mRNA_D-mesarthrocarpus_Contig9355.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9355.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9355.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: W7TR87_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR87_9STRA)

HSP 1 Score: 168 bits (425), Expect = 7.870e-51
Identity = 79/126 (62.70%), Postives = 105/126 (83.33%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEAT-GSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G G QTRSFQYV DLV GL+ LMN  Y+ PVN+GNP+EY+VK+FA++V+E    + SQ+VHL ATKDDP KR+PDI++AK++LGWEP V+VR+G+  TI+YFR+ELE TGEITPTGP+A++P
Sbjct:   37 ITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARP 162          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: W7TNW1_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNW1_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.100e-50
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKE-ATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G+G QTRSFQYV DLV GL  LMN  Y  PVN+GNPEEYTVK+FA++VKE   GSPS +VH+ ATKDDP KR+PDI +A + LGW+PRV VREG+  T+ YFR ELE TGEI PTGP A++P
Sbjct:   47 ITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRP 172          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A6H5KWP6_9PHAE (UDP-glucuronate decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWP6_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.330e-50
Identity = 82/125 (65.60%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + GDG QTRSFQYV DLVRGL+ALMN  Y  PVNIGNP+EYTVK+FA ++K +T S S+++ ++ TKDDPNKR+PDI+LAK++L WEP VAV++G+  TIKYFR EL++TGEI PTGP ASKP
Sbjct:  348 ITIYGDGSQTRSFQYVDDLVRGLIALMNSNYSGPVNIGNPDEYTVKDFAELIKSSTESTSKIIFMDGTKDDPNKRKPDITLAKKELRWEPTVAVKDGLVETIKYFRGELKKTGEIIPTGPDASKP 472          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A1E7EJ50_9STRA (UDP-glucuronate decarboxylase n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJ50_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.100e-49
Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 1
Query:   16 GDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            G+G QTRSFQYV+DLV GL ALMN  YD PVN+GNP+E+T+KEFA  VK+ T S S ++ LE T+DDPNKR+PDISLAKEKLGWEPRV V+EG+  TI YF+Q L+  GEI PTGP ASKP
Sbjct:  203 GEGDQTRSFQYVSDLVDGLHALMNGDYDGPVNLGNPDEFTMKEFAQYVKKLTKSESDIIFLEKTQDDPNKRKPDISLAKEKLGWEPRVTVKEGLSKTITYFQQVLDEAGEIIPTGPGASKP 323          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A7S2HWZ1_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HWZ1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.240e-48
Identity = 77/125 (61.60%), Postives = 98/125 (78.40%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G GLQTRSFQYV DLV GL ALMN  YD PVN+GNP+EYTVK+FA  +KE T S S++  L  T+DDPN+R+PDI++AK+ LGWEP+V VR+G+E TI YFR+ L+  GEI PTGP+ +KP
Sbjct:  104 ITIYGPGLQTRSFQYVDDLVEGLHALMNSDYDLPVNLGNPDEYTVKDFAEYIKEMTESKSEIKFLPKTEDDPNQRKPDITVAKKNLGWEPKVEVRDGLERTISYFRRVLDDAGEIIPTGPEGAKP 228          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A4D9D2V9_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2V9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 6.870e-48
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKE-ATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G+G QTRSFQYV DLV GL  LMN  Y  PVN+GNPEEYTVKEFA++VKE   GSPS +VH+ ATKDDP KR+PDI +A + LGW+PRV VREG+  T+ YFR ELE TGEI PTGP A++P
Sbjct:  344 ITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKEFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIQVATDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRP 469          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: K8YTX9_NANGC (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTX9_NANGC)

HSP 1 Score: 168 bits (425), Expect = 3.880e-47
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKE-ATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G+G QTRSFQYV DLV GL  LMN  Y  PVN+GNPEEYTVK+FA++VKE   GSPS +VH+ ATKDDP KR+PDI +A + LGW+PRV VREG+  T+ YFR ELE TGEI PTGP A++P
Sbjct:  361 ITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRP 486          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A812Q9G5_SYMMI (UDP-glucuronate decarboxylase (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Q9G5_SYMMI)

