mRNA_D-mesarthrocarpus_Contig10021.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10021.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10021.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A3D2BR89_9PROT (DUF4440 domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BR89_9PROT)

HSP 1 Score: 202 bits (513), Expect = 1.220e-64
Identity = 96/123 (78.05%), Postives = 108/123 (87.80%), Query Frame = 1
Query:   13 DNDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            D+DIAELR+LEERRYAAM AGD DVLEELLHD+LAYMHSTG+LESK+ Y+  LRAGTSAYK I  DDQ IR+H D+ MVFHHL AD VF+G++RHLDNRLLAVWSRD GKWRM+GLQSGP VK
Sbjct:   26 DSDIAELRDLEERRYAAMKAGDIDVLEELLHDELAYMHSTGDLESKEGYLGGLRAGTSAYKRIEYDDQTIRVHDDLAMVFHHLVADAVFEGSDRHLDNRLLAVWSRDGGKWRMIGLQSGPAVK 148          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A2D7FLS4_9PROT (DUF4440 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLS4_9PROT)

HSP 1 Score: 195 bits (495), Expect = 3.400e-62
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 1
Query:    1 MSKHDNDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            MS  +++I  LR LEERRYAAMLAGDA VLEELLH +LAYMHSTGELESK+SY+ TLRAGTSAYK I+ DDQ IRI+ ++G+VFHHLEADVVF+GN RHLDNRLLAVW RD G W+ML LQSGPV +
Sbjct:    1 MSDAESEILNLRALEERRYAAMLAGDAGVLEELLHPELAYMHSTGELESKESYLRTLRAGTSAYKSIKCDDQTIRIYKEVGLVFHHLEADVVFEGNARHLDNRLLAVWVRDGGNWQMLALQSGPVPR 127          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A2S6QCD2_9PROT (DUF4440 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QCD2_9PROT)

HSP 1 Score: 189 bits (481), Expect = 4.070e-60
Identity = 90/121 (74.38%), Postives = 105/121 (86.78%), Query Frame = 1
Query:   19 DIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            DI EL +LEE+RY+AML  D  VLE+LLHDDLAYMHSTG+LE+K+SY+ +L  GTSAYKMIR +D+ IR+H +IG+VFHHLEADVVF G ERHLDNRLLAVWSRD GKWRML LQSGPVV+
Sbjct:    3 DITELEDLEEKRYSAMLDADVAVLEDLLHDDLAYMHSTGDLENKESYVSSLSEGTSAYKMIRCNDRTIRVHNNIGLVFHHLEADVVFHGIERHLDNRLLAVWSRDGGKWRMLALQSGPVVR 123          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A2D8G4I1_9PROT (DUF4440 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G4I1_9PROT)

HSP 1 Score: 180 bits (457), Expect = 1.970e-56
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   19 DIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            DI+ +R+LEERRY AM  GD   LE LLHD+LAYMHSTG+LESK+ Y+D LR+GTSAYK I   DQKIR+H DI MVFHHL AD VF GN+RHLDNRLLA+W R+ G+WRM+GLQSGPV+K
Sbjct:    5 DISLIRDLEERRYTAMREGDIKALEVLLHDELAYMHSTGDLESKKGYLDGLRSGTSAYKKIEYGDQKIRVHGDIAMVFHHLIADAVFAGNDRHLDNRLLAIWVREDGQWRMIGLQSGPVLK 125          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A2E3XBS4_9PROT (DUF4440 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XBS4_9PROT)

HSP 1 Score: 131 bits (330), Expect = 4.850e-37
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   19 DIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            D+A++  LE +RY AML  D  VL +LLH++L Y HSTG L++K+ Y++ LR   S YK ++ DDQ +RI  DIG+VF+H++     +G+E  LDNRLLAVW+RD G WR+L +QSG + K
Sbjct:    7 DVAKIEELENKRYDAMLNADIHVLNDLLHENLIYSHSTGGLDTKEIYLNALRDKVSIYKSVKRDDQTVRITGDIGLVFNHVQIHAEHKGSELRLDNRLLAVWTRDKGIWRLLAIQSGAIPK 127          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: UPI00159C36E5 (nuclear transport factor 2 family protein n=1 Tax=Sphingobium sp. 15-1 TaxID=2729616 RepID=UPI00159C36E5)

HSP 1 Score: 103 bits (257), Expect = 5.400e-26
Identity = 45/118 (38.14%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   28 ELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            ++R+ E+ R+AA++  D   LE LLH +L Y HS+G  +++++YI+ LRAG   Y+ +   ++ I +    G+VF+ L  D++F+G  +H++ R L+VW RD G+WR++ +QSG V +
Sbjct:    8 QIRDAEDARFAAVIGADIPALESLLHKELLYRHSSGFADTRETYIEGLRAGLWVYRAVDRSEETISVSGHTGLVFNRLCIDLLFRGERKHVNARALSVWVRDDGQWRLIAVQSGAVPR 125          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: UPI001CAF4583 (nuclear transport factor 2 family protein n=1 Tax=Cupriavidus laharis TaxID=151654 RepID=UPI001CAF4583)

HSP 1 Score: 98.2 bits (243), Expect = 8.840e-24
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   13 DNDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPVVK 381
            D  ++EL   ++ RY AML GD D L+ LLH+DL+Y HS+   E K +Y+++LR+G   Y    V +   ++H D+ ++        +    ER LDNR L+VW RD G WRML   S P+ K
Sbjct:   12 DQALSELDRADQARYRAMLDGDLDALDRLLHEDLSYTHSSALQEGKAAYLESLRSGHVRYXXADVQEVVRQLHGDVAVMQGKALLRAIVDEVERTLDNRFLSVWKRDGGGWRMLAWASTPIPK 134          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: UPI001FEDFAA5 (nuclear transport factor 2 family protein n=1 Tax=Burkholderia perseverans TaxID=2615214 RepID=UPI001FEDFAA5)

HSP 1 Score: 96.7 bits (239), Expect = 2.630e-23
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   16 NDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSGPV 375
            N++ E+R  E+RRYAA +  + +VL+EL HD L YMHS+G  +SK SY+D +R G   Y      + +I I  D+ +VF  L   +   G+ R  D R LAVW R   +WR+L + SG +
Sbjct:    2 NELDEIRACEDRRYAAAVEKNIEVLDELFHDRLIYMHSSGVTDSKTSYLDGIREGVWDYHGTERSEPRIVISGDVALVFADLSIRMTTCGDYRAFDTRALAVWQRCDDRWRLLSVHSGAI 121          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A1G5A3T9_9BURK (Ketosteroid isomerase homolog n=1 Tax=Variovorax sp. EL159 TaxID=1566270 RepID=A0A1G5A3T9_9BURK)

HSP 1 Score: 94.4 bits (233), Expect = 2.370e-22
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 MSKHDNDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSG 369
            M+++D  I  +R L++ RYAAM+A D D LE+LL D L YMHS+G  ++K +YI+ L  G   Y  I  ++ + +I  D+ ++F  L   +  +G  +   +  LAVW + +G WR+L +QSG
Sbjct:    1 MTRNDETIERIRQLDDERYAAMVAKDVDSLEKLLDDKLIYMHSSGVADTKATYIEGLSTGVWDYHGIDREELRHQIDGDVALMFSRLFIRMTNRGTYKEFGSHALAVWVKKSGIWRLLAVQSG 123          
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Match: A0A2Z5G022_9BACT (DUF4440 domain-containing protein n=2 Tax=Acidisarcina polymorpha TaxID=2211140 RepID=A0A2Z5G022_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 9.250e-22
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   13 DNDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESKQSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHLDNRLLAVWSRDAGKWRMLGLQSG 369
            +N+++E+  LE+RRYAAML+ D + LEELLH+ L ++HSTG   +K +Y+  LR     Y  I    Q I +     +VF+HL   +  +G    L N+ L+VW  + G W+++ + SG
Sbjct:    4 ENNMSEIERLEDRRYAAMLSRDVETLEELLHERLLHVHSTGNQHTKAAYLVGLRERAWEYHQIDRSQQNIIVQGSTALVFNHLFLRLELKGKAIELRNQALSVWIHEQGVWQLIAMHSG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10021.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2BR89_9PROT1.220e-6478.05DUF4440 domain-containing protein n=2 Tax=Rhodospi... [more]
A0A2D7FLS4_9PROT3.400e-6274.80DUF4440 domain-containing protein n=1 Tax=Rhodospi... [more]
A0A2S6QCD2_9PROT4.070e-6074.38DUF4440 domain-containing protein n=1 Tax=Alphapro... [more]
A0A2D8G4I1_9PROT1.970e-5670.25DUF4440 domain-containing protein n=1 Tax=Alphapro... [more]
A0A2E3XBS4_9PROT4.850e-3750.41DUF4440 domain-containing protein n=1 Tax=Rhodospi... [more]
UPI00159C36E55.400e-2638.14nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI001CAF45838.840e-2439.84nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI001FEDFAA52.630e-2340.83nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A1G5A3T9_9BURK2.370e-2238.21Ketosteroid isomerase homolog n=1 Tax=Variovorax s... [more]
A0A2Z5G022_9BACT9.250e-2237.82DUF4440 domain-containing protein n=2 Tax=Acidisar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10021contigD-mesarthrocarpus_Contig10021:1560..1943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog977880.RALTA_A0681
PFAMsDUF4440
Model size384
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.03e-21
EggNOG OGsCOG4319@1|root,COG4319@2|Bacteria,1NDE4@1224|Proteobacteria,2VY1F@28216|Betaproteobacteria,1K7XV@119060|Burkholderiaceae
DescriptionDomain of unknown function (DUF4440)
Cds size384
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.414361-CDS-D-mesarthrocarpus_Contig10021:1559..19431680789148.414361-CDS-D-mesarthrocarpus_Contig10021:1559..1943Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10021 1560..1943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10021.2.1prot_D-mesarthrocarpus_Contig10021.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10021 1560..1943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10021.2.1

>prot_D-mesarthrocarpus_Contig10021.2.1 ID=prot_D-mesarthrocarpus_Contig10021.2.1|Name=mRNA_D-mesarthrocarpus_Contig10021.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=128bp
MSKHDNDIAELRNLEERRYAAMLAGDADVLEELLHDDLAYMHSTGELESK
QSYIDTLRAGTSAYKMIRVDDQKIRIHADIGMVFHHLEADVVFQGNERHL
DNRLLAVWSRDAGKWRMLGLQSGPVVK*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10021:1560..1943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10021.2.1 ID=mRNA_D-mesarthrocarpus_Contig10021.2.1|Name=mRNA_D-mesarthrocarpus_Contig10021.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=384bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10021:1560..1943- (Discosporangium mesarthrocarpum MT17_79)
ATGTCCAAACATGACAATGATATTGCAGAACTGCGTAACCTCGAAGAGCG GCGCTATGCGGCGATGCTTGCAGGCGACGCGGATGTTCTGGAGGAACTGC TCCACGACGATCTTGCCTACATGCATTCCACAGGAGAACTGGAATCGAAG CAGAGTTACATCGACACGCTGCGTGCCGGTACGTCGGCCTACAAGATGAT ACGGGTGGACGATCAGAAGATTCGTATCCACGCCGATATCGGTATGGTGT TTCACCATCTTGAAGCTGACGTCGTGTTCCAGGGAAACGAGCGCCACCTC GATAACCGGCTGCTTGCCGTCTGGTCGCGCGACGCTGGCAAATGGCGCAT GCTGGGCCTGCAATCAGGGCCGGTGGTCAAATAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10021:1560..1943-

>mRNA_D-mesarthrocarpus_Contig10021.2.1 ID=mRNA_D-mesarthrocarpus_Contig10021.2.1|Name=mRNA_D-mesarthrocarpus_Contig10021.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=384bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10021:1560..1943- (Discosporangium mesarthrocarpum MT17_79)
ATGTCCAAACATGACAATGATATTGCAGAACTGCGTAACCTCGAAGAGCG
GCGCTATGCGGCGATGCTTGCAGGCGACGCGGATGTTCTGGAGGAACTGC
TCCACGACGATCTTGCCTACATGCATTCCACAGGAGAACTGGAATCGAAG
CAGAGTTACATCGACACGCTGCGTGCCGGTACGTCGGCCTACAAGATGAT
ACGGGTGGACGATCAGAAGATTCGTATCCACGCCGATATCGGTATGGTGT
TTCACCATCTTGAAGCTGACGTCGTGTTCCAGGGAAACGAGCGCCACCTC
GATAACCGGCTGCTTGCCGTCTGGTCGCGCGACGCTGGCAAATGGCGCAT
GCTGGGCCTGCAATCAGGGCCGGTGGTCAAATAG
back to top