Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1003.3.1 vs. uniprot
Match: A0A6H5KDX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX6_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.480e-9 Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 Query: 1 EKHSLLKWGLDVDATMWGNGTKPPPWVKVVGHTSSKWANRERTFEAVAEQAD 156
EK + KWGLDVDA W +G PPPWVK VG T++KWANRE A E+ +
Sbjct: 44 EKREMRKWGLDVDAVAWSDGFVPPPWVKAVGSTTNKWANREMAITAAREEQE 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1227 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 777 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789149.1455283-UTR-D-mesarthrocarpus_Contig1003:15247..15356 | 1680789149.1455283-UTR-D-mesarthrocarpus_Contig1003:15247..15356 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1003 15248..15356 - |
| 1680789149.1711493-UTR-D-mesarthrocarpus_Contig1003:16133..16240 | 1680789149.1711493-UTR-D-mesarthrocarpus_Contig1003:16133..16240 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1003 16134..16240 - |
| 1680789149.1810458-UTR-D-mesarthrocarpus_Contig1003:16283..16314 | 1680789149.1810458-UTR-D-mesarthrocarpus_Contig1003:16283..16314 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1003 16284..16314 - |
| 1680789149.1899717-UTR-D-mesarthrocarpus_Contig1003:18478..18597 | 1680789149.1899717-UTR-D-mesarthrocarpus_Contig1003:18478..18597 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1003 18479..18597 - |
| 1680789149.201632-UTR-D-mesarthrocarpus_Contig1003:19505..19589 | 1680789149.201632-UTR-D-mesarthrocarpus_Contig1003:19505..19589 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig1003 19506..19589 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789149.158489-CDS-D-mesarthrocarpus_Contig1003:15356..16133 | 1680789149.158489-CDS-D-mesarthrocarpus_Contig1003:15356..16133 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig1003 15357..16133 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1003.3.1 >prot_D-mesarthrocarpus_Contig1003.3.1 ID=prot_D-mesarthrocarpus_Contig1003.3.1|Name=mRNA_D-mesarthrocarpus_Contig1003.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=259bp
MKQVLHGQQGQEVNPDPKPTMAPGYCRLGVGELRDSASLGSLEPGPLVSR
CKESSVLSARPPGVEAHCGGRFTAASQLALMPNVGDHRGALAMELIRGYN
PNPNPENNQGKEKAPLAANLAPNQTLTLMRQDKACASAPRQAGCATGHVQ
EEGLGDVLEKEGCNKGTAEGGKVLLAPCGGDSEDSMGGPLTSVTSTVRVT
NSFVTLVQELPTPDATAAATLAGVGKSEEQLSNEGPSSMVVDLGGREHGP
GSESEGSQ* back to topmRNA from alignment at D-mesarthrocarpus_Contig1003:15248..19589- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig1003.3.1 ID=mRNA_D-mesarthrocarpus_Contig1003.3.1|Name=mRNA_D-mesarthrocarpus_Contig1003.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4342bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1003:15248..19589- (Discosporangium mesarthrocarpum MT17_79)
GAAAAGCACAGTCTTCTTAAATGGGGACTTGACGTTGATGCAACAATGTG
GGGAAACGGGACCAAACCACCACCTTGGGTCAAGGTGCTTTCTCTATTTT
TTTATGAAGCACATTGTGGTTCTCATAAAAAAGCTCGCCCTTTGAAGTAT
CTTGGACCCTAACCCTATCCCTAGGCATCTATAGCCAAGCACCCATGCAC
CCATGCTTCTTGGTAATTCCCTCGATCCTTTCAATCTTTGGGAAAGCCAA
AGGCTCAGGAAGCTTTGTGCCTAGAAAAAAATAACATGCCACTCAGTGCA
AAAAAAAACAAACTATTGGTCAAGCATTCCGTGGAGCCTTCCAAGTATTG
GAGTACATCCAAAGAAAGAGTTCAAAGAACTCTTCTTTGGGTTAGGGTTA
GGGTTAGGGTATAGAGTTAGCGATAGACCAGAGTGTTTGACCAAACAAAA
CAGGGTATGAGCTCAATTGAGATCAGCATTTTCTCAATTGAGGTTCAAAT
ATAGAAATTGTTTTTCACTTATTTGACAACCAAGACTATTGAATTGTCAA
AAACGAACACATTCCCCTGAAAGCTGACAGCCTCAGTTTTCTCGTGGTGT
TTTTGTCTGTTGGATATCGTCATGTTCTGTTTAGCTCTGATTTGTTTAGG
GTCTCTTGGTATTCTAACCCTAACCCTAACCCCACGGACGATAGGCTGAA
ATCTGAAATTCAATGAAGGGTTAGGGTTAGACTATTCATTTTGACAAGGA
ATTCAATGAAACATTAAAAATGGTTGGCACCCCTGAAAAGTTATGAACCT
CTGTTTTCTCATGGTGGTTTTACTTTTTTTCGTAGAGTTCGTGGTCATTG
AGGCAATTCGAAGTATGATCAATTGGGTTCTAAACTCAATTGAGAGTTTC
AAAGTTCAATTGAGTTCACACCCTGTAATAAGTGCTTGGCAGTGTGGTCG
TGACAACTGAAGTTATCAACACACAGTGGGTGGGATGAACAGGTCGTGGG
TCACACATCATCAAAGTGGGCCAACAGGGAGCGTACGTTTGAAGCAGTTG
CCGAGCAGGCTGACATGTGGAGAGACTACACGTACGTGCCCCTTGGCAGT
CACCTCTTTAGGTGAGCAGTGTGGCAAAATCAGGATGGGGAAGGAAACAG
TCACCACTTCAGGGGGTGTCACTAGCGTGATTGAGGTGGAGGAAGGATGG
AATGGGGTAGATTCATAATGTGGTACTTGGTGATCTTAATTTGGAAATGT
GGATTTCTAGTATTTTGAGCTCACCAATGATGATTGACAACAAACCAACC
GATTTTCCTGAACTGGTGATTAAAGTATTCTCCTTCCTTAATGACTCCCG
GGAGACCGGACACACTACTATCATTTCCATAATACAGCCAAAGCATCCCT
TCCTTCAATATTATCCCTTCCTTCTTCCTTCAATACCATCACTTCCTTCG
ATGGTATCGCTTGCTTCAATACGATTAGATCCTTCCATGCTATCCCGCCT
TCGATGCTATCGATGCGATTACTCCCTTCGATGCTATCAACAGCCGAATT
ATTTAATTGATGATAAAACTTGCTGAGAATCTGGATTTTTTCCTGGAGAA
AACGTTTCATGGCGATCATTTTGTTGGTGCCAGCCGTGGCAGGCTCTCCC
TGTCTGTCAACTATGTACCCAAAATCTGGATTTTTGTCATGAAACATTAG
TTTCATGCCGCCCATTTTATTTGTGCCAGTCGTGCCAGAATGTCTATTTT
GAACTATATGCTGAAAATCTGTAGTTTTCGTGGTGAAGCAGATGGGAATT
GTGAAATTTGAAAGGAAGAGGTGAGGCTACGGCGCCGTGACCGGGACCGA
GGCAAATATTTTGATGGGAAACATTGGATTTATTCTTTTCCGTTACCAGC
GAGGCAACCAAAAAGAAAATCGATCATGATGATTCAGGATTCTTTGGAAC
GTTTTGGACGTTTCCGAACAAGTGCACAGAAAAATCTCCGATTGGACGGA
AAATTGCACCACTTTTCGTATCCCTCCCCTCTCAACTGTCGAGAAATCCA
GATTCTGAACACGTAGGTCACAGACAAATATAGCTTGCCACAACTGGCAC
AACAAAATAGGCGCCATGACATGTTTTCACCAGGAAAATCCAGATTCTGA
TGAGGTTTCATCCTGAATTGAACAATAAGGGTGTTTTTTCACTCCCTTCG
ATGCCATCGCTTTCTTCACATTGGACAACTTTTTCGGTAGATTTAAGGTG
TACCTTAGAATTTAGGGTGGGGATTATAACAGTAAAGCAGTTGCAATAAC
CCATTTCAATTTTACGAGCGAAAACTTTCCACGGCCAAATCAACAAAAGT
TGAGGGGCGTTTTGTGCATTAAAACGATTCATTCTTGCTCTGTTGTCGAG
CACAAAGAAAGGTTGCAGCCTGAATTCACCGGCAGCTGAATCATCGTTAT
TACATTGTCGCTGACTGTCATTGGGCTCCAAGCAAGCCTTGTCCACAACA
AAGAGCCTAAGAATGAATGGTTTTAAAGCACGAAACCCTCCTTAACTTTC
GTTGATTTTGCCGTGGAAAGCTTTCGCTTGTATATTGAGATTTGCCATCA
CAACTGCTTTACTAATAACACAGAAATTTCTCAATGGAGATTTGAAGGTA
AAAATCGCTCTTTACTTATTTGACAAATGAAGATTATCGAATTCTCAAAA
AGGACACAATACCCTGAAAGTTGACACTCTCAGCTTCCTCATGTTTTTTT
GTTGGATATCGTCATTATTTATTTAGGTATGACTTGCTTGGGGTCTCTTG
ATGTTCCACCCCCAATGACGGTGGGCTGAAATCTGAAATTCCGTTCTGTT
CCTTTTGACAAAAAAGTTCAACGAATCATCAAAAATGGTTGACACCCCCG
TAAAGCTATTAACATTTGCTTTCTTGTGGTGGTTTTTACTTTTGTCACAG
GGTTTATAGTCAATGAGAAAATTAGAAGTATGAACAATTGGGTTCTAAAC
TCAATTCAAGAACTCCAAACTCAACTGAGAAATTTCTGTGTGTAATATAA
TCTCCACTCTAAATTCGAAGATACCCTCCAAATTTTCCGAAAAGTTATTT
TTTACTGTAATCAAGAGGTGGGATAGCACTGACTACTGTAGACATCTAAA
GATTAAACAAGAACTAGCAAACGTACAAAATGATTTAACAAGCAATCTCA
TCAAGTCACCCCTGGCTGCATTTGGATCCCTGACAGTCCCTAACTCACAG
CCACACGCCACACCTCACACTGTAGGACGCCTTCTCCAAAGGGCGCAAAC
CCTTGGGTCAAGAACCTGCCCCCTGTCTCTGACAACCGGGCACAGATAGG
GTCGTGTCGTCCAATCACCTTCCTTGACCAAGATACTGACACAGGGGAGG
AGGGGAGGTCTGGAGATGACCCCGGTCGAGTGAGGTGGAGAGAGCACCGC
GCATTCATGAAGCAGGTGTTGCATGGACAGCAGGGGCAGGAGGTTAACCC
TGACCCTAAACCCACAATGGCCCCGGGTTATTGCCGCCTTGGGGTTGGGG
AATTGAGAGACTCCGCATCCTTGGGTTCCCTGGAGCCAGGTCCACTTGTT
AGCCGTTGCAAAGAGTCATCTGTGTTAAGTGCTCGTCCACCAGGAGTAGA
GGCACACTGTGGTGGTCGATTCACAGCTGCTTCTCAGCTGGCCTTGATGC
CAAATGTGGGTGATCATCGTGGTGCTCTGGCCATGGAGCTCATCAGAGGA
TATAACCCTAACCCTAACCCAGAAAACAACCAAGGGAAGGAGAAAGCACC
ACTTGCAGCAAACCTAGCCCCAAACCAAACCCTAACCCTAATGCGACAAG
ATAAGGCTTGCGCTAGTGCACCTCGTCAGGCTGGTTGTGCAACGGGGCAT
GTCCAAGAGGAAGGGTTAGGGGATGTGTTGGAGAAGGAAGGCTGCAACAA
GGGTACCGCCGAGGGAGGGAAGGTCCTGCTGGCACCATGTGGGGGGGATA
GTGAGGACAGTATGGGAGGACCATTAACATCGGTTACTTCCACAGTACGT
GTGACTAACTCTTTCGTAACCTTGGTTCAAGAACTTCCCACACCCGATGC
CACTGCTGCTGCTACTCTTGCTGGTGTGGGAAAGTCAGAGGAACAACTAT
CAAATGAAGGTCCATCATCCATGGTTGTGGACTTGGGTGGGAGAGAACAT
GGCCCTGGCAGTGAGAGTGAGGGGTCACAGTGAAGGAATGCCTGTGTGTC
TTGTGTGTTGTGATCACCAGCACACTCCAGTGGTTGCATGGTCTTCCTCT
CCAAACATTTGAGAGTAGAGAGTATCTTCTGTGTGTAAACGA back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1003:15248..19589- >mRNA_D-mesarthrocarpus_Contig1003.3.1 ID=mRNA_D-mesarthrocarpus_Contig1003.3.1|Name=mRNA_D-mesarthrocarpus_Contig1003.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=777bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1003:15248..19589- (Discosporangium mesarthrocarpum MT17_79)
ATGAAGCAGGTGTTGCATGGACAGCAGGGGCAGGAGGTTAACCCTGACCC
TAAACCCACAATGGCCCCGGGTTATTGCCGCCTTGGGGTTGGGGAATTGA
GAGACTCCGCATCCTTGGGTTCCCTGGAGCCAGGTCCACTTGTTAGCCGT
TGCAAAGAGTCATCTGTGTTAAGTGCTCGTCCACCAGGAGTAGAGGCACA
CTGTGGTGGTCGATTCACAGCTGCTTCTCAGCTGGCCTTGATGCCAAATG
TGGGTGATCATCGTGGTGCTCTGGCCATGGAGCTCATCAGAGGATATAAC
CCTAACCCTAACCCAGAAAACAACCAAGGGAAGGAGAAAGCACCACTTGC
AGCAAACCTAGCCCCAAACCAAACCCTAACCCTAATGCGACAAGATAAGG
CTTGCGCTAGTGCACCTCGTCAGGCTGGTTGTGCAACGGGGCATGTCCAA
GAGGAAGGGTTAGGGGATGTGTTGGAGAAGGAAGGCTGCAACAAGGGTAC
CGCCGAGGGAGGGAAGGTCCTGCTGGCACCATGTGGGGGGGATAGTGAGG
ACAGTATGGGAGGACCATTAACATCGGTTACTTCCACAGTACGTGTGACT
AACTCTTTCGTAACCTTGGTTCAAGAACTTCCCACACCCGATGCCACTGC
TGCTGCTACTCTTGCTGGTGTGGGAAAGTCAGAGGAACAACTATCAAATG
AAGGTCCATCATCCATGGTTGTGGACTTGGGTGGGAGAGAACATGGCCCT
GGCAGTGAGAGTGAGGGGTCACAGTGA back to top
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