mRNA_D-mesarthrocarpus_Contig10077.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10077.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10077.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10077.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10077contigD-mesarthrocarpus_Contig10077:2807..4256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSX6
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5
Model size802
Max annot lvl2759|Eukaryota
KEGG koko:K15504
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.9e-07
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_001790.1
Descriptionproteasome regulatory particle assembly
Cds size693
COG categoryL
BRITEko00000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.2344725-UTR-D-mesarthrocarpus_Contig10077:2806..29151680789153.2344725-UTR-D-mesarthrocarpus_Contig10077:2806..2915Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10077 2807..2915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.2489069-CDS-D-mesarthrocarpus_Contig10077:2915..32661680789153.2489069-CDS-D-mesarthrocarpus_Contig10077:2915..3266Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10077 2916..3266 +
1680789153.2615757-CDS-D-mesarthrocarpus_Contig10077:3508..37151680789153.2615757-CDS-D-mesarthrocarpus_Contig10077:3508..3715Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10077 3509..3715 +
1680789153.2718718-CDS-D-mesarthrocarpus_Contig10077:4121..42561680789153.2718718-CDS-D-mesarthrocarpus_Contig10077:4121..4256Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10077 4122..4256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10077.2.1prot_D-mesarthrocarpus_Contig10077.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10077 2916..4256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10077.2.1

>prot_D-mesarthrocarpus_Contig10077.2.1 ID=prot_D-mesarthrocarpus_Contig10077.2.1|Name=mRNA_D-mesarthrocarpus_Contig10077.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=231bp
MVSPSSSPKRMNGPGQDDGPAQNTNEPRSCALLEACCNKNLSIAVNILEG
AVGEANQERDQLLRSEDDMRDTPLHLAASSGDDRIVNLLLTNGAEVNAED
NLGSTPLNRAAVTGHVEVIRLLLEHGADLEHLDDISGAALHAAARRNHSE
SCKILISHGADVNVSDGIGNRPLHLAAAEGAMSALQVLVENGADVSVCND
RGLSPLDMARSSWIGPHAQGKIAELLAGQGT
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mRNA from alignment at D-mesarthrocarpus_Contig10077:2807..4256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10077.2.1 ID=mRNA_D-mesarthrocarpus_Contig10077.2.1|Name=mRNA_D-mesarthrocarpus_Contig10077.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1450bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10077:2807..4256+ (Discosporangium mesarthrocarpum MT17_79)
TCCAGATATGCCTCTAGACCTATCCTATAAGGACATTCAATGGGCACAAC
AACCCTGAGTTTCCCTCCAGAAGTCTTCGTCTGAAACAATTACATTGCCG
AGATTTGAGATGGTGTCTCCGTCCTCGTCCCCCAAGAGAATGAACGGCCC
TGGACAGGACGACGGGCCGGCTCAAAACACAAACGAGCCGAGATCCTGTG
CCCTCCTCGAGGCTTGCTGCAACAAGAATTTGTCAATCGCTGTAAATATC
CTTGAGGGTGCAGTTGGTGAAGCCAACCAGGAACGTGACCAGCTTCTTCG
ATCTGAGGATGACATGCGGGACACTCCGTTGCACTTGGCTGCGAGTAGCG
GGGACGATAGGATCGTAAACCTCCTCCTTACGAACGGGGCCGAAGTCAAC
GCAGAGGACAACTTAGGCAGTACCCCCCTGAACCGTGCGGCAGTCACGGG
ACACGTTGAAGTGAGTGGTTGCTTCAATGCCAACCAAATCTCTCCATATT
TATTGCAGTGGGGTAGGCGTGAAGTGTTCGCAACGGACGAGGTCACTGGT
AGGACGGAGGGTGGGATTAGGTCAAAAGAGCCTGCCTGAAAATCCACTAT
CAATGTTAACTCATTGGATTTGATTGCAAAGTCTTCTGCGTGTGCGCCAC
AGCTCAGATCACATACACACACTCTCTCTCTGATCCGGGATCCATGGCGC
AGGTGATCCGCCTTCTGCTGGAGCACGGAGCTGACTTGGAGCATTTGGAC
GACATATCCGGAGCTGCACTCCATGCAGCCGCGCGCCGTAACCACTCAGA
GAGCTGCAAGATTCTGATTAGCCACGGGGCTGATGTGAACGTATCGGATG
GGATAGGGAATCGACCCCTGCACTTGGCCGCAGCGGAAGGGGCCATGTCT
GCATTGCAGGTAACTCTTGTCCATGTCATCCCTGCTTTGCTTCTCCCAGG
CCCGACCGACACTGGAAGCATGTCCTACTAGGTCACAAGTGGAGTACGTC
TTGGGGTCCTTCGTACTATGAAGCCCTCTTGCATTCGGGGTGTATGTGCT
GCTCGTGCAAGGTCCCGGCACAAAGTCCCTACTTCTTCCGGCTTGCAGTG
GTGCTTTAGCCCAGACTTGTTCCTTCTTCCTACCAAAGTTTTTTTTATAT
CTTTGGTCTGATCTAGGAAGCGTTCTTTGCACGGACTATGATGAACGACG
TACATTGTACCGTTTACAGCTCCCGAAACAACACTGGCAACCCCCCCCCA
ACGCAAGGGTAAAATACCGCCAAAATCATCTTTACATCTCCTTTTTCTGC
TGCGGTGCCTCACAGGTCCTGGTTGAGAATGGGGCTGATGTTAGTGTATG
CAACGACCGGGGCCTCTCCCCTCTTGATATGGCAAGGTCCAGCTGGATAG
GGCCTCATGCCCAGGGTAAAATCGCCGAGCTGCTGGCCGGCCAAGGTACG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10077:2807..4256+

>mRNA_D-mesarthrocarpus_Contig10077.2.1 ID=mRNA_D-mesarthrocarpus_Contig10077.2.1|Name=mRNA_D-mesarthrocarpus_Contig10077.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=693bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10077:2807..4256+ (Discosporangium mesarthrocarpum MT17_79)
ATGGTGTCTCCGTCCTCGTCCCCCAAGAGAATGAACGGCCCTGGACAGGA
CGACGGGCCGGCTCAAAACACAAACGAGCCGAGATCCTGTGCCCTCCTCG
AGGCTTGCTGCAACAAGAATTTGTCAATCGCTGTAAATATCCTTGAGGGT
GCAGTTGGTGAAGCCAACCAGGAACGTGACCAGCTTCTTCGATCTGAGGA
TGACATGCGGGACACTCCGTTGCACTTGGCTGCGAGTAGCGGGGACGATA
GGATCGTAAACCTCCTCCTTACGAACGGGGCCGAAGTCAACGCAGAGGAC
AACTTAGGCAGTACCCCCCTGAACCGTGCGGCAGTCACGGGACACGTTGA
AGTGATCCGCCTTCTGCTGGAGCACGGAGCTGACTTGGAGCATTTGGACG
ACATATCCGGAGCTGCACTCCATGCAGCCGCGCGCCGTAACCACTCAGAG
AGCTGCAAGATTCTGATTAGCCACGGGGCTGATGTGAACGTATCGGATGG
GATAGGGAATCGACCCCTGCACTTGGCCGCAGCGGAAGGGGCCATGTCTG
CATTGCAGGTCCTGGTTGAGAATGGGGCTGATGTTAGTGTATGCAACGAC
CGGGGCCTCTCCCCTCTTGATATGGCAAGGTCCAGCTGGATAGGGCCTCA
TGCCCAGGGTAAAATCGCCGAGCTGCTGGCCGGCCAAGGTACG
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