mRNA_D-mesarthrocarpus_Contig10066.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10066.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10066.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: D8LTY7_ECTSI (Malate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.080e-31
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQ  FD+G LPDFLPET H+R+DP+WRVA APADL DRRVEITGPV     INGLNSGASTYMADFEDSS+PTW +MV
Sbjct:   47 RQKEFDAGVLPDFLPETRHVRDDPSWRVAEAPADLMDRRVEITGPVDRKMVINGLNSGASTYMADFEDSSAPTWVNMV 124
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: W3VEN7_PSEA5 (Malate synthase n=2 Tax=Moesziomyces TaxID=63261 RepID=W3VEN7_PSEA5)

HSP 1 Score: 114 bits (285), Expect = 1.970e-27
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQA FD G LPDFLPETAHIRN+PTW+ AP    L+DRRVEITGPV     IN LNSGA TYMADFEDS+SPTW +++
Sbjct:  317 RQARFDGGALPDFLPETAHIRNNPTWQCAPPAPGLRDRRVEITGPVDRKMVINALNSGAYTYMADFEDSTSPTWANLM 394
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A081CDG9_PSEA2 (Malate synthase n=1 Tax=Pseudozyma antarctica TaxID=84753 RepID=A0A081CDG9_PSEA2)

HSP 1 Score: 114 bits (285), Expect = 1.970e-27
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQA FD G LPDFLPETAHIRN+PTW+ AP    L+DRRVEITGPV     IN LNSGA TYMADFEDS+SPTW +++
Sbjct:  323 RQARFDGGALPDFLPETAHIRNNPTWQCAPPAPGLRDRRVEITGPVDRKMVINALNSGAYTYMADFEDSTSPTWANLM 400
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: I1CBW1_RHIO9 (Malate synthase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CBW1_RHIO9)

HSP 1 Score: 112 bits (281), Expect = 4.880e-27
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQ   D G LPDFLPETAH+RNDP WR AP    LQDRRVEITGPV     IN LNSGA T+MADFEDSS+PTW +M+
Sbjct:   61 RQQELDRGVLPDFLPETAHVRNDPNWRAAPPAPGLQDRRVEITGPVDRKMVINALNSGAYTFMADFEDSSAPTWENMI 138
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A0D1DWV6_USTMA (Malate synthase n=16 Tax=Ustilaginales TaxID=5267 RepID=A0A0D1DWV6_USTMA)

HSP 1 Score: 111 bits (277), Expect = 1.580e-26
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQA FD G LPDFLPETAHIRN+ TW+ AP    L+DRRVEITGPV     IN LNSGA TYMADFEDS+SPTW +++
Sbjct:   49 RQARFDGGALPDFLPETAHIRNNATWQCAPPAPGLRDRRVEITGPVDKKMVINALNSGAYTYMADFEDSTSPTWANLM 126
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A7C4J6E2_9CHLR (Malate synthase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4J6E2_9CHLR)

HSP 1 Score: 107 bits (268), Expect = 2.050e-26
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGP-----VINGLNSGASTYMADFEDSSSPTWTSMVR 231
            RQ   D+G LPDFLP+TAHIR+D +WRVAP PADLQ R VEITGP     +IN LNSGA  +MADFED++SPTW +MV+
Sbjct:   53 RQLRIDAGELPDFLPDTAHIRSDRSWRVAPIPADLQRRHVEITGPTDKKMLINALNSGADVFMADFEDANSPTWDNMVQ 131
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A8H7BL60_9FUNG (Malate synthase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BL60_9FUNG)

HSP 1 Score: 110 bits (276), Expect = 2.410e-26
Identity = 58/79 (73.42%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVA-PAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQ   D G LPDFLPETA+IRNDP WR A PAP  LQDRRVEITGPV     IN LNSGAST+MADFEDSSSPTW +M+
Sbjct:   61 RQQELDRGVLPDFLPETAYIRNDPNWRAAVPAPG-LQDRRVEITGPVDRKMVINALNSGASTFMADFEDSSSPTWDNMI 138
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A367JLJ1_RHIAZ (Malate synthase n=4 Tax=Rhizopus TaxID=4842 RepID=A0A367JLJ1_RHIAZ)

HSP 1 Score: 110 bits (276), Expect = 2.410e-26
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQ   D G LPDFLPETA+IRNDP WR AP    LQDRRVEITGPV     IN LNSGA T+MADFEDSS+PTW +M+
Sbjct:   61 RQQELDRGVLPDFLPETAYIRNDPNWRAAPPAPGLQDRRVEITGPVDRKMIINALNSGAYTFMADFEDSSAPTWENMI 138
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A8H8QPZ2_9BASI (Malate synthase n=1 Tax=Ustilago bromivora TaxID=307758 RepID=A0A8H8QPZ2_9BASI)

HSP 1 Score: 111 bits (277), Expect = 2.460e-26
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQA FD G LPDFLPETAHIRN+ TW+ AP    L+DRRVEITGPV     IN LNSGA TYMADFEDS+SPTW +++
Sbjct:   49 RQARFDGGALPDFLPETAHIRNNATWQCAPPAPGLRDRRVEITGPVDKKMVINALNSGAYTYMADFEDSTSPTWANLM 126
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BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Match: A0A836CKH8_9STRA (Malate synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.970e-26
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   10 RQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPV-----INGLNSGASTYMADFEDSSSPTWTSMV 228
            RQ  FD+G  P F  ET +IR+DP W V P P DL+DRRVEITGPV     INGLNSGASTYMADFEDS+SPTW +++
Sbjct:   55 RQCEFDAGIDPCFRAETKYIRDDPAWSVRPPPKDLEDRRVEITGPVDRKMVINGLNSGASTYMADFEDSTSPTWDNVL 132
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTY7_ECTSI1.080e-3176.92Malate synthase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
W3VEN7_PSEA51.970e-2770.51Malate synthase n=2 Tax=Moesziomyces TaxID=63261 R... [more]
A0A081CDG9_PSEA21.970e-2770.51Malate synthase n=1 Tax=Pseudozyma antarctica TaxI... [more]
I1CBW1_RHIO94.880e-2769.23Malate synthase n=1 Tax=Rhizopus delemar (strain R... [more]
A0A0D1DWV6_USTMA1.580e-2669.23Malate synthase n=16 Tax=Ustilaginales TaxID=5267 ... [more]
A0A7C4J6E2_9CHLR2.050e-2665.82Malate synthase (Fragment) n=1 Tax=Chloroflexi bac... [more]
A0A8H7BL60_9FUNG2.410e-2673.42Malate synthase n=1 Tax=Apophysomyces ossiformis T... [more]
A0A367JLJ1_RHIAZ2.410e-2669.23Malate synthase n=4 Tax=Rhizopus TaxID=4842 RepID=... [more]
A0A8H8QPZ2_9BASI2.460e-2669.23Malate synthase n=1 Tax=Ustilago bromivora TaxID=3... [more]
A0A836CKH8_9STRA3.970e-2665.38Malate synthase (Fragment) n=1 Tax=Tribonema minus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10066contigD-mesarthrocarpus_Contig10066:219..2015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTY7
Preferred nameMLS1
PFAMsMalate_synthase
Model size300
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00308,RC00311,RC00313,RC02747
KEGG koko:K01637,ko:K01638
KEGG ReactionR00472,R00479
KEGG Pathwayko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200
KEGG ModuleM00012
Hectar predicted targeting categoryother localisation
GOsGO:0000255,GO:0000256,GO:0003674,GO:0003824,GO:0004451,GO:0004474,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0005975,GO:0006081,GO:0006082,GO:0006083,GO:0006097,GO:0006629,GO:0006631,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009062,GO:0009514,GO:0009987,GO:0010259,GO:0015976,GO:0016042,GO:0016054,GO:0016740,GO:0016746,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019752,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0034641,GO:0042579,GO:0042737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043605,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044262,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045733,GO:0046395,GO:0046483,GO:0046487,GO:0046700,GO:0046912,GO:0048856,GO:0070013,GO:0071704,GO:0072329,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Exons3
Evalue1.77e-32
EggNOG OGsCOG2225@1|root,KOG1261@2759|Eukaryota
EC2.3.3.9,4.1.3.1
Descriptionmalate synthase activity
Cds size300
COG categoryC
BiGG ReactioniMM904.YIR031C,iND750.YIR031C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.69191-CDS-D-mesarthrocarpus_Contig10066:218..3741680789152.69191-CDS-D-mesarthrocarpus_Contig10066:218..374Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10066 219..374 -
1680789152.7169688-CDS-D-mesarthrocarpus_Contig10066:959..10131680789152.7169688-CDS-D-mesarthrocarpus_Contig10066:959..1013Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10066 960..1013 -
1680789152.7288022-CDS-D-mesarthrocarpus_Contig10066:1925..20151680789152.7288022-CDS-D-mesarthrocarpus_Contig10066:1925..2015Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10066 1926..2015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10066.1.1prot_D-mesarthrocarpus_Contig10066.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10066 219..2015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10066.1.1

>prot_D-mesarthrocarpus_Contig10066.1.1 ID=prot_D-mesarthrocarpus_Contig10066.1.1|Name=mRNA_D-mesarthrocarpus_Contig10066.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=100bp
MTNRQAVFDSGCLPDFLPETAHIRNDPTWRVAPAPADLQDRRVEITGPVI
NGLNSGASTYMADFEDSSSPTWTSMVRETIARERDPSPQALGRPFNQEP*
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mRNA from alignment at D-mesarthrocarpus_Contig10066:219..2015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10066.1.1 ID=mRNA_D-mesarthrocarpus_Contig10066.1.1|Name=mRNA_D-mesarthrocarpus_Contig10066.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1797bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10066:219..2015- (Discosporangium mesarthrocarpum MT17_79)
ATGACTAACAGGCAGGCAGTTTTTGACTCAGGATGCCTCCCGGACTTCCT
CCCGGAGACGGCCCACATCCGCAACGACCCCACGTGGCGGGTGAGGACCA
GCACTAGTGCAGATGCAGTAGAAACATGAGATCAGTTTGTGGGAAGCCAC
CGACCACCCTACTTGTTCCCCTTCTTCTGCAGTTGACAGTACAGAGCAAG
AGCTCAACATAGCTCCCACGTCACACGTCACCCGATTCTTCTACGGTACC
TGACTGACCCTCTCAGACAGGCGCGAATTATGCACCCAGAAGGTACCCAC
TCAATGACAACTTATTTTCTATCTTTTTTATGTTCGTGTTTATGTTTTTT
TGTTTTGTATTTGTGTTTGTGAGGTACGTTGCTTTGCTGTGCCTTAGGGT
TGAGGCTCTGCAGAACCATGTTCTTGGCAGCAGTCGTCTGGTGTTAACGC
TGTACTCCTACCAACCTGGCAAGCCATGGAGGTAGAGGAGATAGAGGAGG
TAAAGGTCAAACTGTGGCATTGATCCATGGCAAGAACCGGGGGGAGGGAG
TGTTTGCCCACGCCTGATCGAGGTGAATCTGTAGGGTCAGGGATTTGGTT
ACTTGTTGAAGGTTAGGGTTAGGCTTAGGCTGCGGCTAGGATCAGGGCCG
TCAATACTTGGTTCATCTATGGTTATCTCTTTGACATATTTTGACTCTGT
GCATGACTGTACTCAAAAGACAATGAATTCTGTATTTAGGTTTTTTTTTC
AGGGTTGTTTGCATAGGGTTAGGGTTGTGTCACCACTTTCACGTGATATA
GGGTGTGGATTACGGCACCATAATCACCCTTGCATACTGACTCCCTAATG
TGTACCCTGCCTGCTCTGTGAACATGTTCTCGTATTCCAAACTAACCCTT
AACCTGACCCTAACCCTGACCTTGCTCTGTGTACATGTTCTCGTATTCCA
CCTTAACCCTAACCCTGACCCTGACCCTGACCCTGACCCTGACCCTCAAC
AGGTGGCACCTGCCCCTGCAGACCTCCAGGATAGGCGAGTGGAAATCACA
GGACCGGTGGACCGCAAAATGGCAAGAAGAAGAATATGCCCATTGATATA
CTTCAAGTAATAAGTAGAGTGCCCGTTGACATGCTTAAGTAATATGTAGA
GTGCCCGTTGACATACTTCAAGTAATAAGTAGAGTGCCCGTTGACATACT
TCGAGTGCCCGCTGACATACTTCAAGTAATATGTAGAGTGCTTCGTGGCA
GTCCTCACGTACACTCTCATTACAGTCACACCATTGTGGACATGTCACAG
TTATACGGTCGCCTTTTTTTTGTGTCATTGCAGCTACGTCTTTGCGTTTA
CTCTACTGCATGAAGCCTCAATCCCATGGCAGGGAGAGGGGAGAGAGGGG
GGAGAGGTCGGTTGCGACACTTTGGAACGGGGAAGGAGCTGGGGCAGAGA
GAGAGGTGGCCTGGGCCCATAGGGCATGAGGCGGGGGTAGACAGAAAGAA
GTGAAGGCGCACATGACCATGGTCAACGTACGTTGTCCTCTTCATTAATG
CTCCAGAGCAGGCAATGGGCGGAGGAGCCCTGACCCTGAGCCTGTCCCTG
ACCCTGGCCCTGACCCTGACCCTGACTCCTTATACCACCAGGTGATCAAC
GGTCTCAACAGCGGCGCCAGCACATACATGGCCGACTTCGAGGACTCCTC
CTCCCCCACATGGACCAGCATGGTGCGTGAGACAATTGCAAGAGAAAGGG
ACCCTAGCCCTCAAGCTTTGGGTCGACCCTTCAATCAAGAACCTTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10066:219..2015-

>mRNA_D-mesarthrocarpus_Contig10066.1.1 ID=mRNA_D-mesarthrocarpus_Contig10066.1.1|Name=mRNA_D-mesarthrocarpus_Contig10066.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=300bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10066:219..2015- (Discosporangium mesarthrocarpum MT17_79)
ATGACTAACAGGCAGGCAGTTTTTGACTCAGGATGCCTCCCGGACTTCCT
CCCGGAGACGGCCCACATCCGCAACGACCCCACGTGGCGGGTGGCACCTG
CCCCTGCAGACCTCCAGGATAGGCGAGTGGAAATCACAGGACCGGTGATC
AACGGTCTCAACAGCGGCGCCAGCACATACATGGCCGACTTCGAGGACTC
CTCCTCCCCCACATGGACCAGCATGGTGCGTGAGACAATTGCAAGAGAAA
GGGACCCTAGCCCTCAAGCTTTGGGTCGACCCTTCAATCAAGAACCTTGA
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