mRNA_D-mesarthrocarpus_Contig1002.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1002.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig1002.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1002.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1002contigD-mesarthrocarpus_Contig1002:5983..7356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1376
Hectar predicted targeting categoryother localisation
Exons1
Cds size882
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.8054311-CDS-D-mesarthrocarpus_Contig1002:5982..68641680789147.8054311-CDS-D-mesarthrocarpus_Contig1002:5982..6864Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1002 5983..6864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.816889-UTR-D-mesarthrocarpus_Contig1002:6864..73561680789147.816889-UTR-D-mesarthrocarpus_Contig1002:6864..7356Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1002 6865..7356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1002.3.1prot_D-mesarthrocarpus_Contig1002.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1002 5983..6864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1002.3.1

>prot_D-mesarthrocarpus_Contig1002.3.1 ID=prot_D-mesarthrocarpus_Contig1002.3.1|Name=mRNA_D-mesarthrocarpus_Contig1002.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=294bp
MSYQGHVFRGVSVEEDLDSAPKYRSASRPGSSPFPGGGMGIRMTTGKDVA
EYGDLQVKSVNCLPPPSALRQPHREDDTLNLSHPANAMYIEQNVITTRAP
PSVGSVPLLSSREENSSRCPTQKWPENGYQKTPVQAMYQPDVAPENPPFL
RLLRTHFKTVAGARYSMDGLTQMFRANSIAVKVMGAFRLACSVQVRHKLV
RFSVRFLRGQEEESETTIIEFQREEGCGLSFSDIYRSARTAFQGWEQGEG
IAAGALAATLNSTGIPPVAPLRKTSGAGAVPGVVGQPWLEAGPT
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mRNA from alignment at D-mesarthrocarpus_Contig1002:5983..7356-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1002.3.1 ID=mRNA_D-mesarthrocarpus_Contig1002.3.1|Name=mRNA_D-mesarthrocarpus_Contig1002.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1374bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1002:5983..7356- (Discosporangium mesarthrocarpum MT17_79)
AGAAAGCAACTCGCCAAGCAATTGAGGTACAGCACCACACTTTAAGTCAG
CACCTGCCCATCATCTGCCCTCGTTGCCCGTGGTGAGATTGCAAGACATC
AAGACTTGTGCGTTAGATTTGGATTCGATGAGCATCTGCTCTGCTCTGTG
GAAACATTCCCAACGCCTGACTGACCCTTCAGTTTGTTACGTCGTAACAG
CCTCGACCTCAGTTGACAATGCGACTATCTCTGTTGCGCCACCAGTGTTG
AATGTAATTCATTGTGCTTTAGTGTGGAGTTCACATTGTTCGTGTTGCAG
CGAATTTAGTCATGATGTCGGGTCTGAGCCGTTCCTCTCTAGGAGAGGAC
GAAGAACGCGCCCGGAACAACAAACGTCGAGTTAACCTTAGGGGATGCCC
CCTCTCATCTGCTTGATCTCAGATCTTCACGATCGTGGAGCCTGTTAAAG
CGTGGACTAGCTGAACATTTGTGGGTCGGGTTCTCAAAGACGATGTCTTA
CCAAGGGCACGTGTTCCGCGGGGTCTCGGTTGAGGAAGACCTCGACTCAG
CTCCCAAGTATCGCTCTGCCTCCCGACCGGGCAGTTCCCCGTTTCCGGGA
GGTGGGATGGGGATAAGGATGACTACTGGGAAAGATGTGGCGGAGTACGG
TGACCTTCAGGTCAAGTCTGTGAACTGCCTGCCCCCTCCATCGGCCTTGC
GGCAGCCACATCGGGAGGACGACACCCTCAACTTGTCGCACCCTGCCAAC
GCAATGTACATAGAGCAGAATGTGATCACGACCCGGGCACCCCCGAGCGT
TGGCAGTGTCCCCTTGTTGAGCAGTCGAGAAGAAAATTCTTCCCGGTGCC
CTACGCAAAAGTGGCCCGAGAATGGCTACCAAAAGACGCCAGTTCAGGCC
ATGTACCAACCTGACGTAGCCCCGGAGAATCCGCCGTTCTTGCGGCTGCT
GCGCACACACTTCAAAACGGTTGCCGGGGCGCGGTACTCAATGGACGGGC
TGACCCAGATGTTCCGCGCTAATTCGATTGCTGTGAAGGTTATGGGGGCC
TTCCGGCTAGCCTGCTCGGTCCAGGTGCGGCACAAGCTGGTCCGTTTTTC
AGTACGTTTTCTCAGGGGGCAAGAGGAGGAAAGCGAAACGACTATTATCG
AGTTCCAGCGCGAGGAAGGCTGCGGGCTCTCGTTCTCTGATATTTATCGA
AGTGCCCGCACAGCGTTCCAGGGCTGGGAGCAGGGGGAGGGGATCGCTGC
AGGAGCCCTGGCTGCAACACTTAATTCGACGGGTATACCCCCAGTAGCAC
CCTTGCGGAAGACATCTGGAGCTGGTGCTGTACCAGGGGTTGTGGGGCAG
CCATGGTTAGAGGCTGGACCTACT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1002:5983..7356-

>mRNA_D-mesarthrocarpus_Contig1002.3.1 ID=mRNA_D-mesarthrocarpus_Contig1002.3.1|Name=mRNA_D-mesarthrocarpus_Contig1002.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=882bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1002:5983..7356- (Discosporangium mesarthrocarpum MT17_79)
ATGTCTTACCAAGGGCACGTGTTCCGCGGGGTCTCGGTTGAGGAAGACCT
CGACTCAGCTCCCAAGTATCGCTCTGCCTCCCGACCGGGCAGTTCCCCGT
TTCCGGGAGGTGGGATGGGGATAAGGATGACTACTGGGAAAGATGTGGCG
GAGTACGGTGACCTTCAGGTCAAGTCTGTGAACTGCCTGCCCCCTCCATC
GGCCTTGCGGCAGCCACATCGGGAGGACGACACCCTCAACTTGTCGCACC
CTGCCAACGCAATGTACATAGAGCAGAATGTGATCACGACCCGGGCACCC
CCGAGCGTTGGCAGTGTCCCCTTGTTGAGCAGTCGAGAAGAAAATTCTTC
CCGGTGCCCTACGCAAAAGTGGCCCGAGAATGGCTACCAAAAGACGCCAG
TTCAGGCCATGTACCAACCTGACGTAGCCCCGGAGAATCCGCCGTTCTTG
CGGCTGCTGCGCACACACTTCAAAACGGTTGCCGGGGCGCGGTACTCAAT
GGACGGGCTGACCCAGATGTTCCGCGCTAATTCGATTGCTGTGAAGGTTA
TGGGGGCCTTCCGGCTAGCCTGCTCGGTCCAGGTGCGGCACAAGCTGGTC
CGTTTTTCAGTACGTTTTCTCAGGGGGCAAGAGGAGGAAAGCGAAACGAC
TATTATCGAGTTCCAGCGCGAGGAAGGCTGCGGGCTCTCGTTCTCTGATA
TTTATCGAAGTGCCCGCACAGCGTTCCAGGGCTGGGAGCAGGGGGAGGGG
ATCGCTGCAGGAGCCCTGGCTGCAACACTTAATTCGACGGGTATACCCCC
AGTAGCACCCTTGCGGAAGACATCTGGAGCTGGTGCTGTACCAGGGGTTG
TGGGGCAGCCATGGTTAGAGGCTGGACCTACT
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