HSP 1 Score: 157 bits (397), Expect = 4.470e-47
Identity = 74/125 (59.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G G QTRSFQ+V DLV GL+ALMN  Y QPVN+GNP+EY+VK+FA  +KE T S S +  L AT+DDP +R+PDI+ AKE++GW P+V VR G+   I+YFR+ELE +GEI PTGP AS+P
Sbjct:    7 ITIYGTGSQTRSFQFVDDLVNGLMALMNGNYSQPVNLGNPDEYSVKDFAAFIKELTKSNSTIKFLPATQDDPRQRKPDITTAKERIGWSPQVPVRVGLAKAIEYFRKELENSGEIIPTGPDASRP 131          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A4D9CY17_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY17_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.200e-46
Identity = 79/126 (62.70%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    4 VRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEATGS-PSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            + + G G QTRSFQYV DLV GL+ LMN  Y+ PVN+GNP+EY+VK+FA++V+E   +  SQ+VHL ATKDDP KR+PDI+ AK++LGWEP V+VR+G+  TI+YFR+ELE TGEITPTGP+A++P
Sbjct:  356 ITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNMDSQIVHLPATKDDPAKRKPDITTAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARP 481          
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Match: A0A7S2FJ01_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJ01_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.270e-46
Identity = 74/121 (61.16%), Postives = 97/121 (80.17%), Query Frame = 1
Query:   16 GDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFAVMVKEATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIEMTIKYFRQELERTGEITPTGPKASKP 378
            G+G QTRSFQYV DLV GL+ LMN  YD PVN+GNP+EYT+K+FA ++ + T + S ++H+ AT+DDP +R+PDI++AK K+GW+P+VAV EGI  TI YFR+EL  TGEI PTGP AS+P
Sbjct:  219 GEGAQTRSFQYVDDLVNGLMKLMNGDYDMPVNLGNPDEYTIKDFATVIHKFTDTNSTIIHMPATEDDPRQRKPDITIAKSKIGWQPQVAVDEGIRKTIDYFRKELMDTGEIIPTGPDASRP 339          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9355.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TR87_9STRA7.870e-5162.70UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
W7TNW1_9STRA2.100e-5064.29UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
A0A6H5KWP6_9PHAE3.330e-5065.60UDP-glucuronate decarboxylase n=2 Tax=Ectocarpus T... [more]
A0A1E7EJ50_9STRA1.100e-4968.60UDP-glucuronate decarboxylase n=2 Tax=Fragilariops... [more]
A0A7S2HWZ1_9STRA4.240e-4861.60UDP-glucuronate decarboxylase n=1 Tax=Helicotheca ... [more]
A0A4D9D2V9_9STRA6.870e-4865.08UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
K8YTX9_NANGC3.880e-4764.29UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
A0A812Q9G5_SYMMI4.470e-4759.20UDP-glucuronate decarboxylase (Fragment) n=1 Tax=S... [more]
A0A4D9CY17_9STRA1.200e-4662.70UDP-glucuronate decarboxylase n=1 Tax=Nannochlorop... [more]
A0A7S2FJ01_9STRA1.270e-4661.16UDP-glucuronate decarboxylase n=1 Tax=Florenciella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9355contigD-mesarthrocarpus_Contig9355:282..1500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQ60
PFAMsGDP_Man_Dehyd
Model size399
Max annot lvl2759|Eukaryota
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.62e-52
EggNOG OGsCOG0451@1|root,KOG1429@2759|Eukaryota
EC4.1.1.35
DescriptionUDP-glucuronate decarboxylase activity
Cds size399
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791089.4400284-CDS-D-mesarthrocarpus_Contig9355:281..4341680791089.4400284-CDS-D-mesarthrocarpus_Contig9355:281..434Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9355 282..434 +
1680791089.4545612-CDS-D-mesarthrocarpus_Contig9355:880..10181680791089.4545612-CDS-D-mesarthrocarpus_Contig9355:880..1018Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9355 881..1018 +
1680791089.478305-CDS-D-mesarthrocarpus_Contig9355:1392..15001680791089.478305-CDS-D-mesarthrocarpus_Contig9355:1392..1500Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9355 1393..1500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9355.1.1prot_D-mesarthrocarpus_Contig9355.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9355 282..1500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9355.1.1

