mRNA_D-mesarthrocarpus_Contig10027.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10027.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10027.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10027.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10027contigD-mesarthrocarpus_Contig10027:3486..4374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size889
Hectar predicted targeting categorysignal peptide
Exons1
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.903608-UTR-D-mesarthrocarpus_Contig10027:3485..38181680789148.903608-UTR-D-mesarthrocarpus_Contig10027:3485..3818Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10027 3486..3818 -
1680789148.9302707-UTR-D-mesarthrocarpus_Contig10027:4343..43741680789148.9302707-UTR-D-mesarthrocarpus_Contig10027:4343..4374Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10027 4344..4374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.9143655-CDS-D-mesarthrocarpus_Contig10027:3818..43431680789148.9143655-CDS-D-mesarthrocarpus_Contig10027:3818..4343Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10027 3819..4343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10027.3.1prot_D-mesarthrocarpus_Contig10027.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10027 3819..4343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10027.3.1

>prot_D-mesarthrocarpus_Contig10027.3.1 ID=prot_D-mesarthrocarpus_Contig10027.3.1|Name=mRNA_D-mesarthrocarpus_Contig10027.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=175bp
MGLLIKSWPWSFPWLQIAGPLCHLVLLLSVGLSVYVHDMLRLLMGSFLCM
RWVGHGRVFVLWWYVRPPTQGTVSRHGVKKCTEVRGSPSPNPNTTPSKEK
GWWPEGEVDTTNLGKALGVVLSFMFCFSSSLRALIVLRKDVKGKGCDGVL
SLSPLLHPPLTPLVHVRSGSSCGP*
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mRNA from alignment at D-mesarthrocarpus_Contig10027:3486..4374-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10027.3.1 ID=mRNA_D-mesarthrocarpus_Contig10027.3.1|Name=mRNA_D-mesarthrocarpus_Contig10027.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=889bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10027:3486..4374- (Discosporangium mesarthrocarpum MT17_79)
TAGAGGTACACTGTGAGGAAGCGCAAAGCACATGGGCCTCCTCATCAAGT
CCTGGCCATGGTCGTTTCCGTGGCTCCAGATAGCAGGCCCTCTATGTCAC
CTTGTCTTGCTTTTGTCTGTGGGTTTGTCTGTTTATGTGCATGACATGCT
CCGCCTTTTGATGGGGAGCTTTCTCTGCATGCGCTGGGTTGGTCATGGCA
GGGTTTTTGTGTTATGGTGGTACGTCAGGCCACCTACACAGGGCACAGTT
TCTAGGCATGGTGTCAAAAAGTGTACAGAGGTTAGGGGTAGCCCTAGCCC
TAACCCTAACACTACCCCAAGCAAGGAAAAGGGGTGGTGGCCGGAAGGAG
AGGTGGACACAACAAACTTGGGGAAGGCCCTTGGTGTGGTGCTCTCTTTT
ATGTTTTGCTTTTCTTCTAGCTTGCGTGCGTTAATTGTTTTAAGGAAAGA
CGTAAAAGGTAAGGGTTGTGATGGGGTACTTTCTCTGTCTCCCCTACTAC
ACCCACCGCTCACACCACTCGTCCATGTCAGGAGTGGGAGCAGCTGTGGG
CCTTAGTCGTGAAAAAATCCCATGGTTGCCAGGTAGATTGCTAGGTTCTG
GCCTTTCCCTTCGGGTTTTTTTTGTACCTTTTGGGTACACAATTTTGTTT
CTTCTGTGTCTATGTGTATGTGATAACGTGATTTGTTTTCGTGTATGTAG
TGCTTTTATGTAGGGAGTGATGAGAGTGCCCTGATCTGTATGTGGGAAGG
GTGGGGAAATCACTGCGTGTATGCACAGCCAACTGTTTGTTCATGTGACT
GTTTATTGGCTGTTGTGCTACAAAGTATGGGTGGGTGGGATTAAGGTGGA
GGGGAGGGCCTTGCACTTGAGTCAAGAATTTGACTTTTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10027:3486..4374-

>mRNA_D-mesarthrocarpus_Contig10027.3.1 ID=mRNA_D-mesarthrocarpus_Contig10027.3.1|Name=mRNA_D-mesarthrocarpus_Contig10027.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=525bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10027:3486..4374- (Discosporangium mesarthrocarpum MT17_79)
ATGGGCCTCCTCATCAAGTCCTGGCCATGGTCGTTTCCGTGGCTCCAGAT
AGCAGGCCCTCTATGTCACCTTGTCTTGCTTTTGTCTGTGGGTTTGTCTG
TTTATGTGCATGACATGCTCCGCCTTTTGATGGGGAGCTTTCTCTGCATG
CGCTGGGTTGGTCATGGCAGGGTTTTTGTGTTATGGTGGTACGTCAGGCC
ACCTACACAGGGCACAGTTTCTAGGCATGGTGTCAAAAAGTGTACAGAGG
TTAGGGGTAGCCCTAGCCCTAACCCTAACACTACCCCAAGCAAGGAAAAG
GGGTGGTGGCCGGAAGGAGAGGTGGACACAACAAACTTGGGGAAGGCCCT
TGGTGTGGTGCTCTCTTTTATGTTTTGCTTTTCTTCTAGCTTGCGTGCGT
TAATTGTTTTAAGGAAAGACGTAAAAGGTAAGGGTTGTGATGGGGTACTT
TCTCTGTCTCCCCTACTACACCCACCGCTCACACCACTCGTCCATGTCAG
GAGTGGGAGCAGCTGTGGGCCTTAG
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