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Homology
BLAST of mRNA_D-mesarthrocarpus_Contig983.2.2 vs. uniprot
Match: D7FS80_ECTSI (B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS80_ECTSI) HSP 1 Score: 135 bits (339), Expect = 6.520e-32 Identity = 137/230 (59.57%), Postives = 166/230 (72.17%), Query Frame = 2 Query: 566 KNSLMEQMLKTAGQRQHWQEAIDLFDKMKAEGMSLDKLAYVAALRACSKGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKVSLYTAVMNACYTVGDLDGILAVADRLRDQRLKPDHSTYHLMVTSHIGRLDWVSATKALVDMSKDGLVPSKRSARQWRLASAALEEVDLDVDE----RDGEKAGTREDEDRNV*IVGSEGEFGD 1243
K LM QM+K AGQRQHW+EAI LFD+M+ +G+ K AY AALR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VGD+D ILA+ ++LR Q L PDH+ YHL+VTSHI +LDWVSAT+ALV+M + GL P+ SAR+WRLA+A +EE+D++V+E R+GE+A R + G+ +GD
Sbjct: 89 KKRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANAVIEEIDIEVNEDYMPREGEEADDR--------MQGAGSRWGD 310
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig983.2.2 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FS80_ECTSI | 6.520e-32 | 59.57 | B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7FS80 |
| PFAMs | PPR,PPR_2 |
| Model size | 1515 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | chloroplast |
| Exons | 8 |
| Evalue | 7.76e-34 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota |
| Ec32 ortholog description | B1358B12.18 |
| Ec32 ortholog | Ec-01_000870.1 |
| Description | endonuclease activity |
| Cds size | 1071 |
| COG category | S |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791134.4841044-UTR-D-mesarthrocarpus_Contig983:2254..2556 | 1680791134.4841044-UTR-D-mesarthrocarpus_Contig983:2254..2556 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig983 2255..2556 - |
| 1680791134.6015463-UTR-D-mesarthrocarpus_Contig983:6162..6304 | 1680791134.6015463-UTR-D-mesarthrocarpus_Contig983:6162..6304 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig983 6163..6304 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791134.497299-CDS-D-mesarthrocarpus_Contig983:2556..2736 | 1680791134.497299-CDS-D-mesarthrocarpus_Contig983:2556..2736 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 2557..2736 - |
| 1680791134.5111048-CDS-D-mesarthrocarpus_Contig983:3018..3168 | 1680791134.5111048-CDS-D-mesarthrocarpus_Contig983:3018..3168 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 3019..3168 - |
| 1680791134.5239878-CDS-D-mesarthrocarpus_Contig983:3570..3693 | 1680791134.5239878-CDS-D-mesarthrocarpus_Contig983:3570..3693 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 3571..3693 - |
| 1680791134.5354166-CDS-D-mesarthrocarpus_Contig983:4368..4470 | 1680791134.5354166-CDS-D-mesarthrocarpus_Contig983:4368..4470 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 4369..4470 - |
| 1680791134.5497966-CDS-D-mesarthrocarpus_Contig983:4875..4997 | 1680791134.5497966-CDS-D-mesarthrocarpus_Contig983:4875..4997 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 4876..4997 - |
| 1680791134.5617752-CDS-D-mesarthrocarpus_Contig983:5250..5502 | 1680791134.5617752-CDS-D-mesarthrocarpus_Contig983:5250..5502 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 5251..5502 - |
| 1680791134.5723515-CDS-D-mesarthrocarpus_Contig983:5737..5776 | 1680791134.5723515-CDS-D-mesarthrocarpus_Contig983:5737..5776 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 5738..5776 - |
| 1680791134.583557-CDS-D-mesarthrocarpus_Contig983:6059..6162 | 1680791134.583557-CDS-D-mesarthrocarpus_Contig983:6059..6162 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig983 6060..6162 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig983.2.2 >prot_D-mesarthrocarpus_Contig983.2.2 ID=prot_D-mesarthrocarpus_Contig983.2.2|Name=mRNA_D-mesarthrocarpus_Contig983.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=357bp
MASNVISTWVVGFVALSTTCSAFAPVAPYSTCPPGERWWSTDGTLYKESS
VPRPRPSSESRRVRPDRRMAGCRAAATALMTVTGHGCLGVDHYRARIWRR
CRRPRSGQGWGQAPVQATKGGAGGGSASGREVEVSFLKGVGKNSLMEQML
KTAGQRQHWQEAIDLFDKMKAEGMSLDKLAYVAALRACSKGAAWERAIQL
FDNCIEEGYDLDEVMVTSAVKACCQAGRPVEAEALLAKGVARGVQPKVSL
YTAVMNACYTVGDLDGILAVADRLRDQRLKPDHSTYHLMVTSHIGRLDWV
SATKALVDMSKDGLVPSKRSARQWRLASAALEEVDLDVDERDGEKAGTRE
DEDRNV* back to topmRNA from alignment at D-mesarthrocarpus_Contig983:2255..6304- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig983.2.2 ID=mRNA_D-mesarthrocarpus_Contig983.2.2|Name=mRNA_D-mesarthrocarpus_Contig983.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4050bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig983:2255..6304- (Discosporangium mesarthrocarpum MT17_79)
GCAAGTATGGCTTCGTTAAGAACACCGAGCCTTAAGAGCGACGTTATATA
CCTAACATGACTCCACGCGCGGACACTTTCAGCGCGCAGACGACCGTGAA
TGAGGCATCCTTCGATCAGCCTCATCAACCCCCTCTCTCAAAATGGCTTC
AAACGTGATATCAACATGGGTTGTTGGTTTCGTTGCTTTGAGCACGACTT
GCTCAGCATTTGCTCCTGTTGCTCCCTATTCTACGTGCCCTCCAGGTGGG
TCTCGATTAACCCCGTGGAACAGCAAATACTCCAAGTCTCTTTCCTCTTG
ACAGGTTTCCAGCTGCCATGGCTTTTGCACCGTAAGAGAAATTACAAGGA
CGGGGCACGGGTTCAATGAATAACATCAGGTAGTGAAGAGTTTCTGCGTT
GGGCTCCGAATCGTGGAGGCTGATGTGGCAAAACGGTTGGGGGCATCGTC
CATCGCAAAAGTGTAAGGTAAACCATGCACCCATTTCGCTCCGCTTCCTT
TCCCACCCCCACTGCATCGGGTGAGCAGGCGAACGATGGTGGAGCACCGA
TGGAACATTGTATAAAGGTAAGTTAAATGAACCCGACGCATGTTTTGGAC
ACATTTTCTGGTGACTCTCCCATATGGGAAATAAGGGATGTCATGTTTGT
CATCGAAACACCTCACGCGAACGTTTTGTAGACATTGTCCAAACCCTTGG
GAGTATGCGGGATCTCACTTATTCATGTAGTTCAGACCCTGCAATACCCC
GATGCCCTCAGTGACCACCTCACAATACCTGTTGTATTCCCTTGATCCTC
AGAAAGCTCGGTTCCACGGCCACGGCCCTCGTCTGAGTCTAGACGAGTGC
GGCCAGATCGTAGAATGGCTGGTTGCCGAGCCGCAGCCACAGCGCTCATG
ACGGTAACTGGGCATGGGTGTTTGGGGGTTGATCATTATCGGGCTAGAAT
CTGGCGCCGATGCCGCCGACCACGGTCAGGGCAGGGTTGGGGGCAAGCAC
CGGTTCAAGCCACGAAGGGCGGAGCAGGTGGTGGCAGCGCCTCCGGACGG
GAAGGTGCGCCCTAACCCTAATGTTATGGTAGTGCTCCACCTCGTGCGGG
GCTTGTGCAAACCCATTTCTTGTTACTCTTGGCAGCAGGGTTGATAGACT
ATTTCCGAAGGAATTGGCTGTGCATGAAGACCAGGCGAGAAGTGTTGCAA
CGAGGGCTTTTTAAGGGTTGTTGAAGTATGTCCGTTTTGACACCCCCTTG
ATTTTCCCAGTTTCCGTGCGTTCCTCAACTCCTGCTGCTTCGTGCTGGAA
CTGGCAGTGGAGGTAAGCTTTTTGAAGGGGGTTGGCAAGAACAGCCTTAT
GGAGCAAATGCTGAAGACAGCTGGACAGCGCCAACATTGGCAGGAAGCGA
TAGACCTGTTCGACAAGATGAAGGCCGAGGTGTGACTTGAGAGGGTACAG
TGGAACTCGGAGGGAGATAGAGCAGGCAGACTTTGTGTACAGTTGAAGGG
TTGGGGTTGCAGTTGGGTGGGGGAGTACAGCAGGGGCACTTCCCATGTGC
TGGCTGCCTAAGCTGAACTTACCAATAATCAGTCATACTTTTCTCTTCAG
AGAAGAGGTGCCTACCCCAATCAGGTCCCACTGTGCGCATAGATTGAATG
ACCATGGACAGGAAATGCCTGGCGTCCATAGGAACATAACAGGTTCACGC
ATACATGGGGGTCAGCCATCCACAACCTTCCCAGCAACATCACCAACATG
ACCAAATGTCTCTCCACCAAAACTGGATTGTCCCTCCCTACATTCCTCTG
GCACATATGGGGACTACATTATAACTCTGCAAAGGGAATGAGTCTGGATA
AGCTAGCGTATGTAGCTGCTCTGCGGGCCTGTTCCAAGGGGGCAGCATGG
GAGAGGGCAATCCAACTCTTTGACAATTGCATAGAAGTGAGTGATGGGTC
ATAGGCATTACTTTTGATTAGAGGGGAACTTTGGTCCCCTTCCAGTTGCC
CTTTTTGGTGTCACACCTTTGACATCTGTCATGTTAAGCCACCCAGCTGC
CTGTGAAGGCAGGTCACTGCACAGCCCACTCACAACACTGTTTCAGCCGC
CGGCTCTGCCTCTGGGGTGTCATTTTCTTTTGCCTCCCCTAGTACTTTGT
ACTAATGAAGCCTTGAACTCACCCATTATGGTATGGGGGATCCATGAAAT
GGACAAACTTGAGTCTGTGTGGCCTGAGGAGGGCAAAGTGGAAGTGTGGG
AGGATGATATATGTGGATGGGGTGATTTTGGAGGTAATTTTTGTGACAAC
AAGAGTGTTTTTTTTTCTTCTTTGAGGAATGCGTTGGGCATACAGGACTG
TAGTGCACTGGAGGAAGCAACCCTCCATACTCCGGGTCAGGCCTGTGGTT
TGTTTCTCCCCTGCCTCATTGTGCCCAACATCTTGTTTGTTTTTTTTTGG
TTTCTGTGGCTTGCTGTCCCTTTTCCCATCAAAGACTGATCGTGACCTTG
TTGAGCATGTCCGGTGCGGGGGAATCCATGGTCACCTTCCACCACTTCCC
CCAAACTGAATAGCCGTCGCCTTGTTCCACACTTTTCACTGCTTTTCCAT
GGCATGGGCAGGAAGGGTATGATCTGGACGAGGTGATGGTAACATCCGCG
GTAAAGGCATGTTGTCAAGCAGGCAGGCCAGTAGAGGCTGAGGCCCTCTT
GGCCAAAGGGGTGGCACGTGGGGTTCAGCCCAAGGTGAGGAAGAGAACTG
CCAAGGGCATCAGCTATTTACCACCCAGCTGAGGGCATGCTTGAGGTGCC
CATTTAGCTCCATCAGGTCAAGGCTATCATCTGTTGGCGTGAGACAGAGC
TCTGGAGCCATAGGCAACTGCTGCAGACAAATTTTAAGCTCTGGAGCCAT
TCTATGTAATTGCAGGTACTGCCACAATGTTCTCATTCTGTTGCCCACTC
TAACCCCCGTGGTTGATACTTGAAATCCTCGGTACAGTATTGGCTGTACA
GCCACCACAAAGACCGCTAAGGATCTCCCCAGCACACAGGAGACAGGGGC
TTCAACTTTGCTCCCTCGCCTCCCTCCCTCCCTCCCTCCCTCCTTGTCCC
TCCTCTCCCTCCCTGTGCACTATGGGCACTGTTTAGGTGTCACTGTACAC
AGCTGTCATGAATGCCTGCTACACAGTGGGGGATTTGGATGGAATCCTTG
CTGTGGCAGACAGGCTGAGGGACCAGCGTCTTAAGCCAGACCACAGCACA
TATCATCTCATGGTCACTTCCCACATTGGCAGGCTGGTGAGTTTCAGGGC
TAATGTACTGAACAGCGGGCAGGGTGCTTTGAAACATAGGGTGTATGTGG
AATTGGGGCTGTGAAGTTGGATTCAGACCACAAGGATGATGGAGGGGAGG
TGCCTGTGGAGTAGTGGAACCCAGAAGCAGCCTTGTGAGTTGTGACTTTG
GTAAGAGATCTCTGGTTCTGAAGGTGACTTCATGATAACGTTGCCATGCC
TGGCATGAAAAAGTCACTCCATGTCACAATGCCGCAGGCTTTTTGATTTC
ACCTCTCACCCTCTGCAGGATTGGGTCAGTGCCACGAAGGCCTTGGTGGA
CATGAGCAAGGATGGCCTGGTTCCCAGCAAGAGGTCAGCAAGGCAGTGGC
GTCTTGCCTCGGCTGCCTTGGAGGAGGTTGACCTCGATGTAGATGAACGT
GACGGGGAAAAGGCTGGGACGAGAGAGGATGAAGATAGGAATGTTTGAAT
CGTCGGGAGTGAGGGAGAATTTGGGGATGAAAGGGTCAATTGACTCTGCT
TACTCTGTGCGTGTAGACAGCTTAGGTTTGTGTTTTTAAGAATTAGTGAG
ATTGAATTGAGTGTCATGTTGTGTCTGTTCTTTGGAGATGAGAGCCCCCT
TGCTTCTTAATTTTAAGCCTGTGAACAGTTGGTTGCAACCAGTAGACGAG
CTCTAATATAATGCTTCCAACTCTTTACCGGTCCATCCGTTCGATCTTTT
GAATGAGATCACGAACACAACATGTATACATTCATAAATGATGATTGACC
back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig983:2255..6304- >mRNA_D-mesarthrocarpus_Contig983.2.2 ID=mRNA_D-mesarthrocarpus_Contig983.2.2|Name=mRNA_D-mesarthrocarpus_Contig983.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1071bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig983:2255..6304- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTTCAAACGTGATATCAACATGGGTTGTTGGTTTCGTTGCTTTGAG
CACGACTTGCTCAGCATTTGCTCCTGTTGCTCCCTATTCTACGTGCCCTC
CAGGCGAACGATGGTGGAGCACCGATGGAACATTGTATAAAGAAAGCTCG
GTTCCACGGCCACGGCCCTCGTCTGAGTCTAGACGAGTGCGGCCAGATCG
TAGAATGGCTGGTTGCCGAGCCGCAGCCACAGCGCTCATGACGGTAACTG
GGCATGGGTGTTTGGGGGTTGATCATTATCGGGCTAGAATCTGGCGCCGA
TGCCGCCGACCACGGTCAGGGCAGGGTTGGGGGCAAGCACCGGTTCAAGC
CACGAAGGGCGGAGCAGGTGGTGGCAGCGCCTCCGGACGGGAAGTGGAGG
TAAGCTTTTTGAAGGGGGTTGGCAAGAACAGCCTTATGGAGCAAATGCTG
AAGACAGCTGGACAGCGCCAACATTGGCAGGAAGCGATAGACCTGTTCGA
CAAGATGAAGGCCGAGGGAATGAGTCTGGATAAGCTAGCGTATGTAGCTG
CTCTGCGGGCCTGTTCCAAGGGGGCAGCATGGGAGAGGGCAATCCAACTC
TTTGACAATTGCATAGAAGAAGGGTATGATCTGGACGAGGTGATGGTAAC
ATCCGCGGTAAAGGCATGTTGTCAAGCAGGCAGGCCAGTAGAGGCTGAGG
CCCTCTTGGCCAAAGGGGTGGCACGTGGGGTTCAGCCCAAGGTGTCACTG
TACACAGCTGTCATGAATGCCTGCTACACAGTGGGGGATTTGGATGGAAT
CCTTGCTGTGGCAGACAGGCTGAGGGACCAGCGTCTTAAGCCAGACCACA
GCACATATCATCTCATGGTCACTTCCCACATTGGCAGGCTGGATTGGGTC
AGTGCCACGAAGGCCTTGGTGGACATGAGCAAGGATGGCCTGGTTCCCAG
CAAGAGGTCAGCAAGGCAGTGGCGTCTTGCCTCGGCTGCCTTGGAGGAGG
TTGACCTCGATGTAGATGAACGTGACGGGGAAAAGGCTGGGACGAGAGAG
GATGAAGATAGGAATGTTTGA back to top
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