mRNA_D-mesarthrocarpus_Contig9565.1.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9565.1.2
Unique NamemRNA_D-mesarthrocarpus_Contig9565.1.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9565.1.2 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.620e-15
Identity = 60/144 (41.67%), Postives = 74/144 (51.39%), Query Frame = 1 
Query:   55 VGRYTAVPEAAVFVLRVR----GGAEGKKG------------LDEEDLVHIQHRDTSLFLSVSPTAPQDTPRLGHGGDALGMNSHHPPGGRLALTLAKWPQTTEYWRLKRAQSSELKATRHILTALTQLVVTLDTLLEEVTIQP 438
            V ++ AVP A VFV+R R     GAEG  G            L  EDLVH+QH++T LFLS  P   ++T +                 G + LT+ K P TTEYWRL RA   E  AT HILTA  QL  +LD+LL E+   P
Sbjct:  649 VDQHAAVPAATVFVIRPRRTAAAGAEGLVGPAAAEGAGADRWLGPEDLVHLQHKNTGLFLSALPL--ENTAK-----------------GGIGLTMVKSPLTTEYWRLARAPERERMATNHILTAQAQLKASLDSLLVEIEKMP 773
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9565.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMW8_ECTSI1.620e-1541.67Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9565contigD-mesarthrocarpus_Contig9565:1984..4775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMW8
Preferred nameRYR1
PFAMsAnk_2,EF-hand_8,Ins145_P3_rec,Ion_trans,MIR,RIH_assoc,RR_TM4-6,RYDR_ITPR,RyR,SPRY
Model size905
Max annot lvl2759|Eukaryota
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.65e-16
EggNOG OGsKOG3533@1|root,KOG3533@2759|Eukaryota
Descriptioninositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
Cds size903
COG categoryS
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791111.0626225-CDS-D-mesarthrocarpus_Contig9565:1985..24921680791111.0626225-CDS-D-mesarthrocarpus_Contig9565:1985..2492Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9565 1986..2492 -
1680791111.0872715-CDS-D-mesarthrocarpus_Contig9565:2795..28731680791111.0872715-CDS-D-mesarthrocarpus_Contig9565:2795..2873Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9565 2796..2873 -
1680791111.1032274-CDS-D-mesarthrocarpus_Contig9565:4214..43651680791111.1032274-CDS-D-mesarthrocarpus_Contig9565:4214..4365Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9565 4215..4365 -
1680791111.1175575-CDS-D-mesarthrocarpus_Contig9565:4608..47751680791111.1175575-CDS-D-mesarthrocarpus_Contig9565:4608..4775Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9565 4609..4775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9565.1.2prot_D-mesarthrocarpus_Contig9565.1.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9565 1986..4775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9565.1.2

>prot_D-mesarthrocarpus_Contig9565.1.2 ID=prot_D-mesarthrocarpus_Contig9565.1.2|Name=mRNA_D-mesarthrocarpus_Contig9565.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=301bp
EPLIDPDFGSGWVVTTAHVGRYTAVPEAAVFVLRVRGGAEGKKGLDEEDL
VHIQHRDTSLFLSVSPTAPQDTPRLGHGGDALGMNSHHPPGGRLALTLAK
WPQTTEYWRLKRAQSSELKATRHILTALTQLVVTLDTLLEEVTIQPDAPP
QFASRPVHTMQAAMMLPLPPATAATTASPMMPLSVPRPPGPPATEPSPAV
DPPQVEEPGLSPPMPKGTRPPPPKRVPPLAPGQQQHHRPLATGRQHLIAR
VSENSLFQATLAVSHFQITLGQGADWWQEDVESGYKEGSYGPGAGGGRRV
R
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mRNA from alignment at D-mesarthrocarpus_Contig9565:1984..4775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9565.1.2 ID=mRNA_D-mesarthrocarpus_Contig9565.1.2|Name=mRNA_D-mesarthrocarpus_Contig9565.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2792bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9565:1984..4775- (Discosporangium mesarthrocarpum MT17_79)
GAGCCACTCATCGACCCAGATTTTGGGTCAGGGTGGGTAGTGACAACAGC
ACATGTAGGAAGGTACACCGCTGTGCCGGAGGCAGCGGTGTTTGTGCTCC
GGGTGAGGGGCGGGGCAGAGGGGAAGAAAGGGTTGGATGAGGAGGACTTG
GTTCACATCCAGCACAGGTGGGTACGGACCTTTTGAAAAGGGAGGGGAGA
GAGGGGGGGGCAGAAGCAGGGTGTAGGGTGAGACCAGCGAACATGGACAT
TCACGACTGCGTTATGAGGTTAGGGTGATAAGTCTTCAGGGGATGGAGAT
GGCAGGCCTTGTTGGCTTGCTCAATAAATGGCAGAGACCAGGGAGGCCCT
GCCTTGCCAACTCCTCACCTTACCCCCCCACCTCTGCCCTCTGGTGTGCG
CCCGACGTAGGGATACTAGCCTCTTCCTGTCGGTGTCTCCCACAGCCCCC
CAGGACACCCCCAGGCTGGGGCACGGGGGGGATGCCCTGGGGATGAATTC
ACATCACCCCCCTGGGGGGAGACTGGCACTGACTCTTGCCAAATGGCCAC
AGACAACAGAGGTGGGTGTGTAGGGGGGGAGGGAACAGGAAGAATGGTGC
GAGCATCATTCGAGGCAATGGGGCTATTAGGGTTACAGACTGGACAGGAG
AGAGTTGGTTGCCCCACAGAGAAGCGTGGCTCTGCTCTCACATTGAGGTG
CTGCTTCAGTTGAGGGGATGAGATTGATTCAAACAGTGGATCTTGCACCC
GTTTGCTCATCTTTTTTTTTGTCAAGAGTGCCTTGGAGCGTAAAGGGGGG
GTCATCAGGTTTCCAGCGCCGGACTTGGCTGCCATTGCTGTTCCCTCTGA
GCTCTTCCGTAGAACCATGTGCCATCCAGCCACAGGTGTTTTGTTGTATG
CCCCTGGGGTCATCCTTTTCTCCCTCACCTTTCCCCCATGCCACTGAGGA
GAGTTTGCCAAGGCCTGTGCATATGCAGAGAATTCTGACACATTGACACT
GTGGATCTGCTCCTTGGATGAGGAGGCACACTGGTCTTGAGTTGAAACCT
GCTGGTGTCAATCCCTCTGATGGGGAAGCAGGTGTCAAGGCAGGGGGTCG
GCGGCAGAGCACAAATAGCGTCAATAAAAGCCGTCTCCTCTTTTGCAAGC
ACTGACTTTCCGGGTAGAGATATTTATCAAATCGTTAACCTGACCTGGAA
CGGCCCAATTTTTGGTCAGACCTGATACGTCCGATATGACAAAATCATAA
GGTCATTTCGGGCCAGCCCTGGACACTTCCGGTCACTCCAGGTGAATTAA
AGGTGGTATTCAGCCTCCAGGAGTCAAACGCCCACTGTCCAGTGTCCCAA
TGTCCAGTATTTTATGTGCTTCTAAAGTAGGTTTCTAAATCATCTTCTCT
ACATTGTCTAGGAAGCAGCTTGTGTCCATTGCTTCCAAGTGATACAACCC
TGACGAAATTCGTACTGTTGACACTTAGGCACCTCGCAGTGCTCAGTCTG
TGTGTGTGTCTCTCTGAAACCCCTATGTAACCACATGGGAGGAATGGCCT
GTTGACCTCTCATGAACCATAGGGGGCGTATCAGTCTGACCACAAACGGA
TCCAACACAACCTGAAACAACCTGACTTAGACCGTGTGACCTGACCAAAC
ACGCGCTTGAACAGTGTCTGTAAACCCCCTACTAATGTGTATTTTGATAC
ACTTTTCCACCCATCCTTCCGCAAACCTTCAGCTGCCTACCTACCCCATG
CATGCCTTCCCTTGCTGCTGCTCTTCCCCCCCTGTGGTGACCTCGTCTGC
TGGCTTGAAATTGTTGGCATGCCCCCACCAACCCTCCTCCATTATTTCGG
GGGGGGCTGGACCAAATTCTGCACATAACTCTTTATTTTTGGTGGTGGGT
AGTATTGGCGGCTAAAGCGAGCGCAAAGCAGTGAGCTTAAGGCCACACGC
CACATCCTCACTGCATTGACTCAGCTGGTGGTAAGTGCCGTTGGTTTAGT
TGTTCACCTGCCCTCTCAGGGGGGTCGGAGGATGACATGGGGAATATGGG
CCCAAGGTTCGAGTGCTTGTCCGTGACGAAAATGGGCTGGGGCAGCCTTG
CATGCATACACACCTGGTGGATTTTTTTTCATGGCCTTTAACTGTGGGGC
AAGGGTCTTGGTTGATTCCCACTAAGGGGAGGAGCCCCCCGCACACACAC
ACACACACACACACACATGGATGAACACGCCCCTGACCTCTCATCCCCAT
CAACATTTAGTCCATCGCTTGTTGCTTTCGCAGGTGACGCTGGATACCCT
ACTTGAGGAGGTAACCATACAACCTGACGCTCCTCCCCAGTTTGCGTCCC
GACCTGTCCATACCATGCAAGCGGCAATGATGCTGCCCCTGCCCCCGGCC
ACAGCCGCCACTACAGCCTCTCCCATGATGCCTCTGTCGGTCCCCAGGCC
CCCTGGACCCCCTGCCACAGAGCCATCTCCAGCCGTGGACCCGCCCCAGG
TTGAGGAGCCAGGCCTTTCCCCGCCCATGCCAAAGGGGACACGCCCGCCG
CCACCGAAGCGGGTGCCACCCCTGGCTCCAGGGCAGCAGCAGCACCACCG
ACCCCTGGCCACTGGGCGGCAGCACCTCATCGCCCGCGTATCGGAGAACT
CGCTGTTCCAGGCCACACTGGCAGTGTCTCACTTCCAGATAACCCTCGGT
CAGGGGGCAGACTGGTGGCAGGAGGACGTGGAGAGCGGCTACAAGGAGGG
CAGCTACGGGCCGGGGGCTGGGGGGGGTCGAAGGGTGAGGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9565:1984..4775-

>mRNA_D-mesarthrocarpus_Contig9565.1.2 ID=mRNA_D-mesarthrocarpus_Contig9565.1.2|Name=mRNA_D-mesarthrocarpus_Contig9565.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=903bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9565:1984..4775- (Discosporangium mesarthrocarpum MT17_79)
GAGCCACTCATCGACCCAGATTTTGGGTCAGGGTGGGTAGTGACAACAGC
ACATGTAGGAAGGTACACCGCTGTGCCGGAGGCAGCGGTGTTTGTGCTCC
GGGTGAGGGGCGGGGCAGAGGGGAAGAAAGGGTTGGATGAGGAGGACTTG
GTTCACATCCAGCACAGGGATACTAGCCTCTTCCTGTCGGTGTCTCCCAC
AGCCCCCCAGGACACCCCCAGGCTGGGGCACGGGGGGGATGCCCTGGGGA
TGAATTCACATCACCCCCCTGGGGGGAGACTGGCACTGACTCTTGCCAAA
TGGCCACAGACAACAGAGTATTGGCGGCTAAAGCGAGCGCAAAGCAGTGA
GCTTAAGGCCACACGCCACATCCTCACTGCATTGACTCAGCTGGTGGTGA
CGCTGGATACCCTACTTGAGGAGGTAACCATACAACCTGACGCTCCTCCC
CAGTTTGCGTCCCGACCTGTCCATACCATGCAAGCGGCAATGATGCTGCC
CCTGCCCCCGGCCACAGCCGCCACTACAGCCTCTCCCATGATGCCTCTGT
CGGTCCCCAGGCCCCCTGGACCCCCTGCCACAGAGCCATCTCCAGCCGTG
GACCCGCCCCAGGTTGAGGAGCCAGGCCTTTCCCCGCCCATGCCAAAGGG
GACACGCCCGCCGCCACCGAAGCGGGTGCCACCCCTGGCTCCAGGGCAGC
AGCAGCACCACCGACCCCTGGCCACTGGGCGGCAGCACCTCATCGCCCGC
GTATCGGAGAACTCGCTGTTCCAGGCCACACTGGCAGTGTCTCACTTCCA
GATAACCCTCGGTCAGGGGGCAGACTGGTGGCAGGAGGACGTGGAGAGCG
GCTACAAGGAGGGCAGCTACGGGCCGGGGGCTGGGGGGGGTCGAAGGGTG
AGG
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