mRNA_D-mesarthrocarpus_Contig9549.3.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9549.3.2
Unique NamemRNA_D-mesarthrocarpus_Contig9549.3.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9549.3.2 vs. uniprot
Match: A0A6H5K431_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K431_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.110e-48
Identity = 117/289 (40.48%), Postives = 149/289 (51.56%), Query Frame = 1 
Query:   91 LRLIALALASPRRIPGVVEATWSLPC---RWHSSNPGLRGGPVE---ATRCCRLVLGCRGGAEGDELTSLLQKGWQKLESGDHDGAVSSYDLAAGLDPSSAAARCGLGRALIRKGRLEEGFESLLIAFGQDSLCPGVKDGFREYYRKEIEINPSNIDAYEGLAALCVDSGQPQEAAECYRSCLDLTSPTPPDGTDTDIAPPPPASEVGQGTDKGPRSSILRDDTRAGFSAAAAAAVAEEVDGSLGPTLRRDRWSVALFKCRAALCDWTDWEASSNDLRAAVCRAGWDTR 939
            +RL  L L  P   P      W  PC     H+  P +RG  +     T          G   G     LL  G Q+ ++GD + AV  ++ AA   P SA  +  LGRAL+R GR +EGF  L+ AFG DSLCPGVKDGFREYYR EIE +P+N+D +EGLAALCVDSG P+EAA  YR  L L                  A+   +G+ +      +R  + +  SAA   +  E  + +     R+DRWSVALFKC A+LC W DW   +  LR AV R GW  R
Sbjct:    1 MRLAPLCLVPPSLTP-TAAVVW--PCVNNHRHACAPTVRGTTIAHRLRTTYAAAAAAQDGPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNVDLHEGLAALCVDSGNPEEAAALYRRLLGLH-----------------ATATAEGSGR------IRSFSSSNPSAAGDLSSKETTEAAAAA--RKDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGWRRR 261
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BLAST of mRNA_D-mesarthrocarpus_Contig9549.3.2 vs. uniprot
Match: D7FH04_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH04_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.580e-46
Identity = 118/283 (41.70%), Postives = 142/283 (50.18%), Query Frame = 1 
Query:   91 LRLIALALASPRRIPGVVEATWSLPC---RWHSSNPGLRGGPVE---ATRCCRLVLGCRGGAEGDELTSLLQKGWQKLESGDHDGAVSSYDLAAGLDPSSAAARCGLGRALIRKGRLEEGFESLLIAFGQDSLCPGVKDGFREYYRKEIEINPSNIDAYEGLAALCVDSGQPQEAAECYRSCLDLTSPTPPDGTDTDIAPPPPASEVGQGTDKGPRSSILRDDTRAGFSAAAAAAVAEEVDGSLGPTLRRDRWSVALFKCRAALCDWTDWEASSNDLRAAVCR 921
            +RL  L L  P   P      W  PC     H+  P  R         T C        G   G     LL  G Q  ++GD + AV  ++ AA   P SA  +  LGRAL+R GR +EGF  L+ AFG DSLCPGVKDGFREYYR EIE +P+NID +EGLAALCVDSG P+EAA  YR CL L                  A+   +G  + P  S   D + AG  ++  A  A           R+DRWSVALFKC A+LC W DW   +  LR AV R
Sbjct:    1 MRLAPLYLVPPSVAP-TAAVVW--PCANNHRHAYAPTARATTTAHRLRTTCAAAAAAQDGPDNGANTERLLALGRQHTQAGDLESAVYQFEQAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLGLH-----------------AAASAEGGGRTPSFSSS-DPSAAGHLSSKEATEA-------AAAARKDRWSVALFKCNASLCQWDDWNGEALTLRTAVRR 255
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9549.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K431_9PHAE1.110e-4840.48GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FH04_ECTSI1.580e-4641.70UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9549contigD-mesarthrocarpus_Contig9549:3259..4721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FH04
PFAMsGlyco_transf_41,TPR_10,TPR_16,TPR_8
Model size958
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.8e-47
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota
EC2.4.1.255
Descriptionprotein N-acetylglucosaminyltransferase activity
Cds size873
COG categoryO
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791109.0480685-UTR-D-mesarthrocarpus_Contig9549:3258..33421680791109.0480685-UTR-D-mesarthrocarpus_Contig9549:3258..3342Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9549 3259..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791109.0613816-CDS-D-mesarthrocarpus_Contig9549:3342..37801680791109.0613816-CDS-D-mesarthrocarpus_Contig9549:3342..3780Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9549 3343..3780 +
1680791109.0754611-CDS-D-mesarthrocarpus_Contig9549:4286..47211680791109.0754611-CDS-D-mesarthrocarpus_Contig9549:4286..4721Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9549 4287..4721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9549.3.2prot_D-mesarthrocarpus_Contig9549.3.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9549 3343..4721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9549.3.2

>prot_D-mesarthrocarpus_Contig9549.3.2 ID=prot_D-mesarthrocarpus_Contig9549.3.2|Name=mRNA_D-mesarthrocarpus_Contig9549.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=291bp
MLLRLIALALASPRRIPGVVEATWSLPCRWHSSNPGLRGGPVEATRCCRL
VLGCRGGAEGDELTSLLQKGWQKLESGDHDGAVSSYDLAAGLDPSSAAAR
CGLGRALIRKGRLEEGFESLLIAFGQDSLCPGVKDGFREYYRKEIEINPS
NIDAYEGLAALCVDSGQPQEAAECYRSCLDLTSPTPPDGTDTDIAPPPPA
SEVGQGTDKGPRSSILRDDTRAGFSAAAAAAVAEEVDGSLGPTLRRDRWS
VALFKCRAALCDWTDWEASSNDLRAAVCRAGWDTREPSITG
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mRNA from alignment at D-mesarthrocarpus_Contig9549:3259..4721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9549.3.2 ID=mRNA_D-mesarthrocarpus_Contig9549.3.2|Name=mRNA_D-mesarthrocarpus_Contig9549.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1463bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9549:3259..4721+ (Discosporangium mesarthrocarpum MT17_79)
GTTTGTGAATAGCCTGTAAATTCAATGCGACTCAGAGGTCGCTCATAAAT
ACGCCGCGGTTTTGAGTCCGTGGTACAGGTTGTGATGTTGCTGAGGCTGA
TTGCGCTGGCCCTGGCCTCACCCAGACGAATCCCTGGCGTGGTCGAAGCC
ACTTGGTCTTTGCCGTGTCGGTGGCACAGCTCCAACCCAGGACTCCGCGG
CGGACCTGTTGAAGCAACGCGTTGTTGTCGCCTGGTCCTTGGGTGCCGTG
GGGGTGCTGAAGGGGATGAGCTGACTTCTCTTCTCCAGAAGGGTTGGCAA
AAGCTTGAATCCGGAGACCACGACGGTGCCGTGTCTTCGTACGATCTTGC
GGCGGGACTCGACCCTAGTTCGGCCGCTGCAAGGTGTGGACTGGGCAGGG
CATTGATACGAAAGGGGAGGCTCGAGGAAGGATTCGAGAGTCTTTTGATA
GCTTTTGGGCAAGACTCCCTTTGCCCCGGCGTAAAGGATGGGTTCCGGGA
ATACTACAGGAAAGAAATTGAGGTGCGGATTGCACAGAGAGACAAAGAAA
AAAGCGGAGAACCCTGAGGACCAAGGTCACTCTCGTTTCTCACACCTCCC
AGTGGTGCTGAGTTGGATGCAGTCGATCCAACCAAGGCTGGATGTCTGTT
CCGACGATCTCTGAAATGGGCGGGTTTGTTTGTTGGCCCAAGTTCCTTAG
ATGAATGTGGCATGTTCTGTGCCTTTGATTACTCGTACATAAGTGCTCTT
CCCTTTCAGAGTCGTTGGGAGAAGGAAGGTTGGACGGGGTGGACTTCAAT
ACTCGTGTTGACTTGGGGTCAGTTACATGGAGAGTGTCTGAAATTACGCT
TGCTGACTTCCCTGTGACACCCTGCCTCAAGCCCTTCTACATACCACCCG
AAAAAACATCCCAGGTCACAAGTCCCACCATTGCTCTAGGCAAGTGTTCA
CTGATATCAGAGCCACCGTGATGATCGTGATTCCCTTCACCACAACGCTT
CCCACCTCCCCACCCCGTGTGCATACAGATCAATCCCTCGAACATCGATG
CCTATGAAGGCCTCGCAGCCCTCTGTGTGGACTCTGGCCAGCCCCAGGAG
GCCGCGGAATGCTACCGAAGCTGTCTAGACCTCACTTCCCCCACCCCCCC
TGACGGAACTGATACCGACATAGCCCCCCCTCCACCAGCATCAGAGGTGG
GACAAGGCACAGATAAGGGTCCCAGGAGCAGTATATTGCGGGATGACACC
AGGGCAGGATTCTCTGCAGCAGCAGCAGCAGCGGTGGCAGAGGAGGTAGA
TGGCAGCCTGGGCCCCACACTTCGGCGTGACCGCTGGTCCGTGGCACTCT
TCAAGTGCCGGGCTGCCCTCTGTGATTGGACAGATTGGGAGGCCTCTTCC
AATGATCTGCGGGCAGCGGTCTGCAGGGCGGGGTGGGACACGAGGGAGCC
CAGCATAACTGGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9549:3259..4721+

>mRNA_D-mesarthrocarpus_Contig9549.3.2 ID=mRNA_D-mesarthrocarpus_Contig9549.3.2|Name=mRNA_D-mesarthrocarpus_Contig9549.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=873bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9549:3259..4721+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTGCTGAGGCTGATTGCGCTGGCCCTGGCCTCACCCAGACGAATCCC
TGGCGTGGTCGAAGCCACTTGGTCTTTGCCGTGTCGGTGGCACAGCTCCA
ACCCAGGACTCCGCGGCGGACCTGTTGAAGCAACGCGTTGTTGTCGCCTG
GTCCTTGGGTGCCGTGGGGGTGCTGAAGGGGATGAGCTGACTTCTCTTCT
CCAGAAGGGTTGGCAAAAGCTTGAATCCGGAGACCACGACGGTGCCGTGT
CTTCGTACGATCTTGCGGCGGGACTCGACCCTAGTTCGGCCGCTGCAAGG
TGTGGACTGGGCAGGGCATTGATACGAAAGGGGAGGCTCGAGGAAGGATT
CGAGAGTCTTTTGATAGCTTTTGGGCAAGACTCCCTTTGCCCCGGCGTAA
AGGATGGGTTCCGGGAATACTACAGGAAAGAAATTGAGATCAATCCCTCG
AACATCGATGCCTATGAAGGCCTCGCAGCCCTCTGTGTGGACTCTGGCCA
GCCCCAGGAGGCCGCGGAATGCTACCGAAGCTGTCTAGACCTCACTTCCC
CCACCCCCCCTGACGGAACTGATACCGACATAGCCCCCCCTCCACCAGCA
TCAGAGGTGGGACAAGGCACAGATAAGGGTCCCAGGAGCAGTATATTGCG
GGATGACACCAGGGCAGGATTCTCTGCAGCAGCAGCAGCAGCGGTGGCAG
AGGAGGTAGATGGCAGCCTGGGCCCCACACTTCGGCGTGACCGCTGGTCC
GTGGCACTCTTCAAGTGCCGGGCTGCCCTCTGTGATTGGACAGATTGGGA
GGCCTCTTCCAATGATCTGCGGGCAGCGGTCTGCAGGGCGGGGTGGGACA
CGAGGGAGCCCAGCATAACTGGA
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