mRNA_D-mesarthrocarpus_Contig10047.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10047.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10047.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10047.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10047contigD-mesarthrocarpus_Contig10047:3154..3673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size520
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.0263674-UTR-D-mesarthrocarpus_Contig10047:3153..33701680789151.0263674-UTR-D-mesarthrocarpus_Contig10047:3153..3370Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10047 3154..3370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.03619-CDS-D-mesarthrocarpus_Contig10047:3370..36731680789151.03619-CDS-D-mesarthrocarpus_Contig10047:3370..3673Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10047 3371..3673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10047.3.1prot_D-mesarthrocarpus_Contig10047.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10047 3371..3673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10047.3.1

>prot_D-mesarthrocarpus_Contig10047.3.1 ID=prot_D-mesarthrocarpus_Contig10047.3.1|Name=mRNA_D-mesarthrocarpus_Contig10047.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=101bp
MSLTHHSNVPQLRKRQRVRVVGKAGGQLMVHLGAWRRTKDATVNRCFCRD
SDKSQRKPQCSWLVVKTLRPPAVGWRHAVLFAEVETVPVLVLCGGVITNL
G
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mRNA from alignment at D-mesarthrocarpus_Contig10047:3154..3673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10047.3.1 ID=mRNA_D-mesarthrocarpus_Contig10047.3.1|Name=mRNA_D-mesarthrocarpus_Contig10047.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=520bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10047:3154..3673+ (Discosporangium mesarthrocarpum MT17_79)
CACATACAAACATCGGCACGCTGCCACTGGTAGTGGGTACTAACTGTGCT
GCAGAGGCACAAAAAAAAAACTGCTCTTGCTTCTTTTCCGTTTCTCTTTC
TTTTTTTTTCTTCGCTTGCTTCCCGGAGAAAGAGATTTTTTTTTGTAAAT
TTGTGTTGTTGCTTGGGGAGCGCACTTTTCTTCTCCGGTAGCCGACGCCT
GCGAAGTAATAGTCCCAATGTCCCTCACTCACCATAGCAATGTGCCGCAG
CTCCGTAAGAGACAGCGGGTTAGGGTTGTGGGTAAGGCTGGTGGTCAACT
CATGGTGCACCTTGGCGCGTGGCGGCGCACCAAGGATGCAACAGTCAACC
GGTGCTTCTGTCGCGACTCCGACAAAAGTCAGCGGAAGCCCCAGTGTTCA
TGGTTGGTGGTGAAAACTTTGCGCCCACCTGCTGTCGGCTGGCGGCATGC
AGTCCTGTTTGCAGAGGTCGAAACTGTCCCGGTGCTTGTCCTGTGCGGGG
GGGTCATCACAAACTTGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10047:3154..3673+

>mRNA_D-mesarthrocarpus_Contig10047.3.1 ID=mRNA_D-mesarthrocarpus_Contig10047.3.1|Name=mRNA_D-mesarthrocarpus_Contig10047.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=303bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10047:3154..3673+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCCCTCACTCACCATAGCAATGTGCCGCAGCTCCGTAAGAGACAGCG
GGTTAGGGTTGTGGGTAAGGCTGGTGGTCAACTCATGGTGCACCTTGGCG
CGTGGCGGCGCACCAAGGATGCAACAGTCAACCGGTGCTTCTGTCGCGAC
TCCGACAAAAGTCAGCGGAAGCCCCAGTGTTCATGGTTGGTGGTGAAAAC
TTTGCGCCCACCTGCTGTCGGCTGGCGGCATGCAGTCCTGTTTGCAGAGG
TCGAAACTGTCCCGGTGCTTGTCCTGTGCGGGGGGGTCATCACAAACTTG
GGG
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