>prot_D-mesarthrocarpus_Contig9355.1.1 ID=prot_D-mesarthrocarpus_Contig9355.1.1|Name=mRNA_D-mesarthrocarpus_Contig9355.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=133bp
TVRLPGDGLQTRSFQYVADLVRGLVALMNEGYDQPVNIGNPEEYTVKEFA
VMVKEATGSPSQVVHLEATKDDPNKRRPDISLAKEKLGWEPRVAVREGIE
MTIKYFRQELERTGEITPTGPKASKPGTGKSA*
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mRNA from alignment at D-mesarthrocarpus_Contig9355:282..1500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9355.1.1 ID=mRNA_D-mesarthrocarpus_Contig9355.1.1|Name=mRNA_D-mesarthrocarpus_Contig9355.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9355:282..1500+ (Discosporangium mesarthrocarpum MT17_79)
ACTGTGCGTTTGCCAGGTGATGGTCTGCAGACCAGGTCCTTCCAGTACGT GGCCGACCTGGTGCGGGGGCTGGTGGCCCTCATGAATGAGGGGTATGACC AGCCGGTCAACATAGGGAACCCTGAGGAGTACACTGTCAAGGAGTTCGCC GTGGTGAGCGTCGTAAGGCTTAGGGCTAGGCTTAGGGCTAGGCTTAGGGC TAGGCTTAGGGTTGTGGAGCCAAGGCTATGGGTACAATGGAATTTTTTGT TTGGGGTACAGTTCATGAGCGGATTTTATAACTCTGGTGATAAAACTCTG ATGGTGTTGATTCCCTGTTTTCATTCTATGTGGCCCCCTCATGAACATGC TTTTTGTGTCTCATACTACCACTTCCTTTTTCTTTTCTTTTCTTTCTTCT TTTTCTCTTTGCACCGGCTCTCTTGAACGAAGGGATGTACGAACTTCAAG TGCGTCCGTTGATGGCGTTCCTGCACCTGCTCCCCTGCTTGATCGCTCTT TTTTCATATGGCTCAAGAAAGGTCGTTGTTTCAATCTGCTTTGCATGTTT TGTTTTGTTTTGTTTCCTTTTTGTGTTTGCACCTCATGCACGAAAGCAGA TGGTGAAAGAGGCCACTGGCAGCCCTAGTCAGGTGGTTCACCTGGAGGCG ACCAAGGACGATCCCAACAAGAGGAGGCCAGACATATCCCTGGCCAAGGA GAAGCTTGGCTGGGAGCCAAGGGTGGCTGTCAGGGAGGTAAGCCATGCCG AGGTGGAGCTCAAGCTGTAGAATTAGGGTTAGGGCTGAGGCTGGGGCTGG GGCTGGGACTGGGGCTGGGATGACCTCCTCTCTTTGCTCGAGCAATCAGC TAGGGTTTAGGTTTAGGGTCTAGGGTTTAGGGTTGGGGTCAGGGTTATGG TCAGGTTTAGGGTCAGGTTTAGGGTTAGGGTCAGGGTTAGGGTTAGGGTA GTGCAAAGCCAGGGGGTTGTAGAGTTGTGCAGCTCTTTGGGGTACGGCAG TTAAGGCCAGGGTCAGGGCCAGTTGGCTCTTTTTTGCCCTGCACCACATT TATCCCTGACCCGAGCCCTAACCCCGTAACCCCTAACCCTGGCGTGATGG CAAAACGGCAGGGCATCGAAATGACGATCAAATATTTCCGACAAGAGCTG GAGCGGACAGGGGAAATCACCCCAACAGGGCCGAAAGCCTCCAAGCCAGG GACAGGGAAGTCTGCATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9355:282..1500+

>mRNA_D-mesarthrocarpus_Contig9355.1.1 ID=mRNA_D-mesarthrocarpus_Contig9355.1.1|Name=mRNA_D-mesarthrocarpus_Contig9355.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=399bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9355:282..1500+ (Discosporangium mesarthrocarpum MT17_79)
ACTGTGCGTTTGCCAGGTGATGGTCTGCAGACCAGGTCCTTCCAGTACGT
GGCCGACCTGGTGCGGGGGCTGGTGGCCCTCATGAATGAGGGGTATGACC
AGCCGGTCAACATAGGGAACCCTGAGGAGTACACTGTCAAGGAGTTCGCC
GTGATGGTGAAAGAGGCCACTGGCAGCCCTAGTCAGGTGGTTCACCTGGA
GGCGACCAAGGACGATCCCAACAAGAGGAGGCCAGACATATCCCTGGCCA
AGGAGAAGCTTGGCTGGGAGCCAAGGGTGGCTGTCAGGGAGGGCATCGAA
ATGACGATCAAATATTTCCGACAAGAGCTGGAGCGGACAGGGGAAATCAC
CCCAACAGGGCCGAAAGCCTCCAAGCCAGGGACAGGGAAGTCTGCATGA
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