mRNA_D-mesarthrocarpus_Contig1004.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1004.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig1004.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.310e-20
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 2 
Query:  287 VKLSICGDDQVD-GEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            VKL +CG+ + D G+EEMEEML +GP GKEWGGPTRGG L EPTRFGDWERKGRCSDF
Sbjct:   74 VKLDLCGEIEDDVGDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A7S3ZNR7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.140e-16
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2 
Query:  275 EPDNVKLSICGDDQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            +P   K+++  D +VD +++ME+M VD   GKEWGGPTRGGR+ EPTRFGDWERKGR +DF
Sbjct:   59 DPPPTKMNVAVDAEVDEDDDMEDMFVDTNMGKEWGGPTRGGRMPEPTRFGDWERKGRATDF 119
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.730e-16
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 2 
Query:  326 EEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            EE+ EEM++DGP GKEWGGP RGG+L+EPTRFGDWERKGRC+DF
Sbjct:   96 EEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: W7TYA2_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYA2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.540e-15
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  287 VKLSICGDDQVDGEEEMEEMLVDGPKGK-EWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            VK   CG+ + + E+EMEEM V GP G+ EWGGPTRGGR  EPTRFGDWERKGRC+DF
Sbjct:  109 VKKDTCGEVE-EAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.290e-15
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:  311 DQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            D+ D EE+ME+M+V GP G EWGGP RGG+  EPTRFGDWE+KGRC DF
Sbjct:   47 DEDDDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.360e-15
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:  311 DQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            D+ D EE+ME+M+V GP G EWGGP RGG+  EPTRFGDWE+KGRC DF
Sbjct:   42 DEDDDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A7S2BKF7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BKF7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.000e-15
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:  236 SVNVKVERTELAKE---PDNVKLSICGDDQVDGEE------EMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            + N + +  +LA E   P  VK++ CG   +D EE      E EEM V+ P G EWGGP RGGR++EP RFGDWERKGRCSDF
Sbjct:   89 AANAQQKAFDLAAELSTPQGVKMAACG---LDDEEXXXXXXEWEEMFVETPVGLEWGGPLRGGRMAEPVRFGDWERKGRCSDF 168
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:  311 DQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            D+ D EE+ME+M++ GP G EWGGP RGG+  EPTRFGDWE+KGRC DF
Sbjct:   46 DEDDDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A835YQ12_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ12_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.890e-14
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:  326 EEEMEEMLVDGPKGK-EWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            EE+ME+M V GP G  E+GGPTRGG+L+EPTRFGDWERKGRC+DF
Sbjct:    5 EEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 49
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BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.980e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:  308 DDQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
            DD  D +++ E+M+  GP G E+GGPTRGG+L EPTRFGDWERKGRCSDF
Sbjct:   47 DDLDDEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM82_ECTSI1.310e-2077.59Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3ZNR7_9STRA1.140e-1660.66Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA2.730e-1679.55Succinate dehydrogenase assembly factor 4, mitocho... [more]
W7TYA2_9STRA3.540e-1568.97Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA5.290e-1569.39Succinate dehydrogenase assembly factor 4, mitocho... [more]
W4GYH8_9STRA6.360e-1569.39Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S2BKF7_9STRA7.000e-1553.01Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A024U2R8_9STRA1.340e-1467.35Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A835YQ12_9STRA3.890e-1475.56Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA6.980e-1468.00Succinate dehydrogenase assembly factor 4, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1004contigD-mesarthrocarpus_Contig1004:7210..8545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM82
PFAMsDUF1674
Model size1182
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue3.55e-24
EggNOG OGs2CZB4@1|root,2S9G4@2759|Eukaryota
DescriptionProtein of unknown function (DUF1674)
Cds size354
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.2257903-UTR-D-mesarthrocarpus_Contig1004:7209..73151680789150.2257903-UTR-D-mesarthrocarpus_Contig1004:7209..7315Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1004 7210..7315 +
1680789150.267173-UTR-D-mesarthrocarpus_Contig1004:7823..85451680789150.267173-UTR-D-mesarthrocarpus_Contig1004:7823..8545Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1004 7824..8545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.2376938-CDS-D-mesarthrocarpus_Contig1004:7315..75261680789150.2376938-CDS-D-mesarthrocarpus_Contig1004:7315..7526Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 7316..7526 +
1680789150.2518647-CDS-D-mesarthrocarpus_Contig1004:7680..78231680789150.2518647-CDS-D-mesarthrocarpus_Contig1004:7680..7823Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1004 7681..7823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1004.4.1prot_D-mesarthrocarpus_Contig1004.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1004 7316..7823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1004.4.1

>prot_D-mesarthrocarpus_Contig1004.4.1 ID=prot_D-mesarthrocarpus_Contig1004.4.1|Name=mRNA_D-mesarthrocarpus_Contig1004.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp
MAALRQIRLTFAPGFTSLSRRSPTMPLQHCKFVSGTTETTPTKSVNVKVE
RTELAKEPDNVKLSICGDDQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLS
EPTRFGDWERKGRCSDF*
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mRNA from alignment at D-mesarthrocarpus_Contig1004:7210..8545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1004.4.1 ID=mRNA_D-mesarthrocarpus_Contig1004.4.1|Name=mRNA_D-mesarthrocarpus_Contig1004.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1336bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:7210..8545+ (Discosporangium mesarthrocarpum MT17_79)
CACGGGGTAGCACTACCAACACACCAGTCCCGCCAAACTCCCTCTCATCG
CTCCCGCACACCGCACTCACAGCGACATTCAGAGGAAAAGAACTGAAACG
TCGAACATGGCCGCATTACGCCAAATACGATTAACATTCGCGCCAGGGTT
TACCTCATTGTCTCGCCGAAGCCCAACCATGCCACTTCAACATTGTAAGT
TTGTATCAGGCACAACTGAAACAACGCCAACAAAATCAGTTAACGTCAAG
GTTGAGAGGACCGAGCTGGCGAAGGAGCCTGACAACGTCAAACTCAGTAT
CTGTGGAGACGATCAAGGTGATGTACAATGAGGCAATCATCCATCTCCAT
CTGGGAGTAGTCAGTCCCCGTGCCCGATATGGACAGGATTGACCATGTTC
ACAACAAGGACCGTTTGCTCAGACCGTTCCTATGTACCAACAATCAGTTG
ATCCCTTCCTTTTGCTCCCAGTTGATGGTGAAGAGGAAATGGAGGAAATG
CTGGTCGATGGACCCAAGGGGAAGGAGTGGGGGGGACCAACGCGAGGTGG
ACGGCTCAGCGAGCCAACGCGATTTGGGGACTGGGAGCGGAAGGGTAGAT
GCTCAGATTTCTGAGCTCATATGGAAATATTTTTAGCAAGGCAGCACGTT
ACGGGGAAGTGAAGTTAGTCTTTCCTGTCCACCCTATGCCTCTTTTTCTC
TGAGTTGATGCAAAATTAGGTTTGCTTAGAGCTGTACTTGTTCTGGCGAT
CGATCACGGGCGGTCTGTGTGGAGTTGTACAGCTTACATCGATATTTTCG
TTACTGAATTTAAGATCAAAAAAGAAAAACGTTGAGCTCAGCTTCAATGA
AGTTATGACCTGCTGCCACCCTCTTTGTATCGGAAACGAGTGGAAGAATG
TCGTAGCACCTTAAGGCCTTGTGGGGTTTTTCGTTATTGTGACGCGTTTG
TGTCCCTGACCCGATTTCACAACGTCTTGGCCTAGAGCCCACAGGCTGGG
GATACTCAGTTGTGTTGGATATTGTGTTCGATATATGGAAGAACTCCACT
GAGTTGCTGGTCTGGTTTGAAGGCAACAATGCAGTCACGATAAAACCATG
TACACATCGTGTGGTTTTATTGTACTTTATAGTATCCCACTGGTGCAATG
GGACTATGAAAGAGGGTGCTGAAGATCTTCCACACCCATGGCCAATCAGG
TTGGTTTATTCTATCCAACCTTGATCTATGGTTGACGGCAAAGACGTGTT
AACCAAGCACGGCTATGAGACAATCAATATACAGCGACTTGAAAATCTGG
TCCCATGTCAGTCAAGGGTCACACAAAGGACTTGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1004:7210..8545+

>mRNA_D-mesarthrocarpus_Contig1004.4.1 ID=mRNA_D-mesarthrocarpus_Contig1004.4.1|Name=mRNA_D-mesarthrocarpus_Contig1004.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:7210..8545+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCCGCATTACGCCAAATACGATTAACATTCGCGCCAGGGTTTACCTC
ATTGTCTCGCCGAAGCCCAACCATGCCACTTCAACATTGTAAGTTTGTAT
CAGGCACAACTGAAACAACGCCAACAAAATCAGTTAACGTCAAGGTTGAG
AGGACCGAGCTGGCGAAGGAGCCTGACAACGTCAAACTCAGTATCTGTGG
AGACGATCAAGTTGATGGTGAAGAGGAAATGGAGGAAATGCTGGTCGATG
GACCCAAGGGGAAGGAGTGGGGGGGACCAACGCGAGGTGGACGGCTCAGC
GAGCCAACGCGATTTGGGGACTGGGAGCGGAAGGGTAGATGCTCAGATTT
CTGA
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