mRNA_D-mesarthrocarpus_Contig10046.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10046.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10046.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10046.3.1 vs. uniprot
Match: A0A6H5KJV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.570e-15
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   19 VSHVCDSLKRVFETHGACPIAPPALRPKPPXXXXXXXATATRPVSLLNSSGAVVTLPGDLTSSFAR 216
            V+ VCD L+RVFETHGA P+APP +RPKPP       + +   V L++  GAVVTLPG+LTS FAR
Sbjct:   96 VALVCDGLRRVFETHGATPVAPPTIRPKPPPSLAPPVSASRGLVRLVDRKGAVVTLPGNLTSPFAR 161
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BLAST of mRNA_D-mesarthrocarpus_Contig10046.3.1 vs. uniprot
Match: D7G2X9_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 5.650e-14
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   19 VSHVCDSLKRVFETHGACPIAPPALRPKPPXXXXXXXATATRPVSLLNSSGAVVTLPGDLTSSFAR 216
            V+ VCD L+RVFETHGA P+APP +RPKPP         +   V L++  GAVVTLPG+LT  FAR
Sbjct:  946 VALVCDGLRRVFETHGATPVAPPTIRPKPPPSLAPPALASRGLVRLVDRKGAVVTLPGNLTVPFAR 1011
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BLAST of mRNA_D-mesarthrocarpus_Contig10046.3.1 vs. uniprot
Match: A0A835YR31_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR31_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-8
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   28 VCDSLKRVFETHGACPIAPPALRPKPPXXXXXXXATATRPVSLLNSSGAVVTLPGDLTSSFAR 216
            VCD L+  FE HGA P+APP L P+PP       +   +P++LL+S G VV L  DLT  FAR
Sbjct: 1003 VCDVLRHAFEAHGAIPLAPPLLSPRPPRGEGGAYSVR-QPMTLLDSRGTVVVLARDLTVPFAR 1064
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BLAST of mRNA_D-mesarthrocarpus_Contig10046.3.1 vs. uniprot
Match: A0A1Z5KBK1_FISSO (Non-specific serine/threonine protein kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBK1_FISSO)

HSP 1 Score: 58.5 bits (140), Expect = 2.810e-8
Identity = 33/72 (45.83%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    1 GMDPSMVSHVCDSLKRVFETHGACPIAPPALRPKPPXXXXXXXATATRPVSLLNSSGAVVTLPGDLTSSFAR 216
            G DP +V  VC+ LK VF  HGA  +  P LRP+          +   P  +LNS GAV++LP DLT SFAR
Sbjct:  937 GSDPFVVETVCEKLKAVFHMHGASRLQNPLLRPR--ANHSSGINSTGGPAEVLNSRGAVLSLPEDLTVSFAR 1006
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10046.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJV9_9PHAE4.570e-1557.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X9_ECTSI5.650e-1456.06Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835YR31_9STRA1.100e-849.21Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1Z5KBK1_FISSO2.810e-845.83Non-specific serine/threonine protein kinase n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10046contigD-mesarthrocarpus_Contig10046:3575..3793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2X9
PFAMsHGTP_anticodon2,Pkinase,RWD,tRNA-synt_His
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K16196
KEGG Pathwayko04138,ko04140,ko04141,ko05160,ko05162,ko05164,ko05168,ko05169,map04138,map04140,map04141,map05160,map05162,map05164,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.89e-15
EggNOG OGsCOG0124@1|root,KOG1035@2759|Eukaryota
EC2.7.11.1
Descriptioneukaryotic translation initiation factor 2alpha kinase activity
Cds size216
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.9833968-UTR-D-mesarthrocarpus_Contig10046:3574..35771680789150.9833968-UTR-D-mesarthrocarpus_Contig10046:3574..3577Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10046 3575..3577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.9963267-CDS-D-mesarthrocarpus_Contig10046:3577..37931680789150.9963267-CDS-D-mesarthrocarpus_Contig10046:3577..3793Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10046 3578..3793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10046.3.1prot_D-mesarthrocarpus_Contig10046.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10046 3578..3793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10046.3.1

>prot_D-mesarthrocarpus_Contig10046.3.1 ID=prot_D-mesarthrocarpus_Contig10046.3.1|Name=mRNA_D-mesarthrocarpus_Contig10046.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=72bp
MDPSMVSHVCDSLKRVFETHGACPIAPPALRPKPPPSMAPAPATATRPVS
LLNSSGAVVTLPGDLTSSFAR*
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mRNA from alignment at D-mesarthrocarpus_Contig10046:3575..3793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10046.3.1 ID=mRNA_D-mesarthrocarpus_Contig10046.3.1|Name=mRNA_D-mesarthrocarpus_Contig10046.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10046:3575..3793+ (Discosporangium mesarthrocarpum MT17_79)
GGGATGGACCCATCCATGGTGAGCCACGTGTGCGACAGCCTCAAGCGAGT
CTTCGAGACCCACGGGGCGTGCCCCATAGCCCCCCCAGCTCTCCGACCCA
AGCCCCCGCCCTCCATGGCCCCTGCACCCGCGACAGCCACGCGGCCAGTG
AGCCTCCTCAACAGCTCCGGTGCCGTTGTGACCCTGCCTGGGGATCTTAC
CTCCTCATTCGCCAGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10046:3575..3793+

>mRNA_D-mesarthrocarpus_Contig10046.3.1 ID=mRNA_D-mesarthrocarpus_Contig10046.3.1|Name=mRNA_D-mesarthrocarpus_Contig10046.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=216bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10046:3575..3793+ (Discosporangium mesarthrocarpum MT17_79)
ATGGACCCATCCATGGTGAGCCACGTGTGCGACAGCCTCAAGCGAGTCTT
CGAGACCCACGGGGCGTGCCCCATAGCCCCCCCAGCTCTCCGACCCAAGC
CCCCGCCCTCCATGGCCCCTGCACCCGCGACAGCCACGCGGCCAGTGAGC
CTCCTCAACAGCTCCGGTGCCGTTGTGACCCTGCCTGGGGATCTTACCTC
CTCATTCGCCAGGTGA
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