mRNA_D-mesarthrocarpus_Contig10057.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10057.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10057.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: D7FZ37_ECTSI (Solute:Sodium symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ37_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 2.640e-46
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   10 GGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVG 339
            GGD  SD  LL IVR S+IPVTL+A IVAS YN+TGYLL+VAFDIVLAGCIAPLFAAIY K  VTPGGALA +LFGSILR +LEFALPKDGLL IP+G+++F++G G+VG
Sbjct:  250 GGDRFSDVKLLTIVRVSIIPVTLIACIVASTYNETGYLLIVAFDIVLAGCIAPLFAAIYFKKSVTPGGALAAVLFGSILRAILEFALPKDGLLAIPHGEFNFDYGPGEVG 359          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A6H5KJW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW0_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 5.830e-45
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
Query:   10 GGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVG 339
            GGD  SD  LL IVR S+IPVTL+A IVAS YN+TGYLL+VAFDIVLAGCIAPLFAAIY K  VTPGGALA +LFGSILR +LEFALPKDGLL IP+G+++F++G G+VG
Sbjct:  449 GGDRFSDIKLLTIVRVSIIPVTLIACIVASTYNETGYLLIVAFDIVLAGCIAPLFAAIYFKKSVTPGGALAAVLFGSILRAILEFALPKDGLLAIPHGEFNFDYGPGEVG 558          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: D8LH33_ECTSI (Solute:Sodium symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH33_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.570e-44
Identity = 77/109 (70.64%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   10 GGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQV 336
            GGD  SD  LL IVR S+IPVTL+A IVAS YN+TGYLL+VAFDIVLAGCIAPLFAAIY K  VTPG A A +LFGSI R +LEFALPKDGLL IP+G+++F++G G++
Sbjct:   96 GGDRFSDVKLLTIVRVSIIPVTLIACIVASTYNETGYLLIVAFDIVLAGCIAPLFAAIYFKKSVTPGDAPAPVLFGSIFRAILEFALPKDGLLAIPHGEFNFHYGPGEM 204          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A835YRZ9_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.700e-32
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   22 LSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351
            +++  LL IVR S+  VT++AAIVA++YN+TGYLLVVAFDI LAG IAPL A +Y  N VTPGG + G+L G + R +LE+ALPKDG L++P G+Y++ +G GQ G P F
Sbjct:  470 ITEPMLLIIVRVSVPIVTIIAAIVAAEYNRTGYLLVVAFDIALAGSIAPLLALVYTPNSVTPGGGVCGLLAGILTRVILEYALPKDGSLILPAGNYAYGYGPGQAGLPLF 579          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A836C8K4_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.890e-30
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 LRGGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351
            LR G  ++   LL +VR  +  VT++AAIVAS +N TGYLLVVAFDI LAG IAPL A+IY    VTPGG + G+L G + R +LE+ LPKDG L++P G Y++ +G GQ G P F
Sbjct:  267 LRPGTVITQDMLLRVVRTCVPMVTIIAAIVASTHNNTGYLLVVAFDIALAGSIAPLLASIYTPKRVTPGGGVCGLLAGILTRVILEYTLPKDGSLMLPAGSYAYGYGPGQAGLPLF 382          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A835Z361_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z361_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.270e-24
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   64 IPVTL-VAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351
            +PV + + A++A+ YN+TGYLLVVAFDI L+  IAPL A ++A N +TP G +  +L G   R +LEFALPKDG  V+PYG Y++ +G GQ G P F
Sbjct:  258 VPVVITIGALIAAAYNETGYLLVVAFDIALSSTIAPLLAIVHAPNRITPSGGVVALLGGMSTRVILEFALPKDGSFVLPYGQYAYGYGEGQAGLPSF 354          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A8J6CCI3_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCI3_DIALT)

HSP 1 Score: 99.0 bits (245), Expect = 9.390e-22
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   22 LSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPY-GDYSFNFGSGQ 333
            +S+K LL + R + +PVT  A +VAS   QTGYLLVVAFDI+LAG I PLFAA Y K+  +P GAL  ++ GS LR +LEFALPKDG L++P+ GD   ++G+  
Sbjct:  492 ISEKNLLWVARVAALPVTAAACLVASFTFQTGYLLVVAFDIMLAGTIVPLFAAFYTKSP-SPLGALCCVIGGSGLRVLLEFALPKDGFLILPWPGDEFLDYGAAS 595          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A383W3V0_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W3V0_TETOB)

