mRNA_D-mesarthrocarpus_Contig9635.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9635.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig9635.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A846FUY6_9CYAN (30S ribosomal protein S6 n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FUY6_9CYAN)

HSP 1 Score: 229 bits (585), Expect = 4.420e-74
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVK 342
            MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVK
Sbjct:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVK 114          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A5C6RTN9_9BACT (30S ribosomal protein S6 n=1 Tax=Phaeodactylibacter luteus TaxID=1564516 RepID=A0A5C6RTN9_9BACT)

HSP 1 Score: 191 bits (485), Expect = 2.240e-59
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKK 345
            MKNYEVTFIVDPVLSGDEIKATAQTYVD +K EG +I+HVDEMGLR LAYPINRR SG+Y+ VEF+ PNGELID +ELA RRDERIMRFL + LDKYGVKYN DKR G IGKVKK
Sbjct:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDHLKNEGCQIVHVDEMGLRQLAYPINRRTSGIYYCVEFEAPNGELIDPMELAFRRDERIMRFLSVALDKYGVKYNADKRAGKIGKVKK 115          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A2D0MYC4_9BACT (30S ribosomal protein S6 n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0MYC4_9BACT)

HSP 1 Score: 186 bits (473), Expect = 2.830e-57
Identity = 92/115 (80.00%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKK 345
            MK+YE+TFIVDPVLSGDEIKATAQTYVDQ+K+ G  I+HVDEMGLR LAYPIN+R+SGVY+TVEF   +G  IDKLEL+LRRDERIMRFL ++LDKYGVKYNEDKR GLIGKVKK
Sbjct:    1 MKSYEITFIVDPVLSGDEIKATAQTYVDQLKEVGATIVHVDEMGLRQLAYPINKRSSGVYYTVEFTIEDGTPIDKLELSLRRDERIMRFLTVRLDKYGVKYNEDKRKGLIGKVKK 115          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A098RZL8_9BACT (30S ribosomal protein S6 n=1 Tax=Phaeodactylibacter xiamenensis TaxID=1524460 RepID=A0A098RZL8_9BACT)

HSP 1 Score: 186 bits (471), Expect = 3.300e-57
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKKK 348
            MKNYEVTFIVDPVLS +EI+ATAQTYVD +K EG +I+HVDEMGLR LAYPINRR SG+Y+ +EF+ PNGELID +ELALRRDERIMRFL   LDKYGVKYN DKR G IGKVKKK
Sbjct:    1 MKNYEVTFIVDPVLSREEIEATAQTYVDHLKNEGCQIVHVDEMGLRQLAYPINRRTSGIYYCIEFEAPNGELIDVMELALRRDERIMRFLTAALDKYGVKYNADKRAGKIGKVKKK 116          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A7Y5R6L7_9BACT (30S ribosomal protein S6 n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y5R6L7_9BACT)

HSP 1 Score: 184 bits (466), Expect = 1.720e-56
Identity = 89/119 (74.79%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKKKEKK 357
            MK  EVTFIVDPVLSGDEI+ATAQTYVD +K  G  I+HVD+MGLRTLA+PI +RNSGVYF +EFQ P G +ID +ELALRRDERIMRFL +KLDKYGVKYNEDKRNGLIGK  +++ K
Sbjct:    1 MKQLEVTFIVDPVLSGDEIQATAQTYVDLLKNNGCTIVHVDDMGLRTLAFPIRKRNSGVYFCIEFQTPTGSIIDNMELALRRDERIMRFLTVKLDKYGVKYNEDKRNGLIGKKSRRQDK 119          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A2T4XAF4_9BACT (30S ribosomal protein S6 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4XAF4_9BACT)

HSP 1 Score: 183 bits (464), Expect = 7.230e-56
Identity = 90/122 (73.77%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKK---KEKK 357
            M+NYEVTFIVDPVLSG+EIK TAQ Y D +K  G  I+H+DEMGLRTLAYPIN+RNSGVY+ +EFQ  NGE  D LELALRRDERIMRFL  +LDK+G+KYNEDKRNGLIGK K+   KEKK
Sbjct:    1 MRNYEVTFIVDPVLSGEEIKTTAQAYSDMLKGAGANIVHIDEMGLRTLAYPINKRNSGVYYCIEFQSENGEFTDDLELALRRDERIMRFLTFRLDKFGIKYNEDKRNGLIGKAKRPKAKEKK 122          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A3M0YWS9_9BACT (30S ribosomal protein S6 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M0YWS9_9BACT)

HSP 1 Score: 179 bits (455), Expect = 4.130e-55
Identity = 85/112 (75.89%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGK 336
            M++YEVTFIVDPVLSGDEIKATAQ+YVD +KK G EI+HVDEMGLR LAYPIN+R++GVY+ +EF+ P+G +ID LELA+RRDERIMRFL +KLDKYGVK+NEDKR G IGK
Sbjct:    1 MRDYEVTFIVDPVLSGDEIKATAQSYVDHLKKAGCEIVHVDEMGLRELAYPINKRSTGVYYCIEFKAPDGSVIDPLELAMRRDERIMRFLTVKLDKYGVKFNEDKRAGRIGK 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: UPI000365C705 (30S ribosomal protein S6 n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI000365C705)

HSP 1 Score: 178 bits (452), Expect = 5.260e-54
Identity = 87/121 (71.90%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKKKEKKSR 363
            M+NYEVTFIVDPVLSG+EIK TAQTY D +K     I+H+DEMGLRTLAYPIN+RNSGVY+ +EFQ    +LID LELALRRDERIMRFL  KLDK+G+KYNEDKRNGLIGK K+ + K +
Sbjct:    1 MRNYEVTFIVDPVLSGEEIKTTAQTYSDMLKTAKANIVHIDEMGLRTLAYPINKRNSGVYYCIEFQMETVDLIDDLELALRRDERIMRFLTYKLDKFGIKYNEDKRNGLIGKAKRPKSKEK 121          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A7Y2C2N6_9BACT (30S ribosomal protein S6 n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2C2N6_9BACT)

HSP 1 Score: 176 bits (445), Expect = 3.660e-53
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKKKEKKS 360
            M+N+EVTFIVDPVLSGDEIKATAQ Y D IKKEG +I+H DEMGLR LAYPINRR SGVY+ +EFQ   G  I K+EL+ RRDERIMRFL + LDKYG+KYN DKR+G IGK KK+  K+
Sbjct:    1 MRNHEVTFIVDPVLSGDEIKATAQAYADLIKKEGAQIVHTDEMGLRQLAYPINRRTSGVYYCIEFQSDTGAFIPKMELSFRRDERIMRFLTVSLDKYGIKYNVDKRDGKIGKAKKRVSKA 120          
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Match: A0A2C6CKF3_9BACT (30S ribosomal protein S6 n=1 Tax=Lewinellaceae bacterium SD302 TaxID=2014804 RepID=A0A2C6CKF3_9BACT)

HSP 1 Score: 173 bits (439), Expect = 2.620e-52
Identity = 83/115 (72.17%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAYPINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVKYNEDKRNGLIGKVKK 345
            M+NYE TFIVDPVLSGDEIK TAQ YV+Q++KEG EI+ VDEMGLRTLAYPIN++NSGVY+ VE+  PNG  +   ELALRRDERIMRFL + LDKYGV+YN DKR+G I K KK
Sbjct:    1 MRNYETTFIVDPVLSGDEIKTTAQAYVEQLQKEGCEIVFVDEMGLRTLAYPINKKNSGVYYCVEYTAPNGAFLQTFELALRRDERIMRFLTVALDKYGVQYNADKRDGKISKAKK 115          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9635.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A846FUY6_9CYAN4.420e-74100.0030S ribosomal protein S6 n=1 Tax=Cyanothece sp. SI... [more]
A0A5C6RTN9_9BACT2.240e-5980.8730S ribosomal protein S6 n=1 Tax=Phaeodactylibacte... [more]
A0A2D0MYC4_9BACT2.830e-5780.0030S ribosomal protein S6 n=1 Tax=Flavilitoribacter... [more]
A0A098RZL8_9BACT3.300e-5778.4530S ribosomal protein S6 n=1 Tax=Phaeodactylibacte... [more]
A0A7Y5R6L7_9BACT1.720e-5674.7930S ribosomal protein S6 n=1 Tax=Saprospiraceae ba... [more]
A0A2T4XAF4_9BACT7.230e-5673.7730S ribosomal protein S6 n=1 Tax=Bacteroidetes bac... [more]
A0A3M0YWS9_9BACT4.130e-5575.8930S ribosomal protein S6 n=1 Tax=Bacteroidetes bac... [more]
UPI000365C7055.260e-5471.9030S ribosomal protein S6 n=1 Tax=Lewinella cohaere... [more]
A0A7Y2C2N6_9BACT3.660e-5370.8330S ribosomal protein S6 n=1 Tax=Saprospiraceae ba... [more]
A0A2C6CKF3_9BACT2.620e-5272.1730S ribosomal protein S6 n=1 Tax=Lewinellaceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9635contigD-mesarthrocarpus_Contig9635:3691..4302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122176.KB903560_gene3561
Preferred namerpsF
PFAMsRibosomal_S6
Model size555
Max annot lvl976|Bacteroidetes
KEGG koko:K02990
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904
Exons2
Evalue8.63e-55
EggNOG OGsCOG0360@1|root,COG0360@2|Bacteria,4NQ9W@976|Bacteroidetes,1ISJI@117747|Sphingobacteriia
DescriptionBinds together with S18 to 16S ribosomal RNA
Cds size555
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791117.1065779-CDS-D-mesarthrocarpus_Contig9635:3690..38391680791117.1065779-CDS-D-mesarthrocarpus_Contig9635:3690..3839Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9635 3691..3839 -
1680791117.121504-CDS-D-mesarthrocarpus_Contig9635:3896..43021680791117.121504-CDS-D-mesarthrocarpus_Contig9635:3896..4302Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9635 3897..4302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9635.4.1prot_D-mesarthrocarpus_Contig9635.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9635 3691..4302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9635.4.1

>prot_D-mesarthrocarpus_Contig9635.4.1 ID=prot_D-mesarthrocarpus_Contig9635.4.1|Name=mRNA_D-mesarthrocarpus_Contig9635.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=185bp
MKNYEVTFIVDPVLSGDEIKATAQTYVDQIKKEGFEIIHVDEMGLRTLAY
PINRRNSGVYFTVEFQGPNGELIDKLELALRRDERIMRFLCIKLDKYGVK
YNEDKRNGLIGKVKKKEKKSRDNRGRGNRGNQRRGEKEAPAKTAAAPTPE
KEAPAKAAAPAPEKEAPAKTATPAPAKAAEKEEE*
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mRNA from alignment at D-mesarthrocarpus_Contig9635:3691..4302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9635.4.1 ID=mRNA_D-mesarthrocarpus_Contig9635.4.1|Name=mRNA_D-mesarthrocarpus_Contig9635.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9635:3691..4302- (Discosporangium mesarthrocarpum MT17_79)
ATGAAAAATTATGAAGTTACCTTCATTGTAGACCCAGTGCTGTCGGGGGA CGAGATCAAAGCGACAGCTCAGACATATGTCGATCAAATCAAAAAAGAAG GATTCGAAATCATCCACGTTGATGAAATGGGCCTTCGCACTTTGGCTTAT CCAATTAACCGAAGAAATTCTGGTGTATACTTCACCGTTGAATTTCAAGG TCCAAATGGTGAGTTGATCGACAAGTTGGAACTGGCTCTACGAAGAGATG AGCGCATTATGCGCTTCTTATGCATCAAGCTTGATAAGTATGGTGTAAAG TACAACGAAGACAAGAGAAACGGATTGATTGGTAAAGTGAAGAAAAAGGA GAAGAAAAGCCGAGACAATCGAGGTCGAGGTAATAGAGGCAACCAAAGAA GAGGTGGTGGTAGATCACAATCCTCTAGAGATGGTGGCGGCTCTAAATCT GCTCCAGCTAGAGAAAAAGAGGCGCCAGCTAAAACGGCGGCGGCCCCTAC TCCTGAAAAAGAGGCACCGGCTAAGGCTGCGGCCCCTGCTCCAGAAAAGG AGGCTCCTGCTAAAACTGCGACTCCCGCTCCTGCTAAGGCAGCTGAGAAA GAGGAGGAATAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9635:3691..4302-

>mRNA_D-mesarthrocarpus_Contig9635.4.1 ID=mRNA_D-mesarthrocarpus_Contig9635.4.1|Name=mRNA_D-mesarthrocarpus_Contig9635.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=555bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9635:3691..4302- (Discosporangium mesarthrocarpum MT17_79)
ATGAAAAATTATGAAGTTACCTTCATTGTAGACCCAGTGCTGTCGGGGGA
CGAGATCAAAGCGACAGCTCAGACATATGTCGATCAAATCAAAAAAGAAG
GATTCGAAATCATCCACGTTGATGAAATGGGCCTTCGCACTTTGGCTTAT
CCAATTAACCGAAGAAATTCTGGTGTATACTTCACCGTTGAATTTCAAGG
TCCAAATGGTGAGTTGATCGACAAGTTGGAACTGGCTCTACGAAGAGATG
AGCGCATTATGCGCTTCTTATGCATCAAGCTTGATAAGTATGGTGTAAAG
TACAACGAAGACAAGAGAAACGGATTGATTGGTAAAGTGAAGAAAAAGGA
GAAGAAAAGCCGAGACAATCGAGGTCGAGGTAATAGAGGCAACCAAAGAA
GAGGTGAAAAAGAGGCGCCAGCTAAAACGGCGGCGGCCCCTACTCCTGAA
AAAGAGGCACCGGCTAAGGCTGCGGCCCCTGCTCCAGAAAAGGAGGCTCC
TGCTAAAACTGCGACTCCCGCTCCTGCTAAGGCAGCTGAGAAAGAGGAGG
AATAG
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