mRNA_D-mesarthrocarpus_Contig10075.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10075.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10075.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: D8LBJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.230e-27
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 3 
Query:   15 MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVK 278
            MG+T+M VG  FG+ AKG +N + ++ LRR PWEY++  G+G ++G  IP WE  L+SDINEMRADRNMPP  R GG   GSSI + K
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 88
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A7S3Y6B8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6B8_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 2.410e-16
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 3 
Query:    6 VESMGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGL 248
            +E+MG+ S+  GT  G+  K   N +R++ LRREPWEYL+ GG+GM+ G+  P W++ ++  IN + A+R +PP+   G +
Sbjct:   18 IENMGVFSVAFGTALGIGVKAYSNCLRKVALRREPWEYLVLGGLGMYAGSKYPAWQEDMVKKINVLHAERGLPPLDSVGQI 98
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A7S2V622_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.710e-16
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:   45 GFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEV 275
            G+G+A K   N + ++PLRREPWEYL+ G +G ++G  +P W++ L+ +INEM  +R +PP+   G   +GS   ++
Sbjct:   16 GWGVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDGQFSLGSKFKQL 92
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A835ZFJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.700e-15
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 3 
Query:   15 MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIM 254
            MGL   L G   GL  K   N +R++PLRR+PWEY++    G  L   IP WEK L   +N  RA RN+PP+ R+G   M
Sbjct:    1 MGLLYTLGGGAAGLGLKWWTNSVRKVPLRRDPWEYVLYAAAGAALFRQIPIWEKNLTEQVNTKRAARNLPPINREGATTM 80
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A6H5JVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.740e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:  108 PWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVK 278
            PWEY++  GVG ++G  IP WE  L+SDINEMRADRNMPP  R GG   GSSI + K
Sbjct:  591 PWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 647
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: W7U3Y1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3Y1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.050e-9
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3 
Query:   15 MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVKE 281
            M L + LVG  FG+  K A N +R+IPLRREPW+Y I   VG W+G      E+ L   +NE RA  +  PV       +G  +  +KE
Sbjct:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVH------LGGVLTTIKE 83
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A7R9ZF43_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF43_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.740e-9
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3 
Query:   12 SMGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPV 230
            +MGLT+MLVG   G +     N  R++PL R PW ++    VGM+ G      E +LL+DINE+RAD+ +PP+
Sbjct:   27 TMGLTAMLVGGVSGTSMHLLANAARKVPLSRSPWFHVAYFFVGMYAGQKYVTVEAKLLNDINELRADKGLPPM 99
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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: K0R0Q8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Q8_THAOC)

HSP 1 Score: 60.1 bits (144), Expect = 6.920e-7
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:    9 ESMGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPV 230
              MGLT+  VG   G       N I+++PL R PW ++    +G ++G      EK+L+ DINE+RAD+ MPP+
Sbjct:  134 SGMGLTAFFVGAFSGTGMHMMSNAIQKVPLSRRPWMHVGCFFLGGYVGQRWVRLEKELVLDINEIRADKGMPPM 207
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LBJ4_ECTSI1.230e-2755.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y6B8_HETAK2.410e-1640.74Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2V622_9STRA8.710e-1640.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZFJ2_9STRA9.700e-1545.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JVS4_9PHAE3.740e-1361.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U3Y1_9STRA2.050e-940.45Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9ZF43_9STRA2.740e-943.84Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K0R0Q8_THAOC6.920e-739.19Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10075contigD-mesarthrocarpus_Contig10075:1523..3235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog38833.XP_003057224.1
Model size1049
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.51e-08
EggNOG OGs2CV33@1|root,2S4FE@2759|Eukaryota,37W0Y@33090|Viridiplantae
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003750.1
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.1675673-UTR-D-mesarthrocarpus_Contig10075:1522..22841680789153.1675673-UTR-D-mesarthrocarpus_Contig10075:1522..2284Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10075 1523..2284 -
1680789153.2016232-UTR-D-mesarthrocarpus_Contig10075:3221..32351680789153.2016232-UTR-D-mesarthrocarpus_Contig10075:3221..3235Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10075 3222..3235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.1787453-CDS-D-mesarthrocarpus_Contig10075:2284..24661680789153.1787453-CDS-D-mesarthrocarpus_Contig10075:2284..2466Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10075 2285..2466 -
1680789153.1889243-CDS-D-mesarthrocarpus_Contig10075:3130..32211680789153.1889243-CDS-D-mesarthrocarpus_Contig10075:3130..3221Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10075 3131..3221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10075.2.1prot_D-mesarthrocarpus_Contig10075.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10075 2285..3221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10075.2.1

>prot_D-mesarthrocarpus_Contig10075.2.1 ID=prot_D-mesarthrocarpus_Contig10075.2.1|Name=mRNA_D-mesarthrocarpus_Contig10075.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=91bp
MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIP
HWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVKET*
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mRNA from alignment at D-mesarthrocarpus_Contig10075:1523..3235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10075.2.1 ID=mRNA_D-mesarthrocarpus_Contig10075.2.1|Name=mRNA_D-mesarthrocarpus_Contig10075.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1713bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10075:1523..3235- (Discosporangium mesarthrocarpum MT17_79)
GGAAGGTGGAAAGTATGGGTCTCACAAGCATGCTTGTCGGGACTGGGTTT
GGACTCGCCGCCAAGGGAGCCATGAACGAGATCAGGAGGATCCCCCTCCG
TAGAGGTGAGTTGTGAGGATAAATTGTCAGGATGAAAGTGATGGTTGACA
GCTGTCCCTTTGAGCTGAGTCGTATGTTTTCCCCTCCCCAAGTTTGACAC
TTTTTCTCAAAGTTGCCAGGCCAGATTATTCGTGGAGAGGTGGGAAACGT
TTCTATTTGAGATGAATTCGATATCATATTTCTTCCCTTAAGTCCTGACT
CGACAGCCCCTCTCAGGGGGGGGTCAGACTGTCCTTAATTTGTGTCGGTT
TCGGCATCTTCATTTAGTTTGGCACCAATTACCAAATGTGAGTCATGCTT
TTGGAGAAGTCGGGAAAGACACTCGTCGTTAACTCAACAATCCTCAGATA
ATCCATATCGAGATACTCAGGGAGGAGCTTTGCCTATAAGAAAACAGTTG
TCGACGCGTAAAGTGCCTTTATTGCAACCAAATGCCGAGTAAGAACCTCG
AGGTCCGATTCATTTGCTTTTGTAACAGCAGAGAATTTGCTCTTTAGGGT
CAAATCCCTTTGCCTCAATATTGGCCAATCTTCTTCAGAGATGGAGATAG
ATATTCAGCCCAGGAGGAGTACCATTGCTTAGACCAAACTACTGCAGTAA
AGTTGCCCCACACAAATAAAAATGTCCTCATCTTTGCCTGCCTCCTTCTC
TTTCCTCGGTCCATCAAAGAGCCCTGGGAATACCTTATCACAGGAGGAGT
GGGGATGTGGCTTGGGGCAAACATACCCCACTGGGAAAAGCAATTGCTGT
CAGACATCAACGAGATGCGTGCCGACCGCAACATGCCCCCTGTGAAGCGA
CAGGGTGGTTTGATAATGGGCTCAAGCATTGTTGAAGTGAAGGAAACATG
AATTTTCGCAAGGCAATGAGAGAGGGGCTCGAGGGGAGCGGGGGAGGAAG
TGAGAATATCGTCAGGTAGAGTATGATAGGTCACGCCACTGTTTTACCCG
GACATTCAGGTCTCTGTTGGAAGGATAAATATTTTGTGTGTTCCAGTTGA
GGGCTGGCACTGTGTCAAGCAAATTTCTAGCAGGCACAGCTCTTACATGG
GACAGAGATTTCCCTGTTTCTCCTTGCGCATCTACAGCTCCTTATGAGGG
TTTTTAGGTATATTGAGGCGGTCTGCCTGTTGCAACCGTCTTGGAGTCTT
GTAGAATTGCTTGCCACGTCTTGCTCTCTGAAACTAACTTGAGAGATCAA
GTACACAAGTACAAAAGTGTGAGAATAAGATTGGAATTTCAGCTTGCTGT
CACATTTTGTTGTGCCAACGAGTCTTACAATTGTGACCCACGTGACTTGA
AACCTAAAAATCCAACGGTGCAGATGGCATCCCATACTGCCACCTTAATG
ACTGCCGAAAGCATGGAATATCCTACAGAAGTACTATTTTGTCTTGCCTT
TTGCGTAACAGAATGACTGCACACAGAAATGGAGTTTCTTGGGAACGATC
TGTAGTAACCAAGAAATGAGCTCTGGTAAGGAAGTTTCTTGTCCAGAACG
CAAGCACAGCTGCTCAGCTGCTGGCTAGGCTGCACCCTGCTCTGTGTTCA
TGTGGCCAGGGAGGATTTTGATTTGTTTATTTATTTTTGAGTGAATCAAG
TCATACGAACATA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10075:1523..3235-

>mRNA_D-mesarthrocarpus_Contig10075.2.1 ID=mRNA_D-mesarthrocarpus_Contig10075.2.1|Name=mRNA_D-mesarthrocarpus_Contig10075.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=273bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10075:1523..3235- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTCTCACAAGCATGCTTGTCGGGACTGGGTTTGGACTCGCCGCCAA
GGGAGCCATGAACGAGATCAGGAGGATCCCCCTCCGTAGAGAGCCCTGGG
AATACCTTATCACAGGAGGAGTGGGGATGTGGCTTGGGGCAAACATACCC
CACTGGGAAAAGCAATTGCTGTCAGACATCAACGAGATGCGTGCCGACCG
CAACATGCCCCCTGTGAAGCGACAGGGTGGTTTGATAATGGGCTCAAGCA
TTGTTGAAGTGAAGGAAACATGA
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