mRNA_D-mesarthrocarpus_Contig1004.3.4 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: D7FM81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM81_ECTSI) HSP 1 Score: 218 bits (556), Expect = 3.630e-65 Identity = 114/181 (62.98%), Postives = 141/181 (77.90%), Query Frame = 3
Query: 186 VHVYSLDGKERKRVARSLQGRFGGVGMIAIPRALLRTELKGIKLGNEDRPG--MIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYS-GQRRWTSTSFCNLL 719
V VYSLD KE++RVA++L+ G ++ P LLR+ELKGIKL + R G +I+LCHYNEGRVLLTD+DGMYNDFI+EACRVTGGNVFVALAPV+TSAT LANE LVTALAY+GGQQGLLSIH+Q+RFLTW K P+E Q++ + G VP SVLE+S G++ ++SFCN+L
Sbjct: 2 VDVYSLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAYSGGQQGLLSIHIQKRFLTWNKAPSEAQVKCFRPPLDGTREPFSVPESVLEHSEGRQGGRASSFCNIL 182
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A836C8Z1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z1_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.490e-37 Identity = 80/181 (44.20%), Postives = 114/181 (62.98%), Query Frame = 3
Query: 177 PFAVHVYSLDGKERKRVARSLQGRFGGVGMIAIPRALLRTELKGIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYSGQRRWTSTSFCNLL 719
P+ + V D +ERK+ R+L RF ++ + L +ELKGIKL + + +L H++EGRVLLTD+DG+YNDF+LEA ++ GGN+ +A++ V T+ LA+E +V ALAY+GGQ+ +LSIH Q+RFLTW K P L + A+ G + L VP SV YS R FC +L
Sbjct: 9 PYTILVCGTDPRERKKTRRALAARFREQAVVG-EQPLTVSELKGIKLRGP-KTDLALLVHFSEGRVLLTDKDGLYNDFLLEAVKLAGGNLLIAVSGVETAPGTLAHEGVVQALAYSGGQRAVLSIHQQKRFLTWAKEPAPVHLDHIAAALAGNVRLLAVPDSVNMYSSALR---RRFCQIL 184
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7R9UAW8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAW8_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.500e-33 Identity = 72/182 (39.56%), Postives = 113/182 (62.09%), Query Frame = 3
Query: 183 AVHVYSLDGKERKRVARSLQG--RFGGVGMIAI-PRALLRTELKGIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYSGQRRWTSTSFCNLL 719
+VHVY+L G ER+++ + ++ + GV +A+ P+ L ELK G + +++LCHYNEGRVL+TD+DGMYNDF++ A + GGNV + ++ V TS LAN V +L + G Q + IH Q+R LTW +P+ + +LKA++G++ L++P SVLE+S + C +L
Sbjct: 3 SVHVYALLGSERRQLVKHVEQVCKTAGVKQVAVTPKKLQLKELKSDAFGLD--ASLVILCHYNEGRVLITDRDGMYNDFLVVASKNAGGNVLLVVSGVDTSDGELANTSFVDSLVWEGAQNAVGEIHTQRRLLTWNGSPSSFHKEHILKAVQGQLEPLQLPHSVLEHSSLAQPKKGFLCAIL 182
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S2XXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXL6_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.080e-30 Identity = 72/181 (39.78%), Postives = 113/181 (62.43%), Query Frame = 3
Query: 180 FAVHVYSLDGKERKRVARSLQG-RFGGVGMIAIPRALLRTELKGIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYSGQRRWTSTSFCNLL 719
+ V +YSLD +ER ++ ++ G G ++ L RT LK + L + P MI+LCHYNEGR+LLTDQDG+YN+FI EA + TGGNVF+ + +++S VLA++R+V++L + GQ + I +R LTW P+ QL+ + A+RG++ LE P ++L + ++ +C LL
Sbjct: 4 YRVDIYSLDRRERYVLSETMNGIACGEKKLVLNSNPLSRTMLKDMVLCSG--PDMIILCHYNEGRLLLTDQDGLYNNFIKEAVKATGGNVFLVVTGLSSSGGVLADKRVVSSLV-SNGQSSIQYIDSARRLLTWDGAPSRDQLEHLQLAVRGKVDPLETPETILRHCFAKK-VKAFYCVLL 180
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S1XMY7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMY7_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.960e-30 Identity = 67/168 (39.88%), Postives = 110/168 (65.48%), Query Frame = 3
Query: 186 VHVYSLDGKERKRVARSLQG--RFGGVGMIAI-PRALLRTELK-GIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYS 677
V VY++ G ER+ + ++++ + G+G + + P LL +LK G+++G + +++LCHYNEGRVLLTD+DGMYNDF++ A R GGN+ + ++ V T LAN V +L + G Q + ++ Q R LTW TP+ + +LKA++G+++ LE+P SV+EY+
Sbjct: 114 VEVYAVLGSERRALVKAVEKVCKSAGLGDVQVLPEKLLLKDLKEGVEVGAD--ASLVILCHYNEGRVLLTDRDGMYNDFLVVAHRNCGGNILLVISGVETEGDSLANTAFVDSLVWEGAQNAMGELNTQGRLLTWKGTPSSAHKEQILKALQGQLSPLELPESVIEYA 279
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S2SN66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN66_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.670e-25 Identity = 67/161 (41.61%), Postives = 97/161 (60.25%), Query Frame = 3
Query: 192 VYSLDGKERKRVARSLQGRFGGVGMIAIPRALLRTELKGIKLGNE-DRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGE--IAALEVPASV 665
VY+LD +E + VA +L+ R G G A+ R L E++ + + D P I+LCH+ EGR LLTD DG+YN F+ +A + GNVF+AL ++T VLAN +V L + GGQ + SIH +RFLT+ P E QLQ + ++ E +A L VP+ +
Sbjct: 14 VYTLDPEEHRGVAEALE-RSTGCG--AVVRPLRLKEVRHFRFPRDTDTPDAIILCHFAEGRTLLTDTDGLYNAFLSQAVPMVHGNVFLALTNISTPPEVLANSEVVAELVHQGGQGSIGSIHSARRFLTFQDEPAELQLQHIASSLAHEAPVAPLSVPSGI 171
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S3JRP1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRP1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.840e-16 Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 3
Query: 321 NEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEI--AALEVPASVLEYSGQRR 689
N +I+LCHY +GR LLTD DG+YN F++EA TGG VFVAL V LA L+ L + G Q + +H Q+RF TW P++ Q+ I++ A + E L++P S+ E++ R
Sbjct: 46 NVKEKDVILLCHYFDGRTLLTDNDGLYNTFLVEAVAATGGYVFVALTGVPADDR-LARLDLINQLTHDG-QTSISELHRQKRFFTWDSFPSKAQVNIIVSAAKDEKEQCPLQLPISIKEHAAAYR 168
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A0G4EHK5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHK5_VITBC) HSP 1 Score: 69.7 bits (169), Expect = 2.330e-10 Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 3
Query: 288 LRTELKGIKLGNEDRP-GMIVLCHYNEGRVLLTDQDGMYNDFILEAC-RVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLK 620
++ +L+G L M+V+ H NEGR+LLTD++G+YND +L+AC T NV + + V TS L + LV LA+ Q + ++ R +T+ +TP++ Q +L+
Sbjct: 1 MKAQLRGFLLAERKTAVDMVVIVHRNEGRLLLTDRNGLYND-VLQACWHATNANVVIIVTKVPTSPDTLNDSALVATLAHHADQPTIGALSAAGRLITYDQTPSQRQADYLLE 112 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1004.3.4 >prot_D-mesarthrocarpus_Contig1004.3.4 ID=prot_D-mesarthrocarpus_Contig1004.3.4|Name=mRNA_D-mesarthrocarpus_Contig1004.3.4|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=204bp MDSGDDVLPADSKLEPPTRFAEPFAVHVYSLDGKERKRVARSLQGRFGGVback to top mRNA from alignment at D-mesarthrocarpus_Contig1004:4281..7164- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1004.3.4 ID=mRNA_D-mesarthrocarpus_Contig1004.3.4|Name=mRNA_D-mesarthrocarpus_Contig1004.3.4|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2884bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:4281..7164- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1004:4281..7164- >mRNA_D-mesarthrocarpus_Contig1004.3.4 ID=mRNA_D-mesarthrocarpus_Contig1004.3.4|Name=mRNA_D-mesarthrocarpus_Contig1004.3.4|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:4281..7164- (Discosporangium mesarthrocarpum MT17_79)back to top |