mRNA_D-mesarthrocarpus_Contig10070.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10070.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10070.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A7S0IFV4_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IFV4_MICPS)

HSP 1 Score: 71.6 bits (174), Expect = 6.270e-13
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVL 198
            + +QV + +F HR++DV  T+R   + A+GRWM   P  FL D  ++YLGWSL+DK S+VR+A L
Sbjct:  285 MIRQVFEKIFTHRFRDVDPTIRAACIKALGRWMHDHPLLFLSDYFLKYLGWSLNDKDSSVRLAAL 349          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A8J5KE34_ZINOF (SCD domain-containing protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KE34_ZINOF)

HSP 1 Score: 70.1 bits (170), Expect = 2.180e-12
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192
            + +++  G+F HRY+DV   +R   +S++G W+L+ P  FLQD  ++YLGW+L+DKS  VR A
Sbjct:  279 MMRKLFKGLFMHRYRDVDPEIRMSCISSLGNWILLYPSLFLQDLYLKYLGWTLNDKSPGVRKA 341          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A397JIC3_9GLOM (SCD domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JIC3_9GLOM)

HSP 1 Score: 69.7 bits (169), Expect = 3.000e-12
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 SLTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVLQV 204
            S    + DGVF HRY+DV   +R E +  +G W++  P  FL D  +RYLGW LSDKS  VR+  L+V
Sbjct:  377 SYFDDLFDGVFVHRYRDVEPIIRSECIKELGVWIIRHPDRFLGDTIIRYLGWQLSDKSPIVRLESLKV 444          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A4U5LQV9_STECR (SCD domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LQV9_STECR)

HSP 1 Score: 69.3 bits (168), Expect = 4.080e-12
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVLQVNLP 213
            + Q V   VF HRY+D+   +R  ++  +G W+ + P+AFL+D+ ++Y+GW L DK+S+VRM  L   +P
Sbjct:  341 MIQYVFKSVFVHRYRDIVPEIRSVSIEELGHWIYLFPEAFLEDSYLKYIGWMLYDKNSDVRMKCLGALIP 410          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A811LFD0_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811LFD0_9BILA)

HSP 1 Score: 68.9 bits (167), Expect = 5.560e-12
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVLQVNLP 213
            + Q V   VF HRY+D+ S VR   +S +G+WML+ P+ FL D+ ++Y+GW L DK+S VR   +   +P
Sbjct:  275 MIQYVFKHVFAHRYRDIISDVRCVCISELGKWMLVYPQLFLDDSYLKYVGWLLYDKNSEVRQRCINCLIP 344          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: UPI00053F2D46 (sister-chromatid cohesion protein 3 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F2D46)

HSP 1 Score: 68.9 bits (167), Expect = 5.570e-12
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192
            +  ++  G+F HRY+D+ S +R   + ++G W+L  P  FLQD  ++YLGW+L+DKS+ VR A
Sbjct:  275 MMDKIFKGLFMHRYRDIDSNIRVSCIQSLGVWILSYPSLFLQDRYLKYLGWTLNDKSAGVRKA 337          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A5C7I211_9ROSI (SCD domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I211_9ROSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.580e-12
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVL 198
            + +++  G+F HRY+D+  T+R   + ++G W+L  P  FLQD  ++YLGW+L+DKS+ VR A +
Sbjct:  274 MMRKIFTGLFVHRYRDIDPTIRMSCIKSLGVWILSYPSFFLQDLYLKYLGWTLNDKSAGVRKAAV 338          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A068U4X5_COFCA (SCD domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068U4X5_COFCA)

HSP 1 Score: 68.6 bits (166), Expect = 7.620e-12
Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192
            + +++  G+F HRY+D+   +R   + ++G W+L+ P  FLQD  ++YLGW+L+DKSS VR A
Sbjct:  285 MMRKLFTGLFVHRYRDIDPEIRMSCIQSLGVWILLYPSLFLQDLYLKYLGWTLNDKSSGVRKA 347          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A830CXN2_9LAMI (Sister-chromatid cohesion protein 3 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CXN2_9LAMI)

HSP 1 Score: 68.6 bits (166), Expect = 7.670e-12
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192
            + +++  G+F HRY+D+   +R   + ++G W+L  P  FLQD  ++YLGW+L+DKSS VR A
Sbjct:    4 MMRKIFQGLFVHRYRDIDQDIRMSCIESLGVWVLSYPSLFLQDLYLKYLGWTLNDKSSGVRKA 66          
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: UPI00053C1DBB (sister-chromatid cohesion protein 3 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1DBB)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-11
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVL 198
            + +++  G+F HRY+D+  ++R   + ++G W+L  P  FLQD  ++YLGW+L+DKS+ VR A L
Sbjct:  276 MMRKIFTGLFVHRYRDIDPSIRMSCIQSLGIWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASL 340          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0IFV4_MICPS6.270e-1347.69Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8J5KE34_ZINOF2.180e-1244.44SCD domain-containing protein n=4 Tax=Zingiber off... [more]
A0A397JIC3_9GLOM3.000e-1247.06SCD domain-containing protein n=1 Tax=Diversispora... [more]
A0A4U5LQV9_STECR4.080e-1240.00SCD domain-containing protein n=1 Tax=Steinernema ... [more]
A0A811LFD0_9BILA5.560e-1242.86Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
UPI00053F2D465.570e-1242.86sister-chromatid cohesion protein 3 n=1 Tax=Beta v... [more]
A0A5C7I211_9ROSI5.580e-1241.54SCD domain-containing protein n=1 Tax=Acer yangbie... [more]
A0A068U4X5_COFCA7.620e-1242.86SCD domain-containing protein n=4 Tax=Coffea TaxID... [more]
A0A830CXN2_9LAMI7.670e-1242.86Sister-chromatid cohesion protein 3 n=1 Tax=Phthei... [more]
UPI00053C1DBB1.040e-1141.54sister-chromatid cohesion protein 3 n=1 Tax=Tarena... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10070contigD-mesarthrocarpus_Contig10070:3687..4363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI41968
PFAMsSTAG
Model size213
Max annot lvl4776|Peronosporales
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.72e-13
EggNOG OGsCOG5537@1|root,KOG2011@2759|Eukaryota,3Q897@4776|Peronosporales
DescriptionSTAG domain
Cds size213
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.0619938-CDS-D-mesarthrocarpus_Contig10070:3686..38151680789153.0619938-CDS-D-mesarthrocarpus_Contig10070:3686..3815Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10070 3687..3815 +
1680789153.0761838-CDS-D-mesarthrocarpus_Contig10070:4279..43631680789153.0761838-CDS-D-mesarthrocarpus_Contig10070:4279..4363Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10070 4280..4363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10070.1.1prot_D-mesarthrocarpus_Contig10070.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10070 3687..4363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10070.1.1

>prot_D-mesarthrocarpus_Contig10070.1.1 ID=prot_D-mesarthrocarpus_Contig10070.1.1|Name=mRNA_D-mesarthrocarpus_Contig10070.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=71bp
SLTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYL
GWSLSDKSSNVRMAVLQVNLP
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mRNA from alignment at D-mesarthrocarpus_Contig10070:3687..4363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10070.1.1 ID=mRNA_D-mesarthrocarpus_Contig10070.1.1|Name=mRNA_D-mesarthrocarpus_Contig10070.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=677bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10070:3687..4363+ (Discosporangium mesarthrocarpum MT17_79)
TCCTTAACCCAGCAGGTGCTAGATGGGGTGTTCAAGCACCGGTACAAGGA CGTCAGCAGCACAGTTAGGGAGGAGGCACTCTCTGCCATGGGGCGGTGGA TGTTGATCCTGCCAAAGGCCTTCCTGCAGGTGCTCTTTTTTTTTTACCCC TCAAGTGCTGGGGTTAGGTTAGGGTTGGGATTAGGACTACGGTAAAGGTG TCGCAGGGTTCATTTGCCACTAGATTGAAGACAGGTATAATACCTCCTGC TCCTTTGCCTATCCTTATCCTTGCCCCAACCTGAACCCTAACCCTAACTT GAGCACGTGATCAGTTTTCGGGTGTCTGCTTGGGTTAGGCTTAGTCCTAG GCTGTATGCCTGCTGTATGGTAAAGCTATCCTTTGTAACGAAACTCAATG TAAACATATCCTCTACCTTACCACTATGCTCTACGCTTATTGTTGAGCTG TGGATAGACCCTCTACTCCACCACTATGCTATATATCATTGAAGTGTAGA CAAATTCCCTAACCCTAAGCTTCCTTCAAACAATCGTCTGCCTCATCTAC CTTGTCAGTAACATCCCATCTTTATCTCCATCTCCATGTGTAGGATGCAA CTGTTAGATACCTCGGGTGGAGCCTCAGTGACAAGTCCAGCAATGTCAGG ATGGCCGTCTTGCAGGTGAACCTCCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10070:3687..4363+

>mRNA_D-mesarthrocarpus_Contig10070.1.1 ID=mRNA_D-mesarthrocarpus_Contig10070.1.1|Name=mRNA_D-mesarthrocarpus_Contig10070.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10070:3687..4363+ (Discosporangium mesarthrocarpum MT17_79)
TCCTTAACCCAGCAGGTGCTAGATGGGGTGTTCAAGCACCGGTACAAGGA
CGTCAGCAGCACAGTTAGGGAGGAGGCACTCTCTGCCATGGGGCGGTGGA
TGTTGATCCTGCCAAAGGCCTTCCTGCAGGATGCAACTGTTAGATACCTC
GGGTGGAGCCTCAGTGACAAGTCCAGCAATGTCAGGATGGCCGTCTTGCA
GGTGAACCTCCCC
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