mRNA_D-mesarthrocarpus_Contig995.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig995.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig995.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig995.4.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.610e-27
Identity = 82/199 (41.21%), Postives = 103/199 (51.76%), Query Frame = 1 
Query:    7 GLLGEYLEGSPLLSDLLALWDLPLRKSVVAIAAAHTEALAAVLDCLAGVVAKGISALGPGPDAAEPCGTRARVGGKAGPAGAXXXXXXGSVVEGAEATGLGLCRRIIRERFSQLCSQLGPTSNK------------------------DKGEGIEEDQVVATLRLLVGIVRFHRLAAKEVMGCFDFNSKAFLSLMSRKG 531
            GLLGEYL GSP L+DLL LWDL  RKS   +AAAHT++ AAVL+CLA V+                   R    G A   GA      G  +E   ATGLGLCRR+ R++   + +QL P++                            G    E+   ATLRLL  + RFHRLAAKE+ G F+F+ KAF+ L+SRKG
Sbjct:  122 GLLGEYLRGSPQLNDLLHLWDLDQRKSSPVLAAAHTDSFAAVLECLAAVL-------------------RHLAAGSA-VTGAVSAVARGEAIE---ATGLGLCRRLTRDKMDDIHAQLHPSAGSASXXXXXXXXXXXXXXXXTKAGAVQAGALTGEEVAAATLRLLTSVARFHRLAAKELAGVFNFSHKAFVKLVSRKG 297
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig995.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8A9_ECTSI2.610e-2741.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig995contigD-mesarthrocarpus_Contig995:10065..12484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8A9
Preferred nameURB1
PFAMsNopRA1,Npa1
Model size571
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
Exons4
Evalue4.28e-28
EggNOG OGsKOG1791@1|root,KOG1791@2759|Eukaryota
EC2.5.1.54,3.6.1.52
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size570
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791144.8578038-CDS-D-mesarthrocarpus_Contig995:10065..101801680791144.8578038-CDS-D-mesarthrocarpus_Contig995:10065..10180Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 10066..10180 -
1680791144.8696306-CDS-D-mesarthrocarpus_Contig995:10787..109251680791144.8696306-CDS-D-mesarthrocarpus_Contig995:10787..10925Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 10788..10925 -
1680791144.8885548-CDS-D-mesarthrocarpus_Contig995:11438..116711680791144.8885548-CDS-D-mesarthrocarpus_Contig995:11438..11671Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 11439..11671 -
1680791144.9054885-CDS-D-mesarthrocarpus_Contig995:12400..124841680791144.9054885-CDS-D-mesarthrocarpus_Contig995:12400..12484Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig995 12401..12484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig995.4.1prot_D-mesarthrocarpus_Contig995.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig995 10066..12484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig995.4.1

>prot_D-mesarthrocarpus_Contig995.4.1 ID=prot_D-mesarthrocarpus_Contig995.4.1|Name=mRNA_D-mesarthrocarpus_Contig995.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=190bp
VVGLLGEYLEGSPLLSDLLALWDLPLRKSVVAIAAAHTEALAAVLDCLAG
VVAKGISALGPGPDAAEPCGTRARVGGKAGPAGAGAGAGGGSVVEGAEAT
GLGLCRRIIRERFSQLCSQLGPTSNKDKGEGIEEDQVVATLRLLVGIVRF
HRLAAKEVMGCFDFNSKAFLSLMSRKGVGTLADGTVGGQE
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mRNA from alignment at D-mesarthrocarpus_Contig995:10065..12484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig995.4.1 ID=mRNA_D-mesarthrocarpus_Contig995.4.1|Name=mRNA_D-mesarthrocarpus_Contig995.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2420bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig995:10065..12484- (Discosporangium mesarthrocarpum MT17_79)
GTGGTGGGGCTGCTAGGGGAATACTTGGAGGGCTCTCCGCTGCTCAGCGA
CCTCCTAGCCTTGTGGGACCTCCCTCTGAGGAAGGTCAGAGCCATGTAGG
GGTAGGGTTAGGGTTGAGCTCCAATGTACTCAAACAATGTGGTACTGAAG
TATGGGGTAGGTTTGGGGCTTCTGCATTGAGGGCATATCGAGGCGTGGTG
GTGGGGTCAACAGCTCAGGCCATTACCTGGAGAGGGTGGGGGGGGACTGT
GGGGGAGGGTGTGGGTCTTTTGCAGTGGGTAGGGATAAGGTTAGGATTAG
GTGTTGAGTTGAGCAAGAAGGGCAGGGTTACAGTTAGGGTAAGGGTGGGG
GGGGGGAAATGAGGGTGCTGCTGTTGCCGGGCTAGGTTTAGAGTCGCCTG
GCTGAGGTTGGGGTATGATGAGCTGATCCAGAGGTTGTTTAAGCAGGTCG
GGTGCAGATAGGTGGTGTCCAACAGGTTCCCTCCTGAAAGGTTAGGGTTA
GGTTCAAGGGTGTAAAATTTTCATCTTTGTGATGATGCTCTTGAGCAGCA
CATCATTTTCTCTTATTTTTTCAATATCATAGATGTCGACAAGGCACAAG
GCACGCCAGACGACAACACAACGCAACGCAACATACCCCTGACAGAAGCC
ACCAGCACACACCCTTGTTTCCATGTCCAAACCCTTGCCCTTGCTCCCAA
TCCTAATCCCCAAGCCCTGATCCTTTACCTGAAAATCACCCTCCCCCCCC
CCCAAAAAAAAAACACAAACACGGCTTTGCTACAAAAAAAAAACACCATG
GGTGTGAGCACAGTCCGTGGTTGCGATAGCAGCAGCACACACTGAGGCAC
TGGCGGCGGTTTTGGACTGCCTCGCAGGCGTTGTCGCCAAGGGGATATCT
GCCCTGGGCCCAGGGCCCGACGCGGCGGAGCCCTGTGGGACACGGGCCAG
GGTAGGAGGGAAGGCAGGGCCAGCAGGGGCTGGGGCTGGGGCTGGGGGAG
GGTCTGTCGTGGAGGGAGCGGAAGCAACAGGGTTAGGGCTATGCAGGTGT
GGGGCAGGGCTGGCAAGCAAGGGAGCTCAGTTGATTATCGACGTGATGGA
GAGCCCAGTACAAAGTAGCTACAACAATTTAGTTTAGCTTGTTGCGTAAA
TCAACCATTACCCCCCTAATACTAACCCTAACAATAGCCCTAACCCTAAC
CCAGTACTTCGTGTTGCATCAGTATCATTACCCCCTGAGGTTAGGGTTAG
GGTTAGGGTTTACGTTGTGGTGGTTTCCAACCTCATGCTGCCAAGGATAC
CATTTTTACCTCTCATCCTTTTCTTTTTTGGCTGTGTGCAGTAGACCATA
ACCCTAACCGGTAGTGCTAACCCACGCAATCTTGAGCTTGTCTTGACGTC
AACCCTGACCTCATCATCATCTTATCATCCATAACCATAACCCTAGTGTT
ATGGTACGTCTCTTCGTTTACAAAAAGTCTTTAAATAAGCGTTGTAACAG
ACACCATGACCAACATCCCCCCCCCTGTCTTGTCTTTTTTTTTTCTTTTT
CACTGAAAGGAGGATTATCCGTGAGAGGTTTTCCCAACTCTGCTCACAGC
TTGGACCCACATCCAACAAGGACAAGGGGGAGGGGATTGAGGAGGACCAG
GTGGTGGCCACCCTACGCCTCTTGGTGGGGATCGTGAGGTTCCACAGGTG
ATCCTTAACCCGAACCATGCACTTAATTATAATTAACACAGGGATTTGTT
TACTGTACTCCGCTCAGCAACAACAGGGGAACAGGGGAACCGGGACCGTT
CCCGTTTTCTGTTGTGTATCATACTGTAGAGTATTTTTTGCATGCAGTCG
CTTAAAGCACTTACACCCATACAAGTTGGAATTACCAACTTGTTTACTGT
TGTTTAGTAGTGAGAGTTTCCCGAACCCTTGCCCTGACCCCAAGAGCTCT
GAGGCTCACTCTGAAATGAAGTTTAGCTTATTTAATTTCTTGAAGTATGC
AGCTCTACTGTATGTACTTCATGGAAGAACAAGGAAGAATCGCAGAGACA
ACTATAACAGCAACATATCCACACAACCACAGTGGTGTGTCTCACTTGCC
TCTCTACCGCCTCCAACCCTAAACCAAACCCAAATCATGCACCAATTTTA
AATTGAAGAAATTACGGCAGACGGTCATTGTCCTAGCAAGCCACTCAACC
CCCAAAGAGTCAACCACCAACATTGAACAGGAAGAAGATGAGCCAACCCC
CTCCCCATCCCTAACCCTAAACCCTGAAACTCGTGGCACTTGTTCTGGGT
CCAGGCTGGCGGCCAAGGAAGTGATGGGGTGCTTTGACTTTAACAGCAAG
GCATTCTTGAGCCTGATGTCCCGCAAGGGAGTTGGGACCTTAGCAGATGG
TACTGTGGGGGGGCAGGAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig995:10065..12484-

>mRNA_D-mesarthrocarpus_Contig995.4.1 ID=mRNA_D-mesarthrocarpus_Contig995.4.1|Name=mRNA_D-mesarthrocarpus_Contig995.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=570bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig995:10065..12484- (Discosporangium mesarthrocarpum MT17_79)
GTGGTGGGGCTGCTAGGGGAATACTTGGAGGGCTCTCCGCTGCTCAGCGA
CCTCCTAGCCTTGTGGGACCTCCCTCTGAGGAAGTCCGTGGTTGCGATAG
CAGCAGCACACACTGAGGCACTGGCGGCGGTTTTGGACTGCCTCGCAGGC
GTTGTCGCCAAGGGGATATCTGCCCTGGGCCCAGGGCCCGACGCGGCGGA
GCCCTGTGGGACACGGGCCAGGGTAGGAGGGAAGGCAGGGCCAGCAGGGG
CTGGGGCTGGGGCTGGGGGAGGGTCTGTCGTGGAGGGAGCGGAAGCAACA
GGGTTAGGGCTATGCAGGAGGATTATCCGTGAGAGGTTTTCCCAACTCTG
CTCACAGCTTGGACCCACATCCAACAAGGACAAGGGGGAGGGGATTGAGG
AGGACCAGGTGGTGGCCACCCTACGCCTCTTGGTGGGGATCGTGAGGTTC
CACAGGCTGGCGGCCAAGGAAGTGATGGGGTGCTTTGACTTTAACAGCAA
GGCATTCTTGAGCCTGATGTCCCGCAAGGGAGTTGGGACCTTAGCAGATG
GTACTGTGGGGGGGCAGGAG
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