mRNA_D-mesarthrocarpus_Contig9773.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9773.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9773.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9773.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9773contigD-mesarthrocarpus_Contig9773:154..1171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog556268.OFAG_02160
PFAMsSel1
Model size601
Max annot lvl2|Bacteria
KEGG koko:K07126
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000122
EggNOG OGsCOG0790@1|root,COG0790@2|Bacteria
Descriptionbeta-lactamase activity
Cds size564
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791129.2254512-UTR-D-mesarthrocarpus_Contig9773:153..1731680791129.2254512-UTR-D-mesarthrocarpus_Contig9773:153..173Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9773 154..173 -
1680791129.274251-UTR-D-mesarthrocarpus_Contig9773:1154..11711680791129.274251-UTR-D-mesarthrocarpus_Contig9773:1154..1171Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9773 1155..1171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791129.2368028-CDS-D-mesarthrocarpus_Contig9773:173..3781680791129.2368028-CDS-D-mesarthrocarpus_Contig9773:173..378Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9773 174..378 -
1680791129.2463775-CDS-D-mesarthrocarpus_Contig9773:496..6701680791129.2463775-CDS-D-mesarthrocarpus_Contig9773:496..670Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9773 497..670 -
1680791129.2625883-CDS-D-mesarthrocarpus_Contig9773:969..11541680791129.2625883-CDS-D-mesarthrocarpus_Contig9773:969..1154Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9773 970..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9773.1.1prot_D-mesarthrocarpus_Contig9773.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9773 174..1154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9773.1.1

>prot_D-mesarthrocarpus_Contig9773.1.1 ID=prot_D-mesarthrocarpus_Contig9773.1.1|Name=mRNA_D-mesarthrocarpus_Contig9773.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=188bp
MLYSGVGCLKNYREAAWYYRMAAEANAPAAANAMGLMHELGRGMGQNLAM
AAAWYRRAADLGSAEGAFNCALLLERGDPRASSNSPSPPPFFPRAPPSGA
PPPLPELQVNTASTIPEKTPPAPVGSGGGGGGGGNGFSVASGGTIGTCKA
LLPPLAIGGTLPQPPRCSRGHWGWGTWRQGPSTEDYG*
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mRNA from alignment at D-mesarthrocarpus_Contig9773:154..1171-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9773.1.1 ID=mRNA_D-mesarthrocarpus_Contig9773.1.1|Name=mRNA_D-mesarthrocarpus_Contig9773.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1018bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9773:154..1171- (Discosporangium mesarthrocarpum MT17_79)
CGACATGCGTGGGCGACATGTTGTACTCGGGAGTCGGGTGCCTGAAAAAC
TACAGGGAGGCAGCCTGGTACTACAGGATGGCAGCAGAGGCAAACGCCCC
AGCAGCAGCCAATGCCATGGGCCTCATGCATGAGCTGGGGAGAGGGATGG
GACAGAACCTGGCCATGGCGGCAGCATGGTACAGGCGGGCTGCAGACCTT
GGGTGAGAAGCGCTTCAAGGAAAAGGAATACTTTGGGGGGGCAAGTAGAG
CGTGAGTTTGGGGAAGGAGGTTTGTTTTCTTATCTTTGGCATCTCTGTAG
CTCTATAGCTCTATACCTTTATATATCTACACGCAGACTATCAGCGGGGA
TTAACTCACAAAATACAATCCCCTTGCACAAAGCCAAAGCCCATACACCC
GCCATCCTCAAGCAGACCTAAGGCAGCCCTTCCCTTGAAATTCAGGTTAA
CCCCCTGCTCTGCCTCTTTGTGACCCCCTGCCCCCTTATCCCTCCTCCCA
GGTCTGCAGAAGGAGCCTTCAACTGTGCCCTGCTCCTAGAACGAGGAGAC
CCCCGTGCCAGTTCCAACTCCCCATCACCCCCCCCGTTCTTTCCCCGGGC
TCCTCCTTCCGGAGCACCCCCCCCACTGCCAGAACTTCAGGTCAACACAG
CCTCAACAATACCAGAGAAGACACCGTGAACCCCCAGGCCACTACCTCGC
GGCCCCCTCCAACTTGCGCCCCCCCAATGCCACCATCAAAGCTACAACCA
CCCACCCACCCACCCCCGCCCCCACCGCCATCACACCCCCAAGCCCCGCC
CCAGTTGGGAGCGGCGGCGGCGGTGGTGGCGGTGGCAACGGGTTCTCCGT
CGCCTCGGGAGGCACTATCGGCACATGCAAAGCCCTCCTCCCCCCTCTTG
CTATTGGGGGGACCCTTCCGCAGCCGCCGAGATGTTCGAGAGGGCATTGG
GGATGGGGCACTTGGCGCCAAGGGCCGAGCACCGAAGACTATGGCTGAGG
CTGAGGGTGGACAGACTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9773:154..1171-

>mRNA_D-mesarthrocarpus_Contig9773.1.1 ID=mRNA_D-mesarthrocarpus_Contig9773.1.1|Name=mRNA_D-mesarthrocarpus_Contig9773.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=564bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9773:154..1171- (Discosporangium mesarthrocarpum MT17_79)
ATGTTGTACTCGGGAGTCGGGTGCCTGAAAAACTACAGGGAGGCAGCCTG
GTACTACAGGATGGCAGCAGAGGCAAACGCCCCAGCAGCAGCCAATGCCA
TGGGCCTCATGCATGAGCTGGGGAGAGGGATGGGACAGAACCTGGCCATG
GCGGCAGCATGGTACAGGCGGGCTGCAGACCTTGGGTCTGCAGAAGGAGC
CTTCAACTGTGCCCTGCTCCTAGAACGAGGAGACCCCCGTGCCAGTTCCA
ACTCCCCATCACCCCCCCCGTTCTTTCCCCGGGCTCCTCCTTCCGGAGCA
CCCCCCCCACTGCCAGAACTTCAGGTCAACACAGCCTCAACAATACCAGA
GAAGACACCCCCCGCCCCAGTTGGGAGCGGCGGCGGCGGTGGTGGCGGTG
GCAACGGGTTCTCCGTCGCCTCGGGAGGCACTATCGGCACATGCAAAGCC
CTCCTCCCCCCTCTTGCTATTGGGGGGACCCTTCCGCAGCCGCCGAGATG
TTCGAGAGGGCATTGGGGATGGGGCACTTGGCGCCAAGGGCCGAGCACCG
AAGACTATGGCTGA
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