mRNA_D-mesarthrocarpus_Contig10068.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10068.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10068.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: D7FPA2_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPA2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-22
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFKAMV 207
            Y++Y EGPPRLGWIFNMLPT+ PDASG E+SGLDMYFLEQDGGTFKA V
Sbjct:   33 YDRYSEGPPRLGWIFNMLPTSIPDASGNEKSGLDMYFLEQDGGTFKATV 81
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.310e-20
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFKAMV 207
            Y++Y EGPPRLGWIFNMLPT+ PDASG E+SGLDMYFLEQDGGTFKA V
Sbjct:   84 YDRYSEGPPRLGWIFNMLPTSIPDASGNEKSGLDMYFLEQDGGTFKATV 132
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: A0A812Q0Y1_9DINO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q0Y1_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 1.060e-11
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFKAMV 207
            YE + EGPPR+G++ NMLPT+  +   IERS LD+YFL+QDG TFKA +
Sbjct:   58 YETFTEGPPRVGYLTNMLPTSVANEDRIERSALDLYFLQQDGATFKAQL 106
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 9.540e-11
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFK 198
            Y ++ EG PRLGW+ +M  +T PD  G ERSG+D+YFL+QDG TFK
Sbjct:   69 YSRFEEGSPRLGWLLDMNASTVPDEEGRERSGMDLYFLQQDGDTFK 114
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: A0A6H5JC65_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC65_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 8.720e-10
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  109 MLPTTAPDASGIERSGLDMYFLEQDGGTFKAMVGRLEQR 225
            MLPT+ PDASG E+SGLDMYFLEQDGGTFKA V     R
Sbjct:    1 MLPTSIPDASGNEKSGLDMYFLEQDGGTFKATVRTCRDR 39
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: A0A4P9YWH3_9FUNG (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YWH3_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 2.570e-8
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIE-RSGLDMYFLEQDGGTFKAMV 207
            + ++ EGPPRLGW+ NM PT   D      R+G+D YFLE+DG TFKA +
Sbjct:   74 FHRFQEGPPRLGWLINMHPTLVHDKDTPSGRAGVDYYFLEEDGNTFKATI 123
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: UPI0007121309 (DNA polymerase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007121309)

HSP 1 Score: 58.9 bits (141), Expect = 2.600e-8
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFKAMV 207
            YE Y EGP RLGW+ N++ TT       +RSGL+ +F+EQ+G  FKA +
Sbjct:  382 YETYTEGPKRLGWLLNLVNTTVTKEGSPDRSGLECFFIEQNGNLFKATI 430
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: A0A5A8DJC1_CAFRO (DNA polymerase epsilon catalytic subunit n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJC1_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 6.680e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFKAMV 207
            Y+   EG  ++G++ NML +T      IERSG+D+YFL+QDGGTFKA V
Sbjct:   14 YDHLQEGEEQVGYLVNMLASTVAGDDRIERSGIDLYFLKQDGGTFKATV 62
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: A0A1S8W0Z6_9FUNG (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0Z6_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 1.650e-7
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTT-APDASGIERSGLDMYFLEQDGGTFKAMV 207
            + +Y EGP +LGW+ N+ PTT   D     ++GLDMYF+E+DG TFKA +
Sbjct:   94 FARYREGPEKLGWLVNIQPTTIVDDECPTGKAGLDMYFIEEDGTTFKATL 143
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BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Match: D8M3N9_BLAHO (DNA polymerase epsilon catalytic subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M3N9_BLAHO)

HSP 1 Score: 56.2 bits (134), Expect = 2.350e-7
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   61 YEKYIEGPPRLGWIFNMLPTTAPDASGIERSGLDMYFLEQDGGTFKAMV 207
            YE +  GP RLGW+ N++ TT P     ++SGLD +F+EQ+G  FK+ +
Sbjct:  210 YETFSSGPKRLGWLLNLVNTTVPKIGSPDQSGLDCFFIEQNGNLFKSTL 258
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10068.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPA2_ECTSI1.260e-2283.67DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
D8LQC0_ECTSI2.310e-2083.67DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A812Q0Y1_9DINO1.060e-1159.18DNA polymerase epsilon catalytic subunit (Fragment... [more]
W7TVX1_9STRA9.540e-1158.70DNA-directed DNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A6H5JC65_9PHAE8.720e-1074.36DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A4P9YWH3_9FUNG2.570e-852.00DNA polymerase epsilon catalytic subunit (Fragment... [more]
UPI00071213092.600e-848.98DNA polymerase n=1 Tax=Blastocystis sp. subtype 4 ... [more]
A0A5A8DJC1_CAFRO6.680e-853.06DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A1S8W0Z6_9FUNG1.650e-750.00DNA polymerase epsilon catalytic subunit (Fragment... [more]
D8M3N9_BLAHO2.350e-744.90DNA polymerase epsilon catalytic subunit n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10068contigD-mesarthrocarpus_Contig10068:4178..4414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPA2
Preferred namePOLE1
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Model size237
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue1.98e-23
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota
EC2.7.7.7
DescriptionDNA replication proofreading
Cds size234
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.8138497-UTR-D-mesarthrocarpus_Contig10068:4177..41801680789152.8138497-UTR-D-mesarthrocarpus_Contig10068:4177..4180Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10068 4178..4180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.8266118-CDS-D-mesarthrocarpus_Contig10068:4180..44141680789152.8266118-CDS-D-mesarthrocarpus_Contig10068:4180..4414Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10068 4181..4414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10068.1.1prot_D-mesarthrocarpus_Contig10068.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10068 4181..4414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10068.1.1

>prot_D-mesarthrocarpus_Contig10068.1.1 ID=prot_D-mesarthrocarpus_Contig10068.1.1|Name=mRNA_D-mesarthrocarpus_Contig10068.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=78bp
MLALPLPLPLTLPLPLPSSYEKYIEGPPRLGWIFNMLPTTAPDASGIERS
GLDMYFLEQDGGTFKAMVGRLEQRFLL*
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mRNA from alignment at D-mesarthrocarpus_Contig10068:4178..4414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10068.1.1 ID=mRNA_D-mesarthrocarpus_Contig10068.1.1|Name=mRNA_D-mesarthrocarpus_Contig10068.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=237bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10068:4178..4414+ (Discosporangium mesarthrocarpum MT17_79)
TTAATGCTGGCCCTGCCCCTGCCCCTTCCCCTGACCCTGCCCTTGCCCCT
TCCCTCAAGTTACGAGAAGTACATTGAAGGTCCCCCCCGGCTTGGGTGGA
TCTTCAACATGCTTCCGACCACAGCTCCAGACGCATCAGGCATCGAGAGA
AGCGGCCTGGACATGTACTTCCTCGAGCAAGATGGGGGGACCTTCAAGGC
GATGGTAGGAAGACTAGAGCAGAGATTCTTGTTGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10068:4178..4414+

>mRNA_D-mesarthrocarpus_Contig10068.1.1 ID=mRNA_D-mesarthrocarpus_Contig10068.1.1|Name=mRNA_D-mesarthrocarpus_Contig10068.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=234bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10068:4178..4414+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTGGCCCTGCCCCTGCCCCTTCCCCTGACCCTGCCCTTGCCCCTTCC
CTCAAGTTACGAGAAGTACATTGAAGGTCCCCCCCGGCTTGGGTGGATCT
TCAACATGCTTCCGACCACAGCTCCAGACGCATCAGGCATCGAGAGAAGC
GGCCTGGACATGTACTTCCTCGAGCAAGATGGGGGGACCTTCAAGGCGAT
GGTAGGAAGACTAGAGCAGAGATTCTTGTTGTAG
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