAACAGCCTCGGTGGC
TTGGAGCAGTTGCCAGGGCTGGTGACGGGACTC ATGTTTAAGCACACATC
GGAGGCAGAGCGGATGATGCGACTTGCCTCTGCTCTTGCCGGTCAGATGA
GATCTCAG GTAGATACCCCACCTTGTTGCCCTTTGCCCTTGTATTTTTGT
TGTTGAGAAAGCCCTTCCTGATAAGAACCTTGAGGCTGCCTGTCCCCTTC
CTATCTTCTCGGGATGTTGGCGCGATCATGTTGTTGCTTCTTTGCCGTGG
AGTCTCTTCTGGAATTTTTGTTGTTCAAGCTGTAGTGTCCATAATAAGTC
TTGCATGTGTGGATAGTGGACCTGACTACCTTCTCTTTTAGAGGATCAAA
TGTGCACCCTCCGAGCAGCTCAATTTTTGATACTCCCGAGTTCTTGATAC
TATATGCTGTACATAAGAGGTGTTCACTTCAATATGAAACCTCCTGCTAC
ACTGTTCACATGCGGACTGAAATATGGGTCAATTGAGGCACCTCTCATGA
CATCTTCATGTAGCCGATTTAAAACAAAATCCCTGTCTTGGTACTGTCTT
AGTGTTACGTGCACAATAGCAGTTTTTTGCGCACAGTAAGTGATTAACTA
AATCTCATTAACTGCCACCGCCACCGTGAGCAGCTCCTCCCTTCACCGTC
CATTCCTCTTCCAACCCTCCTTGTCCTTGGGCTGACCTTCTCAACCCCTT
TTGGAGGAAAGGTTTCCCGTGTGCAAGCCATCCTGTCGGATGCTTGGCAG
TTACACCTCTCTGAAACGGCAGCGGGCCGCTCATCCCCAAGCATGCCTGG
AAGGACGCACCCCCCGCCAACCACACCCTGCTCTAGGACTACCTCTAGTC
TCAGTGGAGTGACTAATATTGGCGGTGGTCCGCATGACCAGGATGTGATG
CTCCCACTCCCCAGCCCCGTAGAAGAGGTGGCTCTTGGGGAAGTCTCCAC
CCCTGGCCATGGAGAAGTC back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1008:5776..7144-
>mRNA_D-mesarthrocarpus_Contig1008.3.1 ID=mRNA_D-mesarthrocarpus_Contig1008.3.1|Name=mRNA_D-mesarthrocarpus_Contig1008.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:5776..7144- (Discosporangium mesarthrocarpum MT17_79) back to top