mRNA_D-mesarthrocarpus_Contig10659.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10659.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10659.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.050e-38
Identity = 82/156 (52.56%), Postives = 100/156 (64.10%), Query Frame = 1
Query:    4 FVPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAA--ISGATPSDT---------------EWSHFAIGSTVNGVVVALKDYGVVL 420
            FVP +AS+V  GD++AG V RV+ FGVFVRF G F+ALCPR+    R V+ P G+F+EGDS RCV Q VD  TG+VVVTL+   VP SPA++LRS LSET ++AA   + A PS                  W     GST N VVVALK+YGVVL
Sbjct:  885 FVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRSMAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRVVVTLDRTTVPTSPALYLRSLLSETFASAAGGCAEAAPSGNLTGNEGAEASEEVARPWGRLEFGSTTNAVVVALKEYGVVL 1040          
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 8.050e-37
Identity = 78/155 (50.32%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    4 FVPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAAIS----------GATPSDTE------WSHFAIGSTVNGVVVALKDYGVVL 420
            F+P + SDV  GD++AG V RV+ FGVFVRF G F+ALCPR+    R V  P G+F+EGDS RCV Q VD  TG++VVTL+   VP SP ++LRS LSET ++AA            G   +D        W     GST N VVVALK+YGVVL
Sbjct:  938 FMPGATSDVTPGDLIAGYVIRVESFGVFVRFLGRFTALCPRSMAADRMVQDPRGMFEEGDSARCVVQRVDEDTGRLVVTLDRTTVPTSPGLYLRSLLSETFASAAAGXXXXXXDNPGGGEGADATAEVARPWGRLEFGSTTNAVVVALKEYGVVL 1092          
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.570e-27
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 1
Query:   10 PSSASDVCVGDV-LAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAAISGATPSDTEWSHFAIGSTVNGVVVALKDYGVVLS 423
            P    D+ +G   L G +SRV+ FG+FVRF GG +A+ PRA +  R VD   G+F+EGDS+RC+   VD    +V VT   + +P + + FL + L E++S   I        +W  FA+G+TVN  V A+KDYG+VLS
Sbjct:  898 PPRLQDLKIGRARLCGYISRVESFGLFVRFVGGQTAMAPRALIADRFVDDASGLFREGDSVRCLLHRVDADKDRVFVTTQRSQLPVTDSFFLETLLLESVSTIGIDTEESEVFDWQRFALGATVNATVTAVKDYGIVLS 1036          
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A2P2MJT5_RHIMU (rRNA biogenesis protein RRP5 isoform X1 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MJT5_RHIMU)

HSP 1 Score: 60.5 bits (145), Expect = 6.560e-8
Identity = 45/149 (30.20%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    7 VPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEG----VFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAAISGATPSDTE-----WSH-FAIGSTVNGVVVALKDYGVVLS 423
            +PS  S +C+  ++ G +  +   G FVRF G  +   PR    S+A+D         F  G S+     +V+  T K+ ++L  +   ++ A FL+ Y    +S   I     SDT+     W+  F+IGST+ GVV  L ++GV++S
Sbjct:  751 LPSDLSQICLQSLVPGYICNIIETGCFVRFLGHLTGFSPR----SKAMDDQRTRLSEAFYVGQSVCSNILNVNSETSKITLSLKQSCCSSTDACFLQEYF---LSEEKIFKLQHSDTKGMTLKWAEEFSIGSTIEGVVQELNEFGVIVS 892          
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A2T9YNH3_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YNH3_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 3.250e-5
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   16 SASDVC-VGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTL 243
            S+ D C VG++ AG +S++  FGVFV+FFGG+S L     +    V   E  FQ+G ++     ++D  T KV ++L
Sbjct:  831 SSIDSCKVGNIEAGFISQITKFGVFVKFFGGYSGLASINSISDHYVSSAELEFQDGQTVLAKIVAIDTQTNKVSLSL 907          
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A7S1UGX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGX6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.790e-5
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1
Query:   31 CVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSE 300
            CVG V+      V   GVFVRF GG +ALCP++      +DG    F  GD++RC+ + VD  T K  +T +   +  S A +L + L E
Sbjct:   19 CVGSVVG-----VNNAGVFVRFGGGVTALCPKS-----QIDGDRDDFTYGDAVRCLIKHVD--TEKERLTCSLKALGTSDASYLANQLRE 96          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRR9_ECTSI1.050e-3852.56rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A6H5LPP1_9PHAE8.050e-3750.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TCI2_9STRA1.570e-2742.45Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidace... [more]
A0A2P2MJT5_RHIMU6.560e-830.20rRNA biogenesis protein RRP5 isoform X1 n=2 Tax=Rh... [more]
A0A2T9YNH3_9FUNG3.250e-537.66Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
A0A7S1UGX6_9STRA3.790e-537.78Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10659contigD-mesarthrocarpus_Contig10659:320..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRR9
Preferred nameRRP5
PFAMsS1,Suf
Model size423
Max annot lvl2759|Eukaryota
KEGG koko:K14792,ko:K20353
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons2
Evalue1.72e-39
EggNOG OGsCOG0539@1|root,KOG1070@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-08_000050.1
Descriptionmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size423
COG categoryJ
BRITEko00000,ko03009,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789200.9004033-CDS-D-mesarthrocarpus_Contig10659:319..3991680789200.9004033-CDS-D-mesarthrocarpus_Contig10659:319..399Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10659 320..399 -
1680789200.9172347-CDS-D-mesarthrocarpus_Contig10659:459..8021680789200.9172347-CDS-D-mesarthrocarpus_Contig10659:459..802Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10659 460..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10659.1.1prot_D-mesarthrocarpus_Contig10659.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10659 320..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10659.1.1

>prot_D-mesarthrocarpus_Contig10659.1.1 ID=prot_D-mesarthrocarpus_Contig10659.1.1|Name=mRNA_D-mesarthrocarpus_Contig10659.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=141bp
GFVPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAV
DGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSE
TISNAAISGATPSDTEWSHFAIGSTVNGVVVALKDYGVVLS
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mRNA from alignment at D-mesarthrocarpus_Contig10659:320..802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10659.1.1 ID=mRNA_D-mesarthrocarpus_Contig10659.1.1|Name=mRNA_D-mesarthrocarpus_Contig10659.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=483bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10659:320..802- (Discosporangium mesarthrocarpum MT17_79)
GGGTTTGTGCCGTCCAGTGCCTCTGATGTTTGCGTCGGCGATGTGCTGGC TGGTTGTGTGTCTAGGGTACAAGGGTTTGGTGTGTTTGTGAGGTTCTTTG GGGGATTTTCAGCCCTGTGCCCCAGGGCATTCGTGGGCTCCAGGGCAGTT GATGGCCCGGAGGGGGTCTTCCAGGAAGGAGACAGCATCAGATGTGTAGC CCAGAGTGTGGACCCCGGCACCGGGAAAGTGGTGGTTACCCTCAACCATG CACACGTACCCGCCTCTCCTGCCATCTTTCTCCGCTCCTACCTTTCCGAA ACCATCTCCAATGCCGCAATCTCAGGGGCCACCCCCAGTGACAGTAATGG GATGGCTTTGGCTGACGGGGAGAGGGGAGAAGGGAAGGTGAGGGTGGCGG GAGCAGAATGGTCCCACTTTGCTATAGGGAGCACAGTGAATGGGGTGGTG GTGGCATTGAAAGACTACGGCGTGGTGCTCTCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10659:320..802-

>mRNA_D-mesarthrocarpus_Contig10659.1.1 ID=mRNA_D-mesarthrocarpus_Contig10659.1.1|Name=mRNA_D-mesarthrocarpus_Contig10659.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=423bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10659:320..802- (Discosporangium mesarthrocarpum MT17_79)
GGGTTTGTGCCGTCCAGTGCCTCTGATGTTTGCGTCGGCGATGTGCTGGC
TGGTTGTGTGTCTAGGGTACAAGGGTTTGGTGTGTTTGTGAGGTTCTTTG
GGGGATTTTCAGCCCTGTGCCCCAGGGCATTCGTGGGCTCCAGGGCAGTT
GATGGCCCGGAGGGGGTCTTCCAGGAAGGAGACAGCATCAGATGTGTAGC
CCAGAGTGTGGACCCCGGCACCGGGAAAGTGGTGGTTACCCTCAACCATG
CACACGTACCCGCCTCTCCTGCCATCTTTCTCCGCTCCTACCTTTCCGAA
ACCATCTCCAATGCCGCAATCTCAGGGGCCACCCCCAGTGACACAGAATG
GTCCCACTTTGCTATAGGGAGCACAGTGAATGGGGTGGTGGTGGCATTGA
AAGACTACGGCGTGGTGCTCTCC
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