mRNA_D-mesarthrocarpus_Contig1006.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1006.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1006.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.450e-9
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   22 TRYMSLAAVAWPRM-MCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVREGGHGGNP-----GCSKRW--QSLDQPVNSPD 384
            T+ M L AVA PR    +   +DGKV     ++  LAK  +K+R++GTPVT P+TV    +++ +V+++IP+I A  P   G  I+++Q  AK HV       +P     G  + W  Q + QP  SPD
Sbjct:  206 TKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVD----DPEVLAAGRKEGWNIQLMAQPAQSPD 330          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: W4GGI5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGI5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.570e-9
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   22 TRYMSLAAVAWPRM-MCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHV 306
            T+ M L AVA PR      V +DGK+    I++  +A   +K+R++GTPVT P+TV    +++ +V+++IP+I A  P   G  I+++Q+ A+ HV
Sbjct:  139 TKVMFLCAVARPRFDFGRRVMWDGKIGLWPIVETKVAARRSKNRDRGTPVTVPMTVTKPIYRRLLVDKVIPAIQAKWPGQRGGTIYLQQNNARPHV 234          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.140e-9
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   25 RYMSLAAVAWPRM--MCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVREGGHGGN-PGCSKRW--QSLDQPVNSPD 384
            + M L AVA PR       +W DGK+     + ++ A+  +K+RE+GTPVT PVTV  + +++ ++E +IP+I  + P    H I+++Q  A+ HV          G S  W  Q + QP  SPD
Sbjct:  207 KVMFLTAVARPRYDYTQRRMW-DGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWPGRRSHPIYIQQDNARPHVEVDDAAVTLAGHSDGWSIQLVAQPAMSPD 330          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A485LM91_9STRA (Aste57867_22590 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LM91_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.130e-8
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   25 RYMSLAAVAWPRM--MCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVR-EGGHGGNPGCSKRW--QSLDQPVNSPD 384
            + M L AVA PR       +W DGK+     + ++ A+  +K+R++G PVT PVTV    +++ +++ +IP+IM + P    + I+++Q  A+ HV  +       GC   W  Q + QP  SPD
Sbjct:   89 KVMFLTAVARPRYDYKSRTMW-DGKIGMWPFVSVVPAQRKSKNRDRGMPVTTPVTVTKPVYREYLLKHVIPAIMKVWPGRRSNPIYIQQDNARPHVEVDDADVKMAGCLDGWSIQLVAQPAMSPD 212          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A6G0WL62_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WL62_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.610e-8
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   31 MSLAAVAWPRM--MCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVREGGHGG-NPGCSKRW--QSLDQPVNSPD 384
            M L AVA PR       +W +GK+     + ++ A+  +K+RE+GTPVT P+TV  + +++ ++E +IP+I  + P      I+++Q  A+ H    G      G S+ W  Q   QP  SPD
Sbjct:    2 MFLTAVARPRYDYTLRKLW-NGKIGMWPFVSVVPAQRKSKNRERGTPVTTPITVTKKVYRQYLLEHVIPTIKKVWPGRRSQAIYIQQDNARPHDEVDGPAVLMAGSSEGWTIQLASQPAMSPD 123          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A024TSN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSN5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.890e-7
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   22 TRYMSLAAVAWPR----MMCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVRE 312
            T+ M L AVA PR       + +W DGKV     ++  LAK   K+R++GTPVT P++V    ++ ++++++  +I A  P   G  IF +Q  AK HV E
Sbjct:  171 TKVMFLCAVARPRPRHDSKRHAMW-DGKVGLWPFVETKLAKRKYKNRDRGTPVTVPISVTKPIYRYNLIDKVFSAIQAKWPDRRGRPIFAQQDNAKPHVAE 270          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A6A4Z1S9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1S9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.560e-7
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query:   25 RYMSLAAVAWPRM-MCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVREGGHGGN-PGCSKRWQS--LDQPVNSPD 384
            + M L AVA PR        +DGK+     + ++ A+  +K+R++GTPVT PVTV    ++  ++  +IP I A+ P      I+++Q  A+ HV          GC+  W    + QP  SPD
Sbjct:  207 KVMFLTAVARPRFDYTTRTMWDGKIGMWPFVSVVPARRKSKNRDRGTPVTTPVTVTKPVYRDYLLTHVIPRIKAVWPGRRSDPIYIQQDNARPHVEVDDPAVTMAGCADGWSIHLVAQPPMSPD 330          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A024USS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USS9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.140e-6
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   22 TRYMSLAAVAWPR--MMCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHV 306
            T+ M L AVA PR     + +W DGK      ++  LAK  +K+R++GTPVT P++V    +   +++++ P+I +  P   G  IF++Q   K H+
Sbjct:  134 TKVMFLCAVARPRHDSQRHAMW-DGKAGLWPFVETKLAKRKSKNRDRGTPVTVPMSVTKPIYSNYLIDKVFPAIQSKWPDRRGRPIFVQQDNTKPHL 229          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A024T7J2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7J2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.060e-6
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   58 RMMCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHV 306
            R+    +W DGK+ T   ++   AK  +K+RE+GTPVT PVTV    +++ ++E + P+I A  P      I+++Q  A+ HV
Sbjct:   98 RLWTAHLW-DGKLGTWAFVETQSAKRTSKNRERGTPVTTPVTVTKPLYRRYLLEHVFPAIRAQWPGPRSKPIYVQQDNARPHV 179          
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Match: A0A6A4Z4C8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z4C8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.220e-5
Identity = 26/75 (34.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   82 FDGKVSTRTIMDILLAKWDTKHREKGTPVTKPVTVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHV 306
            +DGKV     ++++ AK  +K+R++GTP+T P+TV    +++ +V+++IP+  A  P      +F++Q  AK HV
Sbjct:    2 WDGKVGLWPFVEVVPAKRRSKNRDRGTPITTPMTVTKPVYRQYLVDKVIPATQAQWPSNRRGPVFIQQDNAKPHV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1006.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6A5AA16_9STRA1.450e-936.43Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4GGI5_9STRA8.570e-937.50Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A485KDC6_9STRA9.140e-935.20Aste57867_3131 protein n=1 Tax=Aphanomyces stellat... [more]
A0A485LM91_9STRA5.130e-832.80Aste57867_22590 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WL62_9STRA6.610e-833.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TSN5_9STRA1.890e-736.63Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A4Z1S9_9STRA3.560e-732.26Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024USS9_9STRA3.140e-634.02Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024T7J2_9STRA9.060e-636.14Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A4Z4C8_9STRA2.220e-534.67Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1006contigD-mesarthrocarpus_Contig1006:22187..22676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010684026.1
PFAMsHTH_Tnp_Tc3_2
Model size490
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.55e-07
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.3354888-UTR-D-mesarthrocarpus_Contig1006:22186..222291680789152.3354888-UTR-D-mesarthrocarpus_Contig1006:22186..22229Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1006 22187..22229 -
1680789152.3608446-UTR-D-mesarthrocarpus_Contig1006:22646..226761680789152.3608446-UTR-D-mesarthrocarpus_Contig1006:22646..22676Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1006 22647..22676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.3510015-CDS-D-mesarthrocarpus_Contig1006:22229..226461680789152.3510015-CDS-D-mesarthrocarpus_Contig1006:22229..22646Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1006 22230..22646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1006.6.1prot_D-mesarthrocarpus_Contig1006.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1006 22230..22646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1006.6.1

>prot_D-mesarthrocarpus_Contig1006.6.1 ID=prot_D-mesarthrocarpus_Contig1006.6.1|Name=mRNA_D-mesarthrocarpus_Contig1006.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=139bp
MSLAAVAWPRMMCNGVWFDGKVSTRTIMDILLAKWDTKHREKGTPVTKPV
TVNGERHKKDMVEEIIPSIMAIAPRLPGHLIFMKQHGAKLHVREGGHGGN
PGCSKRWQSLDQPVNSPDPMPMILASSTPSNGLRRAWD*
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mRNA from alignment at D-mesarthrocarpus_Contig1006:22187..22676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1006.6.1 ID=mRNA_D-mesarthrocarpus_Contig1006.6.1|Name=mRNA_D-mesarthrocarpus_Contig1006.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=490bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1006:22187..22676- (Discosporangium mesarthrocarpum MT17_79)
AGAGTGCGGAGCAAATGATTCACCAGGTACATGTCTCTTGCTGCTGTGGC ATGGCCTAGGATGATGTGCAACGGGGTGTGGTTTGACGGTAAGGTCAGCA CTCGGACTATCATGGATATCTTGCTGGCAAAGTGGGACACCAAGCACCGC GAGAAGGGAACTCCAGTCACGAAACCAGTCACAGTCAACGGGGAAAGGCA CAAGAAGGACATGGTTGAGGAGATCATCCCCTCAATCATGGCAATAGCGC CAAGACTGCCAGGCCACCTGATCTTCATGAAGCAGCATGGTGCAAAGCTG CACGTAAGGGAAGGGGGTCATGGAGGCAATCCAGGATGCAGCAAGAGATG GCAATCACTGGACCAGCCTGTAAACTCACCTGACCCAATGCCAATGATCT TGGCTTCTTCCACTCCATCCAACGGCTTAAGGAGGGCGTGGGATTGACCA ACCGAGGCCACCATGGAGGCCTTCAGTGTCTACACCCCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1006:22187..22676-

>mRNA_D-mesarthrocarpus_Contig1006.6.1 ID=mRNA_D-mesarthrocarpus_Contig1006.6.1|Name=mRNA_D-mesarthrocarpus_Contig1006.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=417bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1006:22187..22676- (Discosporangium mesarthrocarpum MT17_79)
ATGTCTCTTGCTGCTGTGGCATGGCCTAGGATGATGTGCAACGGGGTGTG
GTTTGACGGTAAGGTCAGCACTCGGACTATCATGGATATCTTGCTGGCAA
AGTGGGACACCAAGCACCGCGAGAAGGGAACTCCAGTCACGAAACCAGTC
ACAGTCAACGGGGAAAGGCACAAGAAGGACATGGTTGAGGAGATCATCCC
CTCAATCATGGCAATAGCGCCAAGACTGCCAGGCCACCTGATCTTCATGA
AGCAGCATGGTGCAAAGCTGCACGTAAGGGAAGGGGGTCATGGAGGCAAT
CCAGGATGCAGCAAGAGATGGCAATCACTGGACCAGCCTGTAAACTCACC
TGACCCAATGCCAATGATCTTGGCTTCTTCCACTCCATCCAACGGCTTAA
GGAGGGCGTGGGATTGA
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