Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot
Match:
D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI)
HSP 1 Score: 66.6 bits (161), Expect = 2.260e-8
Identity = 66/221 (29.86%), Postives = 91/221 (41.18%), Query Frame = 1
Query: 10 PWYYGAPDITLHYPQEETGRGGVIFDAMVVLKRALMANVNHDTDPAGLISLLEDVLTKFFGLKGLEGRGQREETCARGGLAAGSPVKQARTLPPPXXXXLPGIPCLSNGEGGVGXXXXXXXHQGGPSSATS-AAAGSPKPKEHNQGQVRVLGYGGGQENSPVAEGTTPLPSCQEIFFSTTDFYLFLRVHYLLVDRLTVARRLCREASASEEAELEDHQRAI 669
PWY A +TL YPQE G G+ D M +L L + D + + D+L FF L E + A GG G S+G+ G P S T+ A +P P QG V ++S + PLP QE+ F+TTDFYL LR+H+LL +RL A++LC EA S + + Q +
Sbjct: 864 PWYMFA-HLTLKYPQE--GTPGIHKDIMELLTHTLARRPPSEDDVRQASTTVADLLPAFFSLGRSNQAANGEGSTALGGN---------------------GGCAQSSGDERKGDRRRS------PQSVTNEGTALTPDP----QGCVPA-------KDSEGRASSNPLPQGQEVMFTTTDFYLVLRMHHLLAERLAEAKKLCSEAGLSRQTVVASPQEVL 1043
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10224.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.26e-8 / Id = 29.86 Sequence D7G470_ECTSI
Match Name E-value Identity Description
D7G470_ECTSI 2.260e-8 29.86 HDAC_interact domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0
Start 0
Seed ortholog 2880.D7G470
PFAMs PAH,Sin3_corepress,Sin3a_C
Model size 984
Max annot lvl 2759|Eukaryota
KEGG ko ko:K11644
KEGG Pathway ko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting category other localisation
Exons 3
Evalue 3.71e-09
EggNOG OGs COG5602@1|root,KOG4204@2759|Eukaryota
Description histone deacetylation
Cds size 981
COG category B
BRITE ko00000,ko00001,ko03036
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789165.7168548-CDS-D-mesarthrocarpus_Contig10224:252..570 1680789165.7168548-CDS-D-mesarthrocarpus_Contig10224:252..570 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10224 253..570 -
1680789165.7303975-CDS-D-mesarthrocarpus_Contig10224:1333..1723 1680789165.7303975-CDS-D-mesarthrocarpus_Contig10224:1333..1723 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10224 1334..1723 -
1680789165.7458785-CDS-D-mesarthrocarpus_Contig10224:2488..2761 1680789165.7458785-CDS-D-mesarthrocarpus_Contig10224:2488..2761 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10224 2489..2761 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10224.1.1
>prot_D-mesarthrocarpus_Contig10224.1.1 ID=prot_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=327bp
SQPPWYYGAPDITLHYPQEETGRGGVIFDAMVVLKRALMANVNHDTDPAG LISLLEDVLTKFFGLKGLEGRGQREETCARGGLAAGSPVKQARTLPPPPP PPLPGIPCLSNGEGGVGGGEGMGGHQGGPSSATSAAAGSPKPKEHNQGQV RVLGYGGGQENSPVAEGTTPLPSCQEIFFSTTDFYLFLRVHYLLVDRLTV ARRLCREASASEEAELEDHQRAINDFKSRTEDIAGLTGVLGKEGSAPTGM ETGEGPSTRAEADTGAGTGIGTGGEAHTGAGIGAAPLNGEGGQDAYESYL LVLNSWLEGSIGSDQYEESVIAIMGNK back to top mRNA from alignment at D-mesarthrocarpus_Contig10224:252..2761-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10224.1.1 ID=mRNA_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2510bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:252..2761- (Discosporangium mesarthrocarpum MT17_79)AGTCAACCCCCATGGTACTACGGGGCGCCCGATATCACGCTGCACTACCC
ACAAGAGGAGACAGGGAGGGGGGGTGTTATATTTGATGCCATGGTGGTGC
TGAAGAGGGCGCTCATGGCAAACGTAAATCACGACACCGACCCAGCAGGG
CTGATCTCTCTCCTGGAGGATGTGCTGACTAAATTTTTTGGCCTTAAGGG
GCTCGAGGGCCGGGGTCAGAGGGAAGAGACGTGTGCAAGGGGTGGCCTTG
CAGCTGGTAGTCCTGTGAAGCAG GTGGTATTAGCAAGTATAGGCTTGGGC
CGTCTGTTAAATAAGTGTTTTTTTGGCTCTCATTTTTTCTTTATTTTGCC
CTTGCCTCTTGTTTGCGCTTTGTGTGTTGAATAGTTCAGTTCCTCCTACT
CCTGCAATATGCTTCATATAGGATACCCCTTCAATATACTTCATATAGTG
TACACAAGCTTCGAAGTGCTCGGTGCAGTGTTCCTTGCACAGCTATGTGC
ACAGGACAATGTATCATAGAGGCGTGAGAGTAAGTTTGGCTGTGCCAATA
TAAAGAGAAGGGGGAAACCTTAACCCTGAGATTGATCCATTCCTGGGGCA
GCTGCAGTTCGCCCTAACCTTAAGAGTGGAGACCTACCTCACAAGAAGGA
GAGAGACAGCTGAACCGTAAAGATCAGTGGATATGCTCCCCCCCCATTAA
CCATTGACCCTTGCCTCTGTGATGAGTATCGGATGAGCAGCATCATGTGG
TGTGCATTCCCATTGCAGGAACATCTTGGGCCTCATCAGGCCCCCCCAGG
ATCTCCACACTGTGCTGCTTCCCAGCCCTCAAAAAATACCCATCCCTGCC
TGTTTGTAGCTTGCCCCTCCCTCAATGTTTTTTCCCCTTTACCTCTTGTT
GTAATCATGAACGAGAACCCTAACCCTAACCCTTTGATTACAACGAGTGA
GTATTCATTGATTGTCTGCTTTCTTTAGAGCATCAGTGCACATGATTTAT
TCAATCGATCAATTCCCTTTCTTTCCTTGGCAAAACAGGCAAGGACCCTC
CCGCCCCCACCCCCACCCCCACTCCCCGGCATCCCCTGTCTGAGCAATGG
TGAGGGTGGTGTTGGGGGTGGGGAGGGTATGGGTGGCCACCAGGGAGGAC
CCAGCAGTGCCACCAGTGCAGCTGCTGGGAGCCCAAAACCCAAGGAGCAT
AACCAGGGGCAGGTGCGAGTGCTGGGATATGGGGGAGGGCAAGAAAACAG
CCCCGTAGCAGAGGGCACAACCCCCCTACCCAGTTGTCAGGAGATATTCT
TCTCCACAACGGACTTTTACCTGTTCTTGAGGGTGCACTACCTGCTGGTG
GACAGGCTAACGGTGGCCAGGAGGCTCTGCAGGGAGGCATCCGCTTCCGA
GGAGGCTGAGCTGGAGGACCACCAAAGG GTTAGGGGAGGGATTAGCTCAG
GGTTAGGGTCAGGCTAACAGGGATGGGGATGGGGTGGGATTACCTCAGGG
TTAGGGTCAGGTGTGATGATGTTGCGGGTTAGGGTTGGGAGGGGGGGGGG
GGAGGGGGGGGGGGTCAGCGACCAGCTTATTTTTTTTCGTCCTTCTGCGG
GGGTGGTGTCCTAGGGTTTGGGTCAGGGTTTTCCACTGTTTGGCTGGGGG
CCGGGAGGGGGGGAGGGGGTTCTGTCAGCTGGCTGGTCCACATCGTTTAG
GGTTAGGGTTAGCTCAGGGCATGGGAAAGTGGGGTTAGGGTTTGGGCTTA
AGGGCCTTAGGCTTGTTCTCTGGAAGTAGGGTCAGGGTTAGGGCTTAGGG
GCTTGTGTTTCTTTCTCAGGAGGAAGAAAGAGCAACATGCCACCACATCC
CATTCCATTCTATTCCATTCCGTGCGCTCCTGTGATTCGCTCAACGCTAA
CCCTAGCCCCAACCCTAACCCTAGCCTCAACCCTGATCCTGACCCTTAAC
CCCTGACCCCATTTTGTTAGCGCTACTGTGCAGTCCTTCTATCTTCACGT
GTAAGTGCTTCCTTTGAAAAAGAATGCACTGTATTTCATTGCCTGTTAAC
AGGTTTTACCGAGAAAAAGAGCAAAACGATCGCAAAAACAAGCAAAACAA
AACAAAACAAGACAAAACAAGACAAAACTCCAAAAACAAGCAAAAAAAAA
CAAAGCAGTATAGAAACCAGAAAACGAAATCTCAACTGCAGGCAATCAAC
GACTTCAAGTCAAGAACAGAAGACATTGCTGGCTTAACAGGGGTCTTGGG
AAAGGAGGGCAGTGCCCCTACAGGCATGGAGACAGGGGAAGGACCGAGCA
CAAGGGCAGAGGCAGACACAGGGGCAGGCACGGGAATTGGGACAGGAGGA
GAAGCACACACAGGGGCAGGCATAGGGGCAGCACCTCTAAATGGTGAAGG
GGGACAGGATGCATACGAGAGTTACCTCCTGGTTCTGAACTCATGGTTGG
AGGGTTCCATTGGATCGGATCAGTACGAGGAGAGTGTCATTGCCATCATG
GGCAACAAG G back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10224:252..2761-
>mRNA_D-mesarthrocarpus_Contig10224.1.1 ID=mRNA_D-mesarthrocarpus_Contig10224.1.1|Name=mRNA_D-mesarthrocarpus_Contig10224.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=981bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:252..2761- (Discosporangium mesarthrocarpum MT17_79) AGTCAACCCCCATGGTACTACGGGGCGCCCGATATCACGCTGCACTACCC ACAAGAGGAGACAGGGAGGGGGGGTGTTATATTTGATGCCATGGTGGTGC TGAAGAGGGCGCTCATGGCAAACGTAAATCACGACACCGACCCAGCAGGG CTGATCTCTCTCCTGGAGGATGTGCTGACTAAATTTTTTGGCCTTAAGGG GCTCGAGGGCCGGGGTCAGAGGGAAGAGACGTGTGCAAGGGGTGGCCTTG CAGCTGGTAGTCCTGTGAAGCAGGCAAGGACCCTCCCGCCCCCACCCCCA CCCCCACTCCCCGGCATCCCCTGTCTGAGCAATGGTGAGGGTGGTGTTGG GGGTGGGGAGGGTATGGGTGGCCACCAGGGAGGACCCAGCAGTGCCACCA GTGCAGCTGCTGGGAGCCCAAAACCCAAGGAGCATAACCAGGGGCAGGTG CGAGTGCTGGGATATGGGGGAGGGCAAGAAAACAGCCCCGTAGCAGAGGG CACAACCCCCCTACCCAGTTGTCAGGAGATATTCTTCTCCACAACGGACT TTTACCTGTTCTTGAGGGTGCACTACCTGCTGGTGGACAGGCTAACGGTG GCCAGGAGGCTCTGCAGGGAGGCATCCGCTTCCGAGGAGGCTGAGCTGGA GGACCACCAAAGGGCAATCAACGACTTCAAGTCAAGAACAGAAGACATTG CTGGCTTAACAGGGGTCTTGGGAAAGGAGGGCAGTGCCCCTACAGGCATG GAGACAGGGGAAGGACCGAGCACAAGGGCAGAGGCAGACACAGGGGCAGG CACGGGAATTGGGACAGGAGGAGAAGCACACACAGGGGCAGGCATAGGGG CAGCACCTCTAAATGGTGAAGGGGGACAGGATGCATACGAGAGTTACCTC CTGGTTCTGAACTCATGGTTGGAGGGTTCCATTGGATCGGATCAGTACGA GGAGAGTGTCATTGCCATCATGGGCAACAAG back to top