mRNA_D-mesarthrocarpus_Contig1003.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1003.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig1003.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1003.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1003contigD-mesarthrocarpus_Contig1003:21708..23206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size272
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.0922213-CDS-D-mesarthrocarpus_Contig1003:21707..217671680789149.0922213-CDS-D-mesarthrocarpus_Contig1003:21707..21767Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1003 21708..21767 -
1680789149.1037383-CDS-D-mesarthrocarpus_Contig1003:22996..231101680789149.1037383-CDS-D-mesarthrocarpus_Contig1003:22996..23110Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1003 22997..23110 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.1157825-UTR-D-mesarthrocarpus_Contig1003:23110..232061680789149.1157825-UTR-D-mesarthrocarpus_Contig1003:23110..23206Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1003 23111..23206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1003.4.1prot_D-mesarthrocarpus_Contig1003.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1003 21708..23110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1003.4.1

>prot_D-mesarthrocarpus_Contig1003.4.1 ID=prot_D-mesarthrocarpus_Contig1003.4.1|Name=mRNA_D-mesarthrocarpus_Contig1003.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=58bp
MVPVPRTRHAVMVSFAEQRSFQAQVAKEKAALKASRLYFEEQERQCHRNC
QMMWHHNH
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mRNA from alignment at D-mesarthrocarpus_Contig1003:21708..23206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1003.4.1 ID=mRNA_D-mesarthrocarpus_Contig1003.4.1|Name=mRNA_D-mesarthrocarpus_Contig1003.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1499bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1003:21708..23206- (Discosporangium mesarthrocarpum MT17_79)
ATTTATCAGAGATTACTTCTGAAAAATAGGAGAGCGACTGCTTCTAGCCG
ATGAAAGTGGTTCCTTGTTTCTTGCAACTTCCGTGGTAGAGTTGCAATGG
TGCCAGTACCACGGACGAGGCATGCGGTAATGGTCTCCTTCGCGGAGCAG
AGGAGTTTCCAGGCGCAAGTGGCCAAGGAGAAGGCGGCTTTGAAGGCGTC
GAGGTTGTACGTAAGTTCGAAGGACAAGCTCCAACGCATGACAACTTGTG
GGTTGAGGATCTCCCGTGTGTTCCGGGTCAGTCTTCATGCTGTTCGTCAC
TGCTGTTTTGTCGCAAGGCGTGTCGTGGTCGTTTGGTGCCGCGAGATTCC
ACGAAATGTGTGCCCATTCTTGATGATCCCCCAAACGCACGGTGATAAGA
TTGAGTGAAAGTGGTGTGCTCTTATTTATGCATGGCGTGATTCTAAAATG
GCCGCACCTGTATCCCGATTTGCCAGGGAGTGTTGCGCCGGCCGAATTCG
TCTACCCAAGAGTCAAACCTCGGGACACACAACCAACGATGGTTTGGAAA
CATTATACACATCATAGACATTGGTCCTATGCCAGAAAGAAAGAGGACTA
CAAATTTGTTAGGATATTTCTTTGTCATAGGAGCGGCACCCCCTGCAAAG
AGAGTCACACGAACGACCAACTTGTTCAGGGAGGCTCTCTTGCGATTACC
TAATGCTGTCCGCTTGATAGCGGCAGGGAACAAGCATCTCCCCCCGAGCG
AGCAACACGCTCGCTCCAAGTAACTGGAGCAATGTACTAGACCGAAAAAA
GAGAGTAGACAAGTGCTCAACGTAGTCCAGAGCACAAGGTCATGAATGCC
TGAATCACACCTGAATCATCAATTACTACGAGGTACATTACTTACGTACA
AAGTACCTGATGCAGGCAAAATAAACAGGAGGACTGATAGGGATACCGAA
AATGATAGCATTGTTAAGTACCCTCTGGGTCTCTTCTTTCAAGTTATACT
TTGAAGAAATATGTGGAATTCAGGTCAAACGTCATCCGTTCTTCACCTAG
TAGCAGGGCTTGCTTCTGGATGCACAAAAGTAGTATCTTCTGTCTCCTGG
CCACAAACACCTGCACCCTTTCCTCAGGGGAAAGCCAAATGTCGATATGT
CAATATGTCGATGTGTCAATAACTCAGTTTGTGACACAGAACTCACACCT
TTTGCCGTGTTGATCTCAAAGTGGGGGGCGGCACAACCATAACCCTAATC
ATTACCTTGCGCTGTGCGTCATTCAATCCTTAACCCTAACCCTAATATCC
GATTGAAGTACAAGCATCAGTGGCATTAAGCATCAAGCATTATGCATTAT
GACACTCCGTACATAGTACTTACGGCACATGATCGCGGCAGAAAACATCT
TGTATCCTTACCTGGCGTGTGATATGTTTCATTTGGCAGTTCGAGGAGCA
GGAACGGCAATGCCACCGAAACTGCCAAATGATGTGGCATCACAACCAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1003:21708..23206-

>mRNA_D-mesarthrocarpus_Contig1003.4.1 ID=mRNA_D-mesarthrocarpus_Contig1003.4.1|Name=mRNA_D-mesarthrocarpus_Contig1003.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1003:21708..23206- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGCCAGTACCACGGACGAGGCATGCGGTAATGGTCTCCTTCGCGGA
GCAGAGGAGTTTCCAGGCGCAAGTGGCCAAGGAGAAGGCGGCTTTGAAGG
CGTCGAGGTTGTACTTCGAGGAGCAGGAACGGCAATGCCACCGAAACTGC
CAAATGATGTGGCATCACAACCAT
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