mRNA_D-mesarthrocarpus_Contig9601.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9601.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9601.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9601.2.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.200e-16
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   79 ESRFNVIPDSFAPPPDPIKRLYQLQHGSLQALRRGSRQH---TKAPPVIPRQAASHILMGMMPS 261
             +RFNVIPD+FAPPPDPIKRLYQLQHGS +A+ RG R+H   + APPVIPR  ++ +L+G++ S
Sbjct:  197 RARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRRHGLHSGAPPVIPRHTSAQLLVGLLAS 260
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9601.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI1.200e-1662.50F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9601contigD-mesarthrocarpus_Contig9601:1129..2810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size892
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-05_000820.1
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791114.5713372-UTR-D-mesarthrocarpus_Contig9601:1128..17501680791114.5713372-UTR-D-mesarthrocarpus_Contig9601:1128..1750Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9601 1129..1750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791114.5821328-CDS-D-mesarthrocarpus_Contig9601:1750..18391680791114.5821328-CDS-D-mesarthrocarpus_Contig9601:1750..1839Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9601 1751..1839 -
1680791114.6009781-CDS-D-mesarthrocarpus_Contig9601:2629..28101680791114.6009781-CDS-D-mesarthrocarpus_Contig9601:2629..2810Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9601 2630..2810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9601.2.1prot_D-mesarthrocarpus_Contig9601.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9601 1751..2810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9601.2.1

>prot_D-mesarthrocarpus_Contig9601.2.1 ID=prot_D-mesarthrocarpus_Contig9601.2.1|Name=mRNA_D-mesarthrocarpus_Contig9601.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=90bp
SPLVLCFFCLSFLIHACPLLFVLGGGESRFNVIPDSFAPPPDPIKRLYQL
QHGSLQALRRGSRQHTKAPPVIPRQAASHILMGMMPSPS*
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mRNA from alignment at D-mesarthrocarpus_Contig9601:1129..2810-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9601.2.1 ID=mRNA_D-mesarthrocarpus_Contig9601.2.1|Name=mRNA_D-mesarthrocarpus_Contig9601.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1682bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9601:1129..2810- (Discosporangium mesarthrocarpum MT17_79)
TCGCCCCTGGTGCTTTGTTTTTTTTGTTTATCTTTCCTCATTCACGCCTG
CCCTCTTCTGTTTGTTTTGGGGGGAGGGGAGTCCAGATTCAATGTTATTC
CAGATTCCTTTGCTCCCCCCCCAGACCCAATCAAGCGCCTCTACCAGCTC
CAACATGGGTCCCTCCAGGCCCTAAGAAGAGGTGGGATGGGAAAAAACAA
TATGCAGAGGACAGGGTGCTTGGTGGGGGGGGGGGAGAGGATGAGCAGCA
GAGATATATCACGCCTCATCTTTCGCTCTCTCTCTCCTTTTTTCTTTTTT
TTTTGTCTCTTTCTCCGGACCGCATGCGTGCATGACATCACACTTTGGCT
TGTGGCACATTCCTTGCCAATAAGTCTAAGAAAAGGGCTGTTGGCTGTAA
CCAAGCCACCTCTGGCACTGCCTGTGCCTCCCATTCCTCATGCTCCACCC
CGCAGTGTGTGCTTGTATTCTTGATGTGTCACCAGTCTGTTCCTATGTTC
TAATGTCCATGTTGCCTACGGACCCTCAAAAGTATCTGCCGAACCACACC
CTAGATTGAGGTTATCAGGAACCATCAGCAACTCTTATCCCCAATGAACT
GTCCACACCTCATTACTCCTGCCGTGCCCTAACCCTTATTGTGATTACTT
CACCTCCCTTACTTCACCATTACCATGCCTATCCCATGGTCCCCCTTAGT
ACCCCAAAGTAGAGTAGTCCTCCCATCTCTCTTCCACAACCCTATTGTGT
GCAGTCCTCACTCTGCACACTCCCCTCCTAGCCTTGCTTCCCCCAACATC
TCCCCCCTTCCCTGCAAACTCCTATTTTTGTTATTCACCCATTCCCCAGC
CCTACTCTGGCCCTGTGCACTGCCGTCTACCCTCCTCCACCCCCCACCTG
TCATTTCTCTCATGCATCCATTTTTGTTATTTGTGTTTTTTTGGCCGTTT
GGGCTGCATGTACAAACTCAGGCTCCCGTCAGCACACAAAGGCACCCCCT
GTCATCCCCAGGCAAGCGGCATCGCACATTCTAATGGGGATGATGCCTTC
CCCGTCATGATCTGAGATGGAAAGTCGTAGAGGTAGGATGTTCATGGAAT
GCTGTGGTTTTTACCTGGCGAAGAAGAGAGGCTTAACGCGGTCATCCTAT
TCTTAAGGGGGACTGGCACCATCTCCTTATGGCGCTTCTTTAAAATATCC
CTCAATTAGGGGCAAACCATGGGGGGGGTGCTTCAGCATCCCAAGAGGCA
CTCTGCCACTGATGGGGCGTGGGGTCTGGAAATGGACATGTGGGGCAGCA
TGTGTCGCACACATGCTGAAGTATATAATTAGAAGTTGGCTTGGGAGCAC
GGAATGGTGTTTGTGGAGTGGGTGATATGTACTGTGAGGGCAACCTCCTG
TACCCTAACCCTAACCCTAATGTAGCAGCGGTGGGGAGGAGCCTGAAGGT
TGCTCAGAGGCTGGGGGTATTTTAATAGGAGGAATCAAGGTTAACGCGCT
ATTTAGTGATCATATTGTTGACGGTTACCAGACCATGGGGGTTTGGGGGT
CTGATTCCCTTGTGTAAGAAGGAATGGAGGGCAAGTCTCCACCTGATTCC
TCACTTTTTCTTTTTTGTCCCCCCTTAACCCATGTGTCCACTGTAACCCT
GCACTTGGACAAAGTGTATTTCAAGATTTGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9601:1129..2810-

>mRNA_D-mesarthrocarpus_Contig9601.2.1 ID=mRNA_D-mesarthrocarpus_Contig9601.2.1|Name=mRNA_D-mesarthrocarpus_Contig9601.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9601:1129..2810- (Discosporangium mesarthrocarpum MT17_79)
TCGCCCCTGGTGCTTTGTTTTTTTTGTTTATCTTTCCTCATTCACGCCTG
CCCTCTTCTGTTTGTTTTGGGGGGAGGGGAGTCCAGATTCAATGTTATTC
CAGATTCCTTTGCTCCCCCCCCAGACCCAATCAAGCGCCTCTACCAGCTC
CAACATGGGTCCCTCCAGGCCCTAAGAAGAGGCTCCCGTCAGCACACAAA
GGCACCCCCTGTCATCCCCAGGCAAGCGGCATCGCACATTCTAATGGGGA
TGATGCCTTCCCCGTCATGA
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