mRNA_D-mesarthrocarpus_Contig10051.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10051.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10051.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10051.1.1 vs. uniprot
Match: D7G2V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-6
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:   92 LMDKKALQQTLLSLMEDDRFIDMLHARYIAQMRRRFS 202
            L+DK+ALQ TL+SLMEDDRF+DMLHARY+A MRRR S
Sbjct:  510 LLDKRALQVTLMSLMEDDRFVDMLHARYLALMRRRAS 546
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2V2_ECTSI1.620e-678.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10051contigD-mesarthrocarpus_Contig10051:3216..4553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2V2
Preferred nameDCP1A
PFAMsDCP1,mRNA_decap_C
Model size1338
Max annot lvl2759|Eukaryota
KEGG koko:K12610,ko:K12611,ko:K12612,ko:K12655
KEGG Pathwayko03018,ko04622,map03018,map04622
KEGG ModuleM00395
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000184,GO:0000288,GO:0000290,GO:0000291,GO:0000578,GO:0000932,GO:0000956,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006979,GO:0007028,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007350,GO:0007351,GO:0007389,GO:0007568,GO:0008047,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0008358,GO:0008595,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009719,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010033,GO:0010259,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010603,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019894,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030234,GO:0031047,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034428,GO:0034518,GO:0034613,GO:0034641,GO:0034655,GO:0035194,GO:0035195,GO:0035282,GO:0035770,GO:0036464,GO:0040012,GO:0040029,GO:0042221,GO:0042802,GO:0043085,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043487,GO:0043488,GO:0043928,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044703,GO:0045451,GO:0045495,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051641,GO:0051704,GO:0051716,GO:0060147,GO:0060148,GO:0060255,GO:0060293,GO:0060810,GO:0060811,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0098552,GO:0098562,GO:0098745,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902115,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1903608,GO:1990521,GO:1990904,GO:2000112,GO:2000637,GO:2001141
Exons1
Evalue7.62e-10
EggNOG OGsKOG2868@1|root,KOG2868@2759|Eukaryota
EC3.4.19.12
DescriptionmRNA-decapping enzyme
Cds size117
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.8425696-UTR-D-mesarthrocarpus_Contig10051:3215..43421680789151.8425696-UTR-D-mesarthrocarpus_Contig10051:3215..4342Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10051 3216..4342 -
1680789151.8662672-UTR-D-mesarthrocarpus_Contig10051:4459..45531680789151.8662672-UTR-D-mesarthrocarpus_Contig10051:4459..4553Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10051 4460..4553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.8571453-CDS-D-mesarthrocarpus_Contig10051:4342..44591680789151.8571453-CDS-D-mesarthrocarpus_Contig10051:4342..4459Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10051 4343..4459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10051.1.1prot_D-mesarthrocarpus_Contig10051.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10051 4343..4459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10051.1.1

>prot_D-mesarthrocarpus_Contig10051.1.1 ID=prot_D-mesarthrocarpus_Contig10051.1.1|Name=mRNA_D-mesarthrocarpus_Contig10051.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=39bp
MDKKALQQTLLSLMEDDRFIDMLHARYIAQMRRRFSTR*
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mRNA from alignment at D-mesarthrocarpus_Contig10051:3216..4553-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10051.1.1 ID=mRNA_D-mesarthrocarpus_Contig10051.1.1|Name=mRNA_D-mesarthrocarpus_Contig10051.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1338bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10051:3216..4553- (Discosporangium mesarthrocarpum MT17_79)
TGGTTGGGAGGGGGTAGGACGGCAGGGCAGGGAGGGGGACAGGAACAGGG
ACAAGGACAATAAGGACAGGGCAGGGGCAGGGGCAAGGAAGCTCATGGAC
AAGAAAGCCCTTCAGCAGACGCTCCTGTCCCTAATGGAGGACGATCGGTT
CATCGACATGCTTCATGCCCGGTACATCGCACAGATGCGGAGGCGTTTCA
GCACCAGGTAGCAAGGGTGGCTGCCCCCCTGAGTGTACCGCCACAGCATC
GGTTCCTCTTGTTTTTTTCTCTGTTCGGCGTGTCGCGCATGTCCCACGCA
TCTGGCGCCTCCTCTACGAGCTCTCTTTCTCTCTCTCTGCAGCTGCTGTG
TGCAACCCTTTTGGAGGGTGTTGGAGTGTTTGGTTGATGCCAAGGAAGGT
GGGAGGTAGGGTTGCCAGCAGGGATTAGGGCTCTTCGGTTTTAGGGTTAG
GTCTGGGCTGGAGGAGGAGCAGGCGGTAGAGATTGTGTCTTGTGTTCCTC
CTCTCTGTGGGTTCATGCTCCAGTGTGCATCATGCCCGCCCTGCACTGAG
GAGCTGGAGCAAGGCACAGAAGCGGCTCAGTGGAAGAAGAGAGGAAAGAA
CTCAAGCGTTGTGTCTCCCCATCTGCAAGGGTCGCCGCAGCGGAAGACAT
TCATTACACATGCACGCCATTTGGCTCTGTTTCCTTTGCCCTTTTTCGTT
TATCTGCTGCCAAGGATGAAGAAATCATAGGCACCATTGCCAGCCGCTGC
AGGTGTTTGTGTGTGTGTGTGTTCTAAATGAAAGGATTAGTTCAAAGGCG
TACCTCTAAGCACCACTGTGTAGAGTTGTGTATACTCGCTCTACAGCGGG
TTGAAGGGTGTGTAGGCTGCTGTGTGGCTTGTCTATTGTCTTGGCGGCTT
GACCTCTTGCCTTTTCATGGGCTCTGGGGTACACTGAGATGTGCGGCACA
GGCATCTCGTCAAGATGTTCCAAGGTTCCACCCCAAGGCAACTTGCTTCC
ACTAGCAACCATTACTGTTAGAGATGTGTTGATTATTATGTATGTACTGT
ACAATTCCTTTGGTAAAAGAGAAGCAGGGGTTTCTATTTATCGCAGCAGG
CTGGTAGATTTGACTTTTCATCGGCAGAACTATCAATGTCCCAGCGGATG
TGATGCGGCTTGTGGCTCTCTCTGTGAAATAGAGCTCGAGGAAACATTCC
AGTGCGTTGCATGGATGGTAACATGTCATGCATGTCACTCACTCTTTCGC
CGTCGATGGGGTACATCATGAGTGAATAGTATGTACATTTCTACAATGCA
CTCTTCGTATTATAGCTCTAATAAATCTCAGTGCCGAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10051:3216..4553-

>mRNA_D-mesarthrocarpus_Contig10051.1.1 ID=mRNA_D-mesarthrocarpus_Contig10051.1.1|Name=mRNA_D-mesarthrocarpus_Contig10051.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=117bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10051:3216..4553- (Discosporangium mesarthrocarpum MT17_79)
ATGGACAAGAAAGCCCTTCAGCAGACGCTCCTGTCCCTAATGGAGGACGA
TCGGTTCATCGACATGCTTCATGCCCGGTACATCGCACAGATGCGGAGGC
GTTTCAGCACCAGGTAG
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