mRNA_D-mesarthrocarpus_Contig944.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig944.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig944.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5KN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN04_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.790e-6
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPF L  D S DG    LGQE  DG +RP+ F+SRAT+
Sbjct:  204 GSRPFHLYCDASRDGFGGTLGQEQPDGFIRPIVFISRATL 243
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPFRL  D S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  568 GSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATL 607
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5KIF5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPFRL  D S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  740 GSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATL 779
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5KAD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD8_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPFRL  D S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  103 GSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATL 142
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5K248_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K248_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPFRL  D S DG    L QE  DG VRP+ F+SRAT+
Sbjct:  483 GSRPFRLYYDASKDGFGGTLEQEQPDGSVRPIVFVSRATL 522
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5JUD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD0_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.770e-5
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPF L ID S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  248 GSRPFHLHIDASHDGFGGTLEQEQPDGSIRPIVFISRATL 287
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: W6NGW3_HAECO (Integrase domain containing protein n=2 Tax=Haemonchus contortus TaxID=6289 RepID=W6NGW3_HAECO)

HSP 1 Score: 48.1 bits (113), Expect = 3.430e-5
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSR 111
            G +PF++ +D +T+GL AVL QEG DG + P+YF S+
Sbjct:   63 GRKPFKIHLDANTEGLGAVLSQEGDDGFLHPIYFASK 99
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPF L  D S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  463 GSRPFHLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATL 502
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BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5J9N0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N0_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPF L  D S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  636 GSRPFHLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATL 675
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Match: A0A6H5JSG5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG5_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 1 
Query:    1 GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATI 120
            G RPF L  D S DG    L QE  DG +RP+ F+SRAT+
Sbjct:  279 GSRPFHLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATL 318
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KN04_9PHAE3.790e-655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ4_9PHAE1.330e-555.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIF5_9PHAE1.330e-555.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KAD8_9PHAE1.340e-555.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K248_9PHAE1.340e-557.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUD0_9PHAE1.770e-555.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W6NGW3_HAECO3.430e-551.35Integrase domain containing protein n=2 Tax=Haemon... [more]
A0A6H5JFL9_9PHAE6.410e-552.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J9N0_9PHAE6.410e-552.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JSG5_9PHAE6.410e-552.50Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig944contigD-mesarthrocarpus_Contig944:2075..2200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog31234.CRE11390
PFAMsRVT_1,rve
Model size126
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.91e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3C6C0@33208|Metazoa,3DJ3A@33213|Bilateria,40KA4@6231|Nematoda,1M3P9@119089|Chromadorea,410XN@6236|Rhabditida
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size126
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791098.1395946-CDS-D-mesarthrocarpus_Contig944:2074..22001680791098.1395946-CDS-D-mesarthrocarpus_Contig944:2074..2200Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig944 2075..2200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig944.1.1prot_D-mesarthrocarpus_Contig944.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig944 2075..2200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig944.1.1

>prot_D-mesarthrocarpus_Contig944.1.1 ID=prot_D-mesarthrocarpus_Contig944.1.1|Name=mRNA_D-mesarthrocarpus_Contig944.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=42bp
GGRPFRLTIDESTDGLEAVLGQEGKDGVVRPLYFLSRATIG*
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mRNA from alignment at D-mesarthrocarpus_Contig944:2075..2200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig944.1.1 ID=mRNA_D-mesarthrocarpus_Contig944.1.1|Name=mRNA_D-mesarthrocarpus_Contig944.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=126bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig944:2075..2200- (Discosporangium mesarthrocarpum MT17_79)
GGTGGTCGCCCTTTTCGTCTAACTATAGATGAGAGCACGGATGGATTAGA
GGCAGTCTTAGGGCAGGAGGGAAAAGATGGAGTGGTGCGCCCTCTGTATT
TTTTGAGTCGTGCCACCATCGGGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig944:2075..2200-

>mRNA_D-mesarthrocarpus_Contig944.1.1 ID=mRNA_D-mesarthrocarpus_Contig944.1.1|Name=mRNA_D-mesarthrocarpus_Contig944.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=126bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig944:2075..2200- (Discosporangium mesarthrocarpum MT17_79)
GGTGGTCGCCCTTTTCGTCTAACTATAGATGAGAGCACGGATGGATTAGA
GGCAGTCTTAGGGCAGGAGGGAAAAGATGGAGTGGTGCGCCCTCTGTATT
TTTTGAGTCGTGCCACCATCGGGTAG
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