HSP 1 Score: 94.4 bits (233), Expect = 3.940e-20
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   25 SDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351
            +D  LL +VR   IP+T +A +VA+     GYLLVVAFD+VLAGC  PL AA+Y  +V TP   +A  + GS LR +LEF LPKDG LV  +G Y+  FG    G P F
Sbjct:  474 TDANLLRVVRIFAIPMTGLACLVAALAYNPGYLLVVAFDVVLAGCFVPLLAAVYWPSV-TPNAGIASCVAGSTLRILLEFLLPKDGSLVA-FGQYALQFGKAVAGLPAF 580          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A7J7Q160_9CHLO (Sodium:solute symporter family-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q160_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 7.330e-20
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   25 SDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351
            +DK LL IVR   +P+T +A +VA      GYLLVVAFD+VLAGC  PL AAIY  ++ TP   +   + GS LR +LEF LPKDG LV  +G Y+ +FG    G P F
Sbjct:  475 TDKNLLLIVRIFTVPMTALACMVAVLAYDPGYLLVVAFDVVLAGCFVPLMAAIYWPSM-TPNAGIISCVCGSTLRILLEFLLPKDGSLVA-FGQYALHFGKAIAGLPTF 581          
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A2K3E5B1_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E5B1_CHLRE)

HSP 1 Score: 93.6 bits (231), Expect = 7.350e-20
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   25 SDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351
            S++ LL + R   +P+TL A  +A+      YLLVVAFDIVLAGC+ PL AA+Y     +P   L   L GSILR +LEF LPKDG LVI  G Y+F +GSG  G P F
Sbjct:  476 SEENLLWVARIFHVPMTLTACFIAAWAYNPAYLLVVAFDIVLAGCLVPLLAAVYYPRG-SPNAGLLSCLGGSILRLILEFTLPKDGSLVIA-GKYAFLYGSGLPGLPSF 582          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ37_ECTSI2.640e-4674.55Solute:Sodium symporter family n=1 Tax=Ectocarpus ... [more]
A0A6H5KJW0_9PHAE5.830e-4574.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH33_ECTSI3.570e-4470.64Solute:Sodium symporter family n=1 Tax=Ectocarpus ... [more]
A0A835YRZ9_9STRA8.700e-3257.27Solute:Sodium symporter family n=1 Tax=Tribonema m... [more]
A0A836C8K4_9STRA2.890e-3054.31Solute:Sodium symporter family n=1 Tax=Tribonema m... [more]
A0A835Z361_9STRA1.270e-2452.58Solute:Sodium symporter family n=1 Tax=Tribonema m... [more]
A0A8J6CCI3_DIALT9.390e-2254.29Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A383W3V0_TETOB3.940e-2050.46Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A7J7Q160_9CHLO7.330e-2050.46Sodium:solute symporter family-domain-containing p... [more]
A0A2K3E5B1_CHLRE7.350e-2051.38Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10057contigD-mesarthrocarpus_Contig10057:356..1453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZ37
PFAMsSSF
Model size351
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.33e-47
EggNOG OGsCOG0591@1|root,2S9Z4@2759|Eukaryota
Ec32 ortholog descriptionSodium/solute symporter
Ec32 orthologEc-17_004350.4
DescriptionSodium:solute symporter family
Cds size351
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.9994128-CDS-D-mesarthrocarpus_Contig10057:355..4731680789151.9994128-CDS-D-mesarthrocarpus_Contig10057:355..473Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10057 356..473 +
1680789152.0105164-CDS-D-mesarthrocarpus_Contig10057:1220..14531680789152.0105164-CDS-D-mesarthrocarpus_Contig10057:1220..1453Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10057 1221..1453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10057.1.1prot_D-mesarthrocarpus_Contig10057.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10057 356..1453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10057.1.1

>prot_D-mesarthrocarpus_Contig10057.1.1 ID=prot_D-mesarthrocarpus_Contig10057.1.1|Name=mRNA_D-mesarthrocarpus_Contig10057.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=117bp
VLRGGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVL
AGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPY
GDYSFNFGSGQVGNPFF
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mRNA from alignment at D-mesarthrocarpus_Contig10057:356..1453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10057.1.1 ID=mRNA_D-mesarthrocarpus_Contig10057.1.1|Name=mRNA_D-mesarthrocarpus_Contig10057.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10057:356..1453+ (Discosporangium mesarthrocarpum MT17_79)
GTTCTGCGTGGGGGCGACTCCCTAAGCGACAAGACCCTTCTGGCTATTGT GCGATTCTCGATGATCCCTGTGACCCTTGTCGCTGCCATCGTTGCCAGCC AGTACAACCAGACTGGATGTGAGTTTTCTAGAGAATCCCCCTCTAGCCTC GAGCCTGTCAACACTGTAACTAATATCAATACCGGCCAGTGTAACTGAAA CTGTTAACACGTGCAGCTTTATCTCCTAGCCCTAACAATGGTAAAAGAAC GAATAAACCCTTCCCCTTACCCTTCCCCTTACCCAAAAAGACTTGCCTGT GATGGTCCTGGACATTTGACGAGCAGAATGCATCACCCCCTTCCCATCCT CATCGTAGTGATTTAACACGATCCCAAACCCTAATCCTGAAGGTGCATCC CCTCTTTGTGGCCATCCCACCCTAACCCCAGGGATACGTTGCCCCCTGCC TCCTCTCCATCACAGTGTATCCCTAACCCCTCTGACCGTGAAGAGTCTTG TGACTACAGTCAACATCCTAGAGCCAAATTTGAATATATTATTGAACTAC CCGTTCTCATCCTCACACACCCTTTTACCTTTTTAGCTAAAAATAATAAT AATAGTACACAAAACAATGCAAGAGGCAAAAAAAGAGACCTCGTGAAGGC TTTTGGAATTGTGGTGGTAGGCTGCATCACCCCCCGTCTGCGGCCACCTG GCCTAACTGTAACTTTGATCCGGATGACCCTAAGTAGAGTATTGAAAGCC CTTACCTACAAGCTTGAGCCAAATTTATCTTTGTTATTTAAACAATACCT TTCCTTTTCCCCTTCGTTGATCCACTTTCTTGCCGAAACCAACAATGCAA CAAATGCAAAATAAGACCTACTTGTAGTGGCCTTTGACATCGTTCTGGCG GGCTGCATCGCCCCCCTGTTTGCGGCCATCTACGCCAAGAATGTGGTCAC ACCCGGTGGAGCCCTCGCCGGCATCCTCTTCGGATCAATCCTTCGGACGG TGCTGGAGTTTGCACTACCTAAGGACGGCCTCCTGGTGATCCCCTATGGG GACTACTCCTTTAACTTCGGGTCTGGGCAGGTTGGTAATCCTTTTTTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10057:356..1453+

>mRNA_D-mesarthrocarpus_Contig10057.1.1 ID=mRNA_D-mesarthrocarpus_Contig10057.1.1|Name=mRNA_D-mesarthrocarpus_Contig10057.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=351bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10057:356..1453+ (Discosporangium mesarthrocarpum MT17_79)
GTTCTGCGTGGGGGCGACTCCCTAAGCGACAAGACCCTTCTGGCTATTGT
GCGATTCTCGATGATCCCTGTGACCCTTGTCGCTGCCATCGTTGCCAGCC
AGTACAACCAGACTGGATACCTACTTGTAGTGGCCTTTGACATCGTTCTG
GCGGGCTGCATCGCCCCCCTGTTTGCGGCCATCTACGCCAAGAATGTGGT
CACACCCGGTGGAGCCCTCGCCGGCATCCTCTTCGGATCAATCCTTCGGA
CGGTGCTGGAGTTTGCACTACCTAAGGACGGCCTCCTGGTGATCCCCTAT
GGGGACTACTCCTTTAACTTCGGGTCTGGGCAGGTTGGTAATCCTTTTTT
T
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