mRNA_D-mesarthrocarpus_Contig10018.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10018.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10018.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 5.240e-64
Identity = 135/380 (35.53%), Postives = 185/380 (48.68%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSF--------------LTFQHDRMAASMVSSLWSEGANHDTFKKKVPHD--------------------------------------------------------------------------------------------QLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPNSGPLVEVIRNGKLEMSACHLSNKNAGPRAPTLSVIGDRSLLFLDRCHCEGAPGSGVRALQGGIIAIGACEIKGS 825
            R +F +ER+R+V+ RKKRLLTG+AWE R D +SK+PFWYNRDTGEAIWDKP VV  RE +A+ALE  Y G+P PLL++ +                L  +  R AA++   L +                                                                                                           +LE G + ++  AL  +  GDT+ LGPGHHWE   DL  DK V+++G+  DPSRV++E+TG VRW+A +G++ GV+LRRP+PCP+ GPL++V   G L++SACH++NK AG  +P L V    S+LFL+RC  + A G GV    GG +A+  CEI GS
Sbjct: 2430 RDMFSRERARAVSERKKRLLTGDAWELRPDAVSKMPFWYNRDTGEAIWDKPHVVAAREAHAKALEERYSGLPQPLLLKDVCSGGVPTMVGRGSSQDLQAEGVRDAAALAQKLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLEPGQYKSIADALAAAEAGDTVVLGPGHHWEE--DLSSDKAVRILGEATDPSRVLVEMTGSVRWTAPKGLVVGVSLRRPRPCPDKGPLIKVDSGGNLQLSACHVNNKQAGEASPGLEVTDANSILFLERCRVQDARGDGVSCGPGGSVAVVGCEISGS 2807          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.470e-55
Identity = 113/284 (39.79%), Postives = 159/284 (55.99%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEGANHDTFKKKVPHDQLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRG--------------DLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPNSGPLVEVIRNGKLEMSACHLSNKNAGPRAPTLSVIGDRSLLFLDRCHCEGAPGSGVRALQGGIIAIGACE 813
            R +F +ER+R+V+ RKKRLLTG+AWE R D +SK+PFWYNRDTG+           R  ++R++        L  L RV+ +L    DRM A+ V   W EGA H TFK +V   +      A L + L                                   DL  D+ V+++G+  DPSRV++E+TG VRW+A +G++ GV+LRRP+PCP+ GPL++V   G L++SACH++NK AG  +P L V    S+LFL+RC  + A G GV    GG +A+  CE
Sbjct: 2096 RDMFSRERARAVSERKKRLLTGDAWELRPDAVSKMPFWYNRDTGD-----------RTSFSRSIA-------LSRLQRVMRYLKATPDRMCAAEVCQPWLEGARHKTFKLRVLPVEAGVRDAAALAQKLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLSSDRAVRILGEATDPSRVLVEMTGSVRWTAPKGLVVGVSLRRPRPCPDKGPLIKVDSGGNLQLSACHVNNKQAGEASPGLEVTDANSILFLERCRVQDARGDGVSCGPGGSVAVVGCE 2361          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A7S3V8R8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8R8_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.280e-45
Identity = 99/298 (33.22%), Postives = 160/298 (53.69%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEGANHDTFKKKV----------PHDQLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPNSGPLVEVIR---NGKLEMSACHLSNKNAGPRAPTLSVIGD-----RSLLFLDRCHCEGAPGSGVRALQGGIIAIGACEIKGSGQAGVE 843
            R L+ +E+SR +A +K+R LTGE W  +IDG SKLPFWYN DTGEAIW+KP V+   E Y RA ++ +  +PL  L  ++  L    +RM  + V   W + A   +F + V             +++   + T+ +AL++  PGDTIELG GH+W    +L ++  ++++GD +DPS VV+EL+G V W+  +G ++GVT RRP+   +     E+IR    G++E + C +          +LS   +     +  L L+        G+GV  +    +++    I G+    V+
Sbjct: 1743 RHLYFREKSRLLANKKRRKLTGENWTTKIDGKSKLPFWYNSDTGEAIWEKPKVINELEEYERANQKQWNAVPLKSLFNMMEHLLPFPERMKCASVCKHWRKAAQDISFVRHVFPVEMGALSMDRAKMDHYHYRTIAEALQNCLPGDTIELGDGHYWVNESELSINFPLRIIGDEKDPSHVVIELSGTVAWNGDKGFVEGVTFRRPRMNLDEKKANELIRIGVGGRVEFAKCAVEGTREKVATASLSEFKECGFLVKGKLILNDSAISNVQGNGVECMNNSSVSLLGSRIVGNSGLAVQ 2040          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A7S2UQZ8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQZ8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.380e-45
Identity = 110/316 (34.81%), Postives = 166/316 (52.53%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEGANHDTFKKKV-PHDQ----LEDGS-----FATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRW-SATRGVIQGVTLRRPKPCPN---SGPLVEVIRNGKLEMSACHLSN------------KNAGPRAPTLSVIGDRSL-----------LFLDRCHCEGAPGSGVRALQGGIIAIGACEIKGSGQAGV 840
            ++L+ +E+SR  A +K+R LTGE W  ++DG+S+LPFWYN DTGEAIW+KP V+     +  ALE+ +  MPL  L R++ FL    DR+  S V   W   A   +F K V P +     LED       + ++  AL  + PGDTIE   GH+W     + VD  ++ VG   DP++VV+EL+G + W  A  G ++G+T+RRPK   +   S  +++V + GKL+M  C L N            K +  R   +++ G  S            L L  C      G+G++ + G +I I   EI+ +G  G+
Sbjct:   18 KQLYIREKSRLRANKKRRRLTGENWVTKVDGVSQLPFWYNEDTGEAIWEKPAVLNELASHETALEKKWIAMPLEPLRRIMQFLLPYPDRVQCSTVCKHWKAAATDISFVKHVIPVEMGALALEDSKLFHNHYRSIADALTVALPGDTIEFADGHYWVKEPGIKVDFPLRFVGHETDPTQVVIELSGVIDWHGAGGGWMEGITIRRPKIAASESSSHDILQVQKGGKLDMVHCVLDNGGCSGSVVRVRDKGSHCRWDDVAIRGSGSAEGAVVLDSEGDLELSECRITDNQGNGIKCMGGSVIRIEKSEIERNGGIGL 333          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A7S4NI31_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NI31_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.080e-45
Identity = 97/236 (41.10%), Postives = 138/236 (58.47%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEGANHDTFKKKV----------PHDQLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPNSGPLVE---VIRNGKLEMSACHLSNK 672
            R+LF +E+SR  A + +R LTGE WE RID +SK PFW+N DTGEA WDKPLV+LG E  A A E+ +  + +  LV V+ +L    DRM  S V   W   A   +F K V            D+L    + T+ +AL ++ PGDTIELG GH+W     L +   ++++GD  DPS VV+EL+G + + +  G ++GVTLRRP+   ++    E   V+  GK +M+ C L N+
Sbjct: 1067 RQLFAREKSRLRAEKLRRKLTGENWETRIDALSKSPFWFNTDTGEARWDKPLVLLGLEADALAHEKKWNALSMKPLVHVMEYLVPFPDRMRCSAVCRQWRSAATDISFVKHVFPVEMGALALDPDKLGQNHYRTMAEALGEALPGDTIELGDGHYWVNDPGLHIKTPLRLIGDENDPSHVVIELSGSIDFDSVCGWMEGVTLRRPRIVSDTKQSCESLRVLNGGKFDMAHCVLDNE 1302          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A7S1FSH4_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSH4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.060e-42
Identity = 102/317 (32.18%), Postives = 159/317 (50.16%), Query Frame = 1
Query:    1 HRKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEGANHDTFKKKV-PHD--------QLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPNSGPLVEVIRNGKLEMSACHLSNKNAGPRAPTLSV--------------------------IGDRSLLFLDRCHCEGAPGSGVRALQGGIIAIGACEIKGSGQAGVEI 846
            H +L+  E+ R  A +K+R LTG+ WE  IDG ++ PFW N DTGEAIWD P V+L  E    A    +  + +  L+ ++ +L    DR+    VS  W+  A+H++F + V P +        +L+   + T+ +A++D+ PGDT+ELG GH+W +R  L +D  +++VGD RDP+ VVLEL+G V W    G I+GVT RRP+        + +++NG   +   H    NAG     L                            I D S L L +C       +G+R+    ++ +  C  K +   G+E+
Sbjct:  358 HCRLYACEKMRLKADKKRRRLTGKNWEVLIDGKTQKPFWQNSDTGEAIWDTPKVILELEAEKLARTHNWNALMMKPLLNIMGYLVPFPDRINCGKVSKQWATAAHHNSFVRHVYPVEMGPAIESLKLDAAHYRTIDEAMQDALPGDTLELGDGHYW-LRDGLAIDFPLRIVGDERDPTNVVLELSGSVEWRGGGGWIEGVTFRRPRVSILDQSSIFLLKNGSCNI--VHSIMNNAGSMGTVLKCHRSTLKMLDVTLRGEGSTRVSSCGVDIEDHSNLTLTKCRINNNSCTGLRSSYFSVVDLSECTFKRNSTFGLEL 671          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A7S4EMN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMN4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.890e-39
Identity = 90/258 (34.88%), Postives = 136/258 (52.71%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEG------------------ANHDTFKKKVPHDQLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPN----SGPLVEVIRNGKLEMSACHLSNKNAGPRAPTLSVIG 711
            R L+ +E+ R  + + +R +TGE W  ++DG++K PFWYN +TGEA WD PLVV        A    +G +P+ LL  ++ FL    +R   S V   W                     AN D  K+   H        AT++ AL ++ PGDTIELG GH+W     ++VDK ++ VGD  +P+ VV+E++G V+W+A  G I+G+T RRPK        S P++E+   G+++M   H    N G   P +++ G
Sbjct: 1099 RNLYRREKIRLRSEKLRRKITGELWSQKVDGLTKKPFWYNEETGEATWDTPLVVAELRAEDLAAREGWGHLPIKLLTHIMGFLFPFPERQRCSAVCRQWRIAVSDIRFVVHVYPAEMGALANRDPSKRHYNH-------HATIEDALANALPGDTIELGDGHYWVNDPGIIVDKPLRFVGDENNPANVVIEMSGSVQWTAKGGWIEGITFRRPKMSSGKTLPSFPMLEIGGAGRMDM--IHSVFDNDGSTGPVVNISG 1347          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: K0RY45_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RY45_THAOC)

HSP 1 Score: 123 bits (308), Expect = 2.050e-27
Identity = 83/263 (31.56%), Postives = 132/263 (50.19%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLT-FQHDRMAASMVSSLWSEGANHDTFKKKVPHDQL----------EDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCPNS---GPLVEVIRNGKLEMSACHLSNKNAGPRAPTLSVIGDRSLLFLDRCHCE 750
            R+L+ +E++R  +    R LTG  W  +++  SK  +WYN DTGEA+W KP V++  E    A    +  +P  +L+ +  +L  F     AA+     W   AN  +F   V   +L          +   F T+ +A+E + PGDTIE+G G+++ V+  L+VDK VK+VGD  D  +V LE+ G + W A  G ++G+TL RP           ++ V  N +L+M  C + N           ++G+ +     RCH E
Sbjct:  689 RQLYIREKARLRSEIMIRKLTGRNWTTKVEDRSKRVYWYNTDTGEALWGKPQVLIDLEAEENARANGWSALPPNILIDIFDYLVPFPERTAAAAGTCRGWRLAANDPSFVLHVWPVELGALIMNESKSKKKQFRTVAEAVESALPGDTIEMGDGNYY-VKSGLVVDKPVKLVGD-EDNLKVNLEVGGTIEWRARGGYLEGLTLHRPSMVSGKTEQNDMLAVAPNCRLDMFRCVVDNAGG---IGNCVLVGEGA-----RCHSE 941          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: W4GAH8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAH8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.200e-25
Identity = 105/331 (31.72%), Postives = 165/331 (49.85%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLWSEGANHDTFKKKVPHDQLEDGSFATLKKALEDSGPGDTIELGPGHHWEVRGDLLVDKVVKVVGD--TRDPSRV-----VLELTGEVRWSATRGVIQGVTLRRPKPCPNSGPLVEVIRNGKLEMSACH----LSNKNAGPRAPTLSVIGDRSLLFLDRCHCEGAPGSGVRALQGGIIAIGACEIKGSGQAGVEIGPGAEAVVNDSYIFWNTGAGVVAAGGGAVSLVHNDCSHN 963
            ++L+ +ERS   + +++R LTG AW  +    S LPF+YN DT EAIWD+PLV +  + +A A+   YGG+ +P L+ +L F T + DRMA S V+  W+  A H +F K+V H      +  +L  ALE     DT+  G G H  +   + +   V+  G   TR  +       V E++G V W A  G I  +T++ P    +     +  RN  L +++      L ++  G         G  +L+ +D      A GSGV  +QGG +AI AC + G G+ G+ +  GA  +V  S+   N   GV   GG  ++++  +   N
Sbjct: 1363 KRLYVRERSHVKSEKRRRALTGAAWMPKTCSRSNLPFYYNTDTHEAIWDRPLVWVTNDEHAHAVTVGYGGLSIPTLLHLLGFATAK-DRMA-SCVNKQWTVAARHPSFHKRV-HSTDSVAAVQSLLSALEAC---DTVAFGSGVH-SMPTAVHIRCPVRFTGPPLTRGSTCTLEFSPVNEMSGLV-WHAKAGEISNLTVQIPTSSSSPNMSTKSRRNVVLTVASDSNLTVLDSRILGGDVAVAVQGGTATLVDVDIAD---AVGSGV-VVQGGFVAIVACRVSGHGRCGLAMVHGA-GIVRRSWFALNGRYGVRLLGGVQMAMLDTNSFEN 1680          
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Match: A0A7S2VEB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEB1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.020e-25
Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 1
Query:    4 RKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWDKPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDR-MAASMVSSLWSEGANHDTFKKKV----------PHDQLEDGSFATLKKALEDSGPGDTIELGPGHHW 441
            R L+ +E SR  AA+K+R LTGE WE R+D      FWYN DTGEAIWDKP ++L  E Y  A ER +  +P+  LV ++SFL    +R + A+ V   W + A+  +F   V             ++E   + TL  A++ + PGDTIELG GH+W
Sbjct:  633 RNLYQREHSRVKAAKKRRALTGENWETRVDARIHKNFWYNVDTGEAIWDKPRLLLELEEYQIADERKWSALPIHPLVHIMSFLQPHPERALGAAAVCQQWRQAASDPSFVIHVYPVEMGAYTRDEKKMEYNHYRTLPAAIQAAQPGDTIELGDGHYW 789          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE5.240e-6435.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI2.470e-5539.79Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A7S3V8R8_9STRA1.280e-4533.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UQZ8_9STRA2.380e-4534.81Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4NI31_9STRA4.080e-4541.10Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1FSH4_9STRA2.060e-4232.18Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A7S4EMN4_9STRA2.890e-3934.88Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
K0RY45_THAOC2.050e-2731.56Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
W4GAH8_9STRA1.200e-2531.72Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2VEB1_9STRA8.020e-2541.40Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10018contigD-mesarthrocarpus_Contig10018:49..2942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTP0
PFAMsBeta_helix,HSA,Helicase_C,Myb_DNA-bind_6,Myb_DNA-binding,SNF2_N
Model size972
Max annot lvl2759|Eukaryota
KEGG koko:K11320
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.04e-56
EggNOG OGsCOG0553@1|root,KOG0391@2759|Eukaryota
Ec32 ortholog descriptionPectin lyase fold protein
Ec32 orthologEc-11_001655.1
Descriptionhelicase activity
Cds size972
COG categoryKL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789147.625596-CDS-D-mesarthrocarpus_Contig10018:48..3751680789147.625596-CDS-D-mesarthrocarpus_Contig10018:48..375Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10018 49..375 -
1680789147.6399412-CDS-D-mesarthrocarpus_Contig10018:736..9311680789147.6399412-CDS-D-mesarthrocarpus_Contig10018:736..931Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10018 737..931 -
1680789147.6506782-CDS-D-mesarthrocarpus_Contig10018:1235..13401680789147.6506782-CDS-D-mesarthrocarpus_Contig10018:1235..1340Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10018 1236..1340 -
1680789147.660756-CDS-D-mesarthrocarpus_Contig10018:1878..20901680789147.660756-CDS-D-mesarthrocarpus_Contig10018:1878..2090Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10018 1879..2090 -
1680789147.6748433-CDS-D-mesarthrocarpus_Contig10018:2809..29421680789147.6748433-CDS-D-mesarthrocarpus_Contig10018:2809..2942Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10018 2810..2942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10018.1.1prot_D-mesarthrocarpus_Contig10018.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10018 49..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10018.1.1

>prot_D-mesarthrocarpus_Contig10018.1.1 ID=prot_D-mesarthrocarpus_Contig10018.1.1|Name=mRNA_D-mesarthrocarpus_Contig10018.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=324bp
HRKLFCQERSRSVAARKKRLLTGEAWENRIDGISKLPFWYNRDTGEAIWD
KPLVVLGRELYARALERLYGGMPLPLLVRVLSFLTFQHDRMAASMVSSLW
SEGANHDTFKKKVPHDQLEDGSFATLKKALEDSGPGDTIELGPGHHWEVR
GDLLVDKVVKVVGDTRDPSRVVLELTGEVRWSATRGVIQGVTLRRPKPCP
NSGPLVEVIRNGKLEMSACHLSNKNAGPRAPTLSVIGDRSLLFLDRCHCE
GAPGSGVRALQGGIIAIGACEIKGSGQAGVEIGPGAEAVVNDSYIFWNTG
AGVVAAGGGAVSLVHNDCSHNALG
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mRNA from alignment at D-mesarthrocarpus_Contig10018:49..2942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10018.1.1 ID=mRNA_D-mesarthrocarpus_Contig10018.1.1|Name=mRNA_D-mesarthrocarpus_Contig10018.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2894bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10018:49..2942- (Discosporangium mesarthrocarpum MT17_79)
CATCGAAAGCTATTCTGTCAGGAGAGATCACGCTCAGTTGCAGCAAGGAA GAAACGCCTCCTGACAGGAGAGGCGTGGGAAAATCGGATAGACGGGATAT CCAAGCTTCCATTCTGGTACAACCGGGACACCGGTAAGGGAAGAATAATA GCAATAGTGTTAATATTGATAGTTGTAATAGTGATGATGATGATAATAAT AATAATATTGGTATCTAAACTTTGTCTTTCAGTGCATTCTACTTTAGACT TCAGGATACTTTACTGTAACAGAGGGTTAGGGTTAAGGTAGGGGGTTTTG AGGGGCTTTGAAGCACTCTCTGTCCTTTTTCTTCTCCTTTATTTCTTTTC TGGAGAACAGACCCGACCTGCCGCGCTGTCTCCGCCTAACCCTAGGGATC AAGTTACACAGAGAAGGGGCACACCTGTAACCAGGATAGTCATGGAGTGT AGACCACGCTGTGAAGTCGATGCTCTGTACAAAAAGAACTCTAAGGATGA TGGGCACATCCGTCACCAGGGTAGTCGTGGAGTGTAGACCGCGCTGTGCA GTCGATGCTCTGTACAAAAAGAACTCTAAGGATGATGTTTCTGTCATTTG CGGGCAGGCACTTCATTGGCACTCCCTGACTCCTACCGAACCAAGGAGCT GCCTACTTACCTTTCTCTCAAGCTCTGTTGTCTAGCTTCCTTCACATGTG CTCACCTTCAAGTTGCACCTTGGCTGCCTCACCATGGCCTGTTGCCTTCC CCCAGCTTCCTGCCCCCAATCACCCCCCAACCCCCACCCTAAACCTGTAC ATTTCTCTCAGTCTCCTCTCCACTTACATCCGCTCTGTACATGCACTGGC AGGCGAGGCCATCTGGGACAAGCCATTGGTGGTGTTGGGGAGAGAGCTGT ACGCCAGAGCTCTGGAGCGGCTGTACGGGGGCATGCCCCTACCGCTACTT GTACGAGTCTTATCCTTCCTCACGTTCCAGCACGACCGCATGGCAGCCTC CATGGTCAGCTCGCTCTGGTCAGAGGGGGCCAACCACGACACCTTCAAGA AGAAGGTGCCCCATGTGCTCGTTTGTTTTGGAAGAACTGATTTTTTTCAC CATACTGATACGCTGATGCAGTGATGTGCTATTCTGTGTGTGTTGATATA GTTCTCAATGGTTGATTAACCGCATGGATATACAGTAAAGCGGTCGATAG ACTGTCTTGCCCTCCACGTGGAAATGCTGCTTTGACAAGCAAGAAAAAAA AAGTCAGGGCTAAAATCCGCACTTACCCTAACCCTAACCCTAACCCCTAA GCCATGATAAACATCTCTCAATACTATATGTGTGTGTCCCTCTCTCTATT CCTTACCCTAACCCTAGCCCCTAAGTCATGATTAACATCTCTCAATATTA TATATGTACCCCCATCTCTCTTCCTAACCCTAACCCTAACCCAAAGGTGA TGCCTGTGGAGTCTCGTACTGGACAACGAAGGAGGGTGGCCTCTAGGCTA GCAAAACCTGGTGACCCAGGTGGTACGGGCTTGAGGGCCCAGGGGAATTC CAAGGAGACCAAGCCTGACCCCCCCAGCACCATCGCCGATGGGGGAGAGG AGGACCAACTGGAGGATGGGTCATTTGCGACGCTGAAGAAGGCCCTTGAG GACTCAGGGCCGGGGGACACCATTGAGCTTGGACCAGGGCACCACTGGGA GGTTAGGGTTGGGAGCAGGGGTAGGATTGTGGGGCCAGGGGGCCACTGGT GGCAAAGCATTGGTTTACGGTGTCAGGGTTAGGGTTAGGATAACGATGCC ATGCAAGGAAAGAAAGAATTGCCAGGTACAGTCTCTTGACTACCTGGGTG GATGAACGGCTTGACAAATAACGCCTTAGCAACTCACCGAAGACCCATCT AGATTATCTGCCTCTTGAGGTGCCTCTTGAGGTCACTGGGCCCTAACCCC ACACACCCCCACATCGAACCCCAAACCTGACCCGTACCGTGAATGACAAA AATCGGTGCAGGGGGACCTATTGGTGGACAAGGTGGTGAAGGTGGTGGGG GATACGCGCGACCCTTCCAGGGTGGTCCTGGAGCTCACAGGGGAGGTGCG TTGGTCTGCAACCAGGGGTGTGATTCAGGGGGTCACTCTGCGGAGGCCAA AGCCTTGTCCCAACAGTGGACCATTGGTGGAGGTCATCAGGAATGGGAAG CTGGAGGTGAGGGGAGGGGAGGTGACCACCCTTTCCATGAAGCACTATTA GCCCTTAACCCTTGCCCTGAAGGTTATTCTGCGGGGAAGGAGTGGATGGG AAGGGGGGGGCAAGGAGATACATGAGCCCTTTAAATATATGTGTTTGTAC AACATGCATGTGCCTGCACATTGGTGACTGGGAAGCTCAAAGACCAGTCT TTGATCGTTCCTCCAGCTGTCAATGTATCAGTACAAGCGTTTCAGTGCAT CAGTATTTATTTTCAGTATTCCCTTGAGTGTGTCGATGTGTCGGTGTTTA TTTTCGGGGTTTAGGTCGACAACACACCCACCCCTGCGACCACCCACCAC CCCCTCATGCTCGTCAGATGTCAGCATGTCATCTAAGCAACAAGAATGCT GGACCAAGAGCCCCCACCCTCAGTGTGATCGGCGACCGGTCCCTCCTCTT CCTCGACCGATGCCACTGTGAGGGGGCCCCCGGATCAGGTGTGAGGGCAC TCCAGGGGGGCATCATAGCGATCGGAGCCTGCGAAATCAAGGGCTCTGGG CAGGCAGGGGTGGAGATTGGCCCTGGGGCCGAGGCAGTGGTGAATGACAG CTACATTTTTTGGAACACGGGGGCGGGGGTGGTGGCAGCTGGAGGAGGGG CGGTGTCATTGGTGCACAACGACTGCTCCCACAATGCCCTAGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10018:49..2942-

>mRNA_D-mesarthrocarpus_Contig10018.1.1 ID=mRNA_D-mesarthrocarpus_Contig10018.1.1|Name=mRNA_D-mesarthrocarpus_Contig10018.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=972bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10018:49..2942- (Discosporangium mesarthrocarpum MT17_79)
CATCGAAAGCTATTCTGTCAGGAGAGATCACGCTCAGTTGCAGCAAGGAA
GAAACGCCTCCTGACAGGAGAGGCGTGGGAAAATCGGATAGACGGGATAT
CCAAGCTTCCATTCTGGTACAACCGGGACACCGGCGAGGCCATCTGGGAC
AAGCCATTGGTGGTGTTGGGGAGAGAGCTGTACGCCAGAGCTCTGGAGCG
GCTGTACGGGGGCATGCCCCTACCGCTACTTGTACGAGTCTTATCCTTCC
TCACGTTCCAGCACGACCGCATGGCAGCCTCCATGGTCAGCTCGCTCTGG
TCAGAGGGGGCCAACCACGACACCTTCAAGAAGAAGGTGCCCCATGACCA
ACTGGAGGATGGGTCATTTGCGACGCTGAAGAAGGCCCTTGAGGACTCAG
GGCCGGGGGACACCATTGAGCTTGGACCAGGGCACCACTGGGAGGTTAGG
GGGGACCTATTGGTGGACAAGGTGGTGAAGGTGGTGGGGGATACGCGCGA
CCCTTCCAGGGTGGTCCTGGAGCTCACAGGGGAGGTGCGTTGGTCTGCAA
CCAGGGGTGTGATTCAGGGGGTCACTCTGCGGAGGCCAAAGCCTTGTCCC
AACAGTGGACCATTGGTGGAGGTCATCAGGAATGGGAAGCTGGAGATGTC
AGCATGTCATCTAAGCAACAAGAATGCTGGACCAAGAGCCCCCACCCTCA
GTGTGATCGGCGACCGGTCCCTCCTCTTCCTCGACCGATGCCACTGTGAG
GGGGCCCCCGGATCAGGTGTGAGGGCACTCCAGGGGGGCATCATAGCGAT
CGGAGCCTGCGAAATCAAGGGCTCTGGGCAGGCAGGGGTGGAGATTGGCC
CTGGGGCCGAGGCAGTGGTGAATGACAGCTACATTTTTTGGAACACGGGG
GCGGGGGTGGTGGCAGCTGGAGGAGGGGCGGTGTCATTGGTGCACAACGA
CTGCTCCCACAATGCCCTAGGG
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