prot_D-mesarthrocarpus_Contig1117.2.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig1117.2.1
Unique Nameprot_D-mesarthrocarpus_Contig1117.2.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length148
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.890e-53
Identity = 96/146 (65.75%), Postives = 115/146 (78.77%), Query Frame = 0
Query:    2 EENANTLQFGAEF--EAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQFEAFHDGEVVKLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQAQSQFSS 145
            EENAN LQFG E   + +SCLSNAEV+VVLEKQ+  YE KDINVTPAF+KTM+Y KR+GG G + K M AT++LRE L QFE FH+GE ++L QFE+ Q+ANLMQADSEVEE +ALIPSL  R  EED+ENILAIV+K   S+  S
Sbjct:    7 EENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVK-MTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.290e-28
Identity = 69/145 (47.59%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQ--FEAFHDGEVV--KLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQAQSQF 143
            E+A  L  G +F   +CLSNAEVAV+LEKQK  YE ++  +T  F KT +Y +R+ G+ D      + T+LRE L    F+   DGE V  +LE+FE+A L+NL     EVEEA+ALIPSL  RF E++IE IL IV + A   F
Sbjct:   12 EDAAELNLGGDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSRTAARMF 154          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 7.150e-27
Identity = 68/145 (46.90%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQ--FEAFHDGEVV--KLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQAQSQF 143
            E+A  L  G +F   +CLSNAEVAV+LEKQK  YE ++  +T  F KT +Y +R+ G+ D      + T+LRE L    F+   +GE V  +LE+FE+A L+NL     EVEEA+ALIPSL  RF E++IE IL IV + A   F
Sbjct:   12 EDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSRTAARMF 154          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 7.150e-27
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQ--FEAFHDGEV--VKLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQA 139
            E+A  L  G +F   +CLSNAEVAV+LEKQK  YE ++  +T  F KT +Y +R+ G+ D      + T+LRE L    F+   DG+V  V+LE+FE+A L+NL     EVEE++AL+PSL  RF E++IE IL IV + A
Sbjct:   12 EDAAELNLGDDFRHETCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNP--EEVEESVALVPSLQKRFAEDEIEEILGIVSRTA 150          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.830e-26
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQFEAFHDGEVVKLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQK 137
            EN NTL+FG  FE + CL++ EV  +L     T +  D+  T A+ KT+ + KR+G + D K  +  TT+LR+ L  FE   D     L  +E+  L NLMQADS V+EAIALIPSLS +F EEDIE +L I++K
Sbjct:   10 ENVNTLKFGPGFEEIQCLTHTEVYQIL-----TSKTHDVQRTQAYTKTIEHVKRFGTADDEKHAI--TTELRQALETFERDTDQGTETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRK 137          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.150e-25
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQ--FEAFHDGEVV--KLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQA 139
            E+A  L  G +F   +CLSNAEVAV+LEKQK+ YE ++  +T  F KT +Y +R+ G+ D      + T+LRE L    F    D  VV  +LE+FE++ L+NL     EVEEA++LIPSLS R+ EE+IE IL IV ++A
Sbjct:   12 EDAAELNLGEDFRDETCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNP--EEVEEAVSLIPSLSKRYAEEEIEEILGIVSRKA 150          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC)

HSP 1 Score: 102 bits (253), Expect = 1.020e-24
Identity = 62/142 (43.66%), Postives = 88/142 (61.97%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQFEAFHDGE-------VVKLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQK 137
            E+A  L  G +F+  +CLSNAEVAV+LEKQK  YE ++  +T  F KT +Y +R+ G+ D      + T+LRE L  +E   +          ++LE+FE+A L+NL     E EEA+ALIPSL  RF E+DIE IL+I+ +
Sbjct:   13 EDAAELILGEDFQGETCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNLNP--EEPEEAMALIPSLQKRFTEDDIEEILSIIAR 152          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.160e-24
Identity = 62/142 (43.66%), Postives = 87/142 (61.27%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQFEAFHDGE-------VVKLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQK 137
            E+A  L  G +F+  +CLSNAEVAV+LEKQK  YE  +  +T  F KT +Y +R+ G+ D      + T+LRE L  +E   +          V+LE+FE+A L+NL     E EEA+ALIPSL+ +F EEDI+ IL I+ +
Sbjct:   15 EDAAELNLGEDFQQETCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNP--EEPEEAMALIPSLNKKFTEEDIDEILQIIAR 154          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A484E841_BRELC (RPOL4c domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E841_BRELC)

HSP 1 Score: 100 bits (249), Expect = 5.040e-24
Identity = 67/157 (42.68%), Postives = 91/157 (57.96%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQ--------------FEAFHDGEVV--KLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQAQSQF 143
            E+A  L  G +F   +CLSNAEVAV+LEKQK  YE ++  +T  F KT +YA+R+ G+ D      + T+LRE +                F+   D  +V  +LE+FE+A L+NL     EVEEA+ALIPSL  RF E++IE IL IV + A   F
Sbjct:   12 EDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYAQRFSGTKDPVANQASVTELREYVANSSSIVHKVALMSLVFQREEDSGMVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSRTAARMF 166          
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.080e-23
Identity = 69/144 (47.92%), Postives = 92/144 (63.89%), Query Frame = 0
Query:    3 ENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKTMAYAKRYGGSGDAKKLMMATTQLREDLTQ--FEAFHDGEVV--KLEQFEMAQLANLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQK-QAQS 141
            E+A  L  G +F   +CLSNAEVAV+LEKQK  YE ++  +T  F KT +Y +R+ G+ D      + T+LRE L    F+   +GE V  +LE+FE+A L+NL     EVEEA+ALIPSL  RF E++IE IL IV   QAQ+
Sbjct:   12 EDAAELNLGDDFRNETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSPVQAQT 153          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1117.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT81_ECTSI1.890e-5365.75RPOL4c domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A3M6VV57_9STRA6.290e-2847.59RPOL4c domain-containing protein n=3 Tax=Peronospo... [more]
H3GHD4_PHYRM7.150e-2746.90RPOL4c domain-containing protein n=23 Tax=Oomycota... [more]
A0A8K1FR52_PYTOL7.150e-2746.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835YSR6_9STRA2.830e-2646.67HRDC-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
F0W0U0_9STRA1.150e-2546.81Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug... [more]
A0A067CZ22_SAPPC1.020e-2443.66RPOL4c domain-containing protein n=4 Tax=Saprolegn... [more]
A0A024TL56_9STRA2.160e-2443.66RPOL4c domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A484E841_BRELC5.040e-2442.68RPOL4c domain-containing protein n=1 Tax=Bremia la... [more]
A0A3F2S3S1_9STRA1.080e-2347.92Helicase C-terminal domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 12..142
e-value: 1.8E-5
score: 31.2
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 2..143
e-value: 4.8E-31
score: 109.3
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 19..137
e-value: 1.6E-12
score: 47.8
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 2..138
IPR045222DNA-directed RNA polymerase II subunit Rpb4-likePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 2..138
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 1..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1117contigD-mesarthrocarpus_Contig1117:5807..7959 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1117.2.1mRNA_D-mesarthrocarpus_Contig1117.2.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig1117 5807..7962 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig1117.2.1 ID=prot_D-mesarthrocarpus_Contig1117.2.1|Name=mRNA_D-mesarthrocarpus_Contig1117.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=148bp
MEENANTLQFGAEFEAVSCLSNAEVAVVLEKQKETYEMKDINVTPAFAKT
MAYAKRYGGSGDAKKLMMATTQLREDLTQFEAFHDGEVVKLEQFEMAQLA
NLMQADSEVEEAIALIPSLSTRFNEEDIENILAIVQKQAQSQFSSFN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR038324Rpb4/RPC9_sf
IPR005574Rpb4/RPC9
IPR045222Rpb4-like
IPR010997HRDC-like